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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0112300 |
| Transcript ID | LotjaGi3g1v0112300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT3G54480.1 SKP1/ASK-interacting protein 5; Swiss-Prot: sp|Q94FT2|SKIP5_ARATH F-box protein SKIP5; TrEMBL-Plants: tr|I3RZX5|I3RZX5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0112300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:13843749..13847403) extracted from Lotus japonicus Gifu genome v1.2.
GAGGAGGCAAAGATTCAGACTCGAGAGGAGCACGAGGGTGAATGATGGAAGAAAATAGCAGAGATAATCGGAGACAAGGG AAGAGATGGCAAAGGAAAAGAACCTCTTCATCTTCATCTTCATCTTCATCATCTTCTTCTTCTTCTCACATCAATAATCT CGATGATGGTTGTCTTATGCATATCTTCAGCTTCCTCCCCCCTATTCCAGGTACAAACCAACCTTCTTTCCTTTTTTACA TACTCCCATTAAATTTTCAATCTTTTACTTCAATTCAACAATACCCAGATTTTTGTTTTGTCAAATTTTCTCATTTTGAT GTGTTTTTTGGGATTTAGTATