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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0109000 |
| Transcript ID | LotjaGi3g1v0109000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein, putative; TAIR: AT1G72050.2 transcription factor IIIA; Swiss-Prot: sp|Q84MZ4|TF3A_ARATH Transcription factor IIIA; TrEMBL-Plants: tr|A0A0B2RV66|A0A0B2RV66_GLYSO Transcription factor IIIA; Found in the gene: LotjaGi3g1v0109000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13436295..13439231) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAACAAAGTGAAAATTATACGCAGTCTCAAAACGACATCGTATATAAATCTATATGTTTCACAGTTGCCGCTAACCC TAGTCTCACTCTCGCATCCTCAGCTTCCCCAAGCTGCGCATTCTCTCGCCCCAGAAATCTCAATCTTCACATCAATTCCC AGAATCGTTGCAATCTCCACCAGTTTCCCTTATCCTTCCATCACCAAAGATGGTTGAATCTATGGAATCTGAAGAAATCC CCAAATTCCATGATATTAGACGCTATTTCTGTGAATACTGCGGTATCTGCAGATCCAAAAAAACCCTCATCACAGCTCAC ATCAATTCACACCACAAGGTACAATTTGATTTTAAGCAAGTTTATCTAGTTCAATTAGAAATCGTTTTTCTTCACTTTTT TGTTGAAATTGAATTTACGTGCGTTGTTTTTTAAAAATAGTTTTTTTTATTGGATAAATTTATAGATTGATTTAAATTCT AAATGGGTATGCTTTTCCTGGTTAAATTTTTGTTTTTTATTGCATACCATTATATGGGCAAGTTTGTTAGGTGTGTAACT ATATGTGGATTTGTTGTTTACTTTTGATGTATTTTAGGAGGAGGTGGAAAAAAGAGTTGAAGGAGAATCTGAAACAGAGG CTTCAAAGCCTAAAACTTGTGAGCAATGTGGTGCTAGTTTCAAAAAACATGCCTACTTGTTGCAGCACATGCGAAGTCAT TCGGCTGAGGTAATTGCTTAATGATAGATATGAAGTTGTTATATTTGGAATATGGAGTGTGTGGAGCTAAATATTTGGAA ATCGTAAAATGTTAGTTTGCTGAAAGAAATAGCTATTTGTTGGTACTTGAGATCCTATTACTGGTTGCATGAACTGAAGA GACATATTTTTGCAGGAAAGTAATTAGTAAGACACTAAATCATCTGAAAATTTTGGATGTTATAGTGTGAAGCATTGGAT CCCAGACAAAAGGAACTCCAAAATGCGCGAGGCAGCATATTTTCACTTTGATGGAATAGTAACAGGTAGGGAGACCTCCT GTGAAGCTCCATCAAGGATGCCTCGGTCACGCTCTGGTCAAGGTTGGCAGTTTGTTCGGCTGTATAATTGTTCTTACCAA AGCTTGATAGCACTTGTCAGTTATTTTTCTTCCTGTTTCTAGGTTTAACACTTGTTGTGATGTTTCCAGAGGCCATATGT GTGTACTGTTGATGATTGTAAGGCAAGTTACAGAAGAAAGGACCACTTGACTCGCCACCTTTTACAGCACCAGGGGAAAA CTTTCAAGTGTCCTATTGAGAATTGCAACAGTAGCTTCTCTATACAAAGCAATTTGAAAAGACATGTCGATGAGCTTCAC GATGGCAAGTCTACCTCTACTTGTGTTGAAAGTCAGAAGCAGTATGTGTGTCCAGAAGTTGGCTGTGGAAAGGTTTTCAG ATATGCATCAAAGCTACGGAAGCATGAAGATTCTCATGGCAAGTTACTTTTGTTTCAATTTTTTGTTTGAGTTGGCAAGT TTACAATTGGATGTTGTAGACTTTTTCTTTTATTTATTTCTGGAAGATGTTGGCACAATTTTGAATAAAGCCTTTATTCT GCAGTTAAGCTGGACTCAGTTGACGTCGTGTGCTTAGAACCTGGATGCATGAAACATTTCACTAATGCCCAGTGTCTTAG AGACCATGTTAAGTCCTGCCATCAATACGTGACTTGTGACATTTGTGGGACTAAGCAACTGAAGAAGAATTTGAAGAGGC