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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR040847
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 7 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.748s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi3g1v0108600.1
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381294 13406224 +
2 domain predictions
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LotjaGi3g1v0108600.3
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381809 13405194 +
2 domain predictions
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LotjaGi3g1v0108600.4
n.a. Protein kinase, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13381809 13405194 +
2 domain predictions
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LotjaGi3g1v0108600.6
n.a. Ankyrin repeat domain protein, putative; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|I1LLG6|I1LLG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13397147 13399823 +
2 domain predictions
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LotjaGi3g1v0108600.7
n.a. E3 ubiquitin-protein ligase KEG; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|A0A0B2QMC9|A0A0B2QMC9_GLYSO E3 ubiquitin-protein ligase KEG; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13397147 13405194 +
2 domain predictions
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LotjaGi3g1v0108600.8
n.a. E3 ubiquitin-protein ligase KEG; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|A0A0B2QMC9|A0A0B2QMC9_GLYSO E3 ubiquitin-protein ligase KEG; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13401963 13405194 +
2 domain predictions
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LotjaGi3g1v0108600.9
n.a. E3 ubiquitin-protein ligase KEG; TAIR: AT5G13530.1 protein kinases;ubiquitin-protein ligase; Swiss-Prot: sp|Q9FY48|KEG_ARATH E3 ubiquitin-protein ligase KEG; TrEMBL-Plants: tr|A0A0B2QMC9|A0A0B2QMC9_GLYSO E3 ubiquitin-protein ligase KEG; Found in the gene: LotjaGi3g1v0108600 LjG1.1_chr3 13402970 13405194 +
2 domain predictions
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