ACCTCCGTGCACATGAAGCCGGCAGTTCATCAGAGTTGTTTCAATGTGAATATGAGGGTTGTGACTGTACATTCTCATCA GTAAGACTCCTTAGTCTTGAAAGTGCACGATGTTTATTCTAACTGAATTCCCAATTTGGTTACAATTTGAACTTTCTTCT AATTTTTCTATTGCGTTGTGATTGTGCGTCAACAGAAACCTAATCTTCACACGCATGAGAAGGCTGTGCACTTCAAAGAA AAACCTTATGTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCATACAAACATGTGAGAGATAACCATGAACAAACTGC CAAACATGTTTTTACCCTTGTAAGCTCTTTTTTCTTGCTATAGTCGTGCCAATCATTTCCTGACGAGTGATAGCTTGTTC TTTTGCATGAATATACTTATTAATATTTCCTTCATACAGGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCTAGGCC CAGAGGAGGGAGAAAGAGAGTATGCCCTACTGTTGAAATGTTAATTAGGAAGAGAGTTACCCCACCAAGTCAATTAGAGA GCTGGTTACATATGCAGGATAGTGAATAAGATTCCCTGCGCTTTATGTGTTCGTAACCATTTTCCAAATTGAATTAGGCA AAAGGTAAATCTAATGGCCTTGGCTTGTTTTCACTTTGTGCATTGAATAGAAGTTATACATATATTAAAGATCATGGTTA GTGTTACATATATAGGATTCGAACAACAATGTACTGTGATGATCGCGAGTTAGTGTCAAATTATGATGTATTTGCATCAG ATTCAATGATAGCCAATCTGCAAGAAGTACACTGTGATTATTATCTTAATGTATAGAAAAATGAAATATTGTTCTCTCCT GTGTTTCGGTGATTGCTTCCTATTTCTTGTATCTATTGTTTGCATTTCCATGTTCTGTTGTTTCGATAACATAGTAAGGA GAGCGGACCTCTGAACAACGTGACATCGGAAATATAAATTGCACATGTCAGGAATCGATTCCTGAACCGCCCTCTACCCA ACCCAATGTCCCCAGCACGGAGATGTGGGCTGTTGTATGTTCTTTTACAATTTGACATAGATTTATAATTCACATGTTCC AATATAATTGACCAACAGCAAAAACGGTACTGGTACTGTCTGCACCTAAGTTTCTCC
CDS sequence (LotjaGi3g1v0109000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGAATCTATGGAATCTGAAGAAATCCCCAAATTCCATGATATTAGACGCTATTTCTGTGAATACTGCGGTATCTG CAGATCCAAAAAAACCCTCATCACAGCTCACATCAATTCACACCACAAGGAGGAGGTGGAAAAAAGAGTTGAAGGAGAAT CTGAAACAGAGGCTTCAAAGCCTAAAACTTGTGAGCAATGTGGTGCTAGTTTCAAAAAACATGCCTACTTGTTGCAGCAC ATGCGAAGTCATTCGGCTGAGAGGCCATATGTGTGTACTGTTGATGATTGTAAGGCAAGTTACAGAAGAAAGGACCACTT GACTCGCCACCTTTTACAGCACCAGGGGAAAACTTTCAAGTGTCCTATTGAGAATTGCAACAGTAGCTTCTCTATACAAA GCAATTTGAAAAGACATGTCGATGAGCTTCACGATGGCAAGTCTACCTCTACTTGTGTTGAAAGTCAGAAGCAGTATGTG TGTCCAGAAGTTGGCTGTGGAAAGGTTTTCAGATATGCATCAAAGCTACGGAAGCATGAAGATTCTCATGTTAAGCTGGA CTCAGTTGACGTCGTGTGCTTAGAACCTGGATGCATGAAACATTTCACTAATGCCCAGTGTCTTAGAGACCATGTTAAGT CCTGCCATCAATACGTGACTTGTGACATTTGTGGGACTAAGCAACTGAAGAAGAATTTGAAGAGGCACCTCCGTGCACAT GAAGCCGGCAGTTCATCAGAGTTGTTTCAATGTGAATATGAGGGTTGTGACTGTACATTCTCATCAAAACCTAATCTTCA CACGCATGAGAAGGCTGTGCACTTCAAAGAAAAACCTTATGTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCATACA AACATGTGAGAGATAACCATGAACAAACTGCCAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAACAATTC AGGTCTAGGCCCAGAGGAGGGAGAAAGAGAGTATGCCCTACTGTTGAAATGTTAATTAGGAAGAGAGTTACCCCACCAAG TCAATTAGAGAGCTGGTTACATATGCAGGATAGTGAATAA
Protein sequence (LotjaGi3g1v0109000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVESMESEEIPKFHDIRRYFCEYCGICRSKKTLITAHINSHHKEEVEKRVEGESETEASKPKTCEQCGASFKKHAYLLQH MRSHSAERPYVCTVDDCKASYRRKDHLTRHLLQHQGKTFKCPIENCNSSFSIQSNLKRHVDELHDGKSTSTCVESQKQYV CPEVGCGKVFRYASKLRKHEDSHVKLDSVDVVCLEPGCMKHFTNAQCLRDHVKSCHQYVTCDICGTKQLKKNLKRHLRAH EAGSSSELFQCEYEGCDCTFSSKPNLHTHEKAVHFKEKPYVCGFPDCGMRFAYKHVRDNHEQTAKHVFTLGDFEEADEQF RSRPRGGRKRVCPTVEMLIRKRVTPPSQLESWLHMQDSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 351 | 342 | 7.9E-126 | – | |
| PANTHER | 10 | 351 | 342 | 7.9E-126 | – | |
| Gene3D | 12 | 90 | 79 | 2.9E-10 | – | |
| SMART | 19 | 41 | 23 | 25.0 | ||
| MobiDBLite | 39 | 61 | 23 | - | – | |
| MobiDBLite | 39 | 60 | 22 | - | – | |
| SUPERFAMILY | 60 | 114 | 55 | 7.56E-12 | ||
| SMART | 62 | 84 | 23 | 0.021 | ||
| ProSiteProfiles | 62 | 89 | 28 | 14.274 | ||
| Pfam | 63 | 84 | 22 | 0.002 | ||
| ProSitePatterns | 64 | 84 | 21 | - | ||
| SMART | 90 | 114 | 25 | 0.0029 | ||
| Pfam | 90 | 114 | 25 | 7.9E-4 | ||
| ProSiteProfiles | 90 | 119 | 30 | 10.076 | ||
| Gene3D | 91 | 117 | 27 | 1.5E-8 | – | |
| ProSitePatterns | 92 | 114 | 23 | - | ||
| SUPERFAMILY | 100 | 157 | 58 | 4.46E-8 | ||
| Gene3D | 118 | 156 | 39 | 6.7E-9 | – | |
| SMART | 119 | 144 | 26 | 0.013 | ||
| ProSiteProfiles | 119 | 149 | 31 | 11.552 | ||
| Pfam | 119 | 144 | 26 | 0.0052 | ||
| ProSitePatterns | 121 | 144 | 24 | - | ||
| SUPERFAMILY | 156 | 183 | 28 | 1.86E-5 | ||
| Gene3D | 157 | 183 | 27 | 8.1E-8 | – | |
| Pfam | 159 | 183 | 25 | 2.1E-4 | ||
| SMART | 159 | 183 | 25 | 6.0E-4 | ||
| ProSiteProfiles | 159 | 188 | 30 | 11.198 | ||
| ProSitePatterns | 161 | 183 | 23 | - | ||
| SMART | 191 | 216 | 26 | 1.3 | ||
| ProSitePatterns | 193 | 216 | 24 | - | ||
| Gene3D | 218 | 273 | 56 | 4.9E-6 | – | |
| SMART | 219 | 240 | 22 | 11.0 | ||
| SUPERFAMILY | 230 | 288 | 59 | 1.55E-9 | ||
| ProSiteProfiles | 249 | 279 | 31 | 12.715 | ||
| SMART | 249 | 274 | 26 | 0.0031 | ||
| ProSitePatterns | 251 | 274 | 24 | - | ||
| Gene3D | 274 | 303 | 30 | 5.2E-5 | – | |
| SMART | 280 | 306 | 27 | 5.7 | ||
| ProSitePatterns | 282 | 306 | 25 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0109000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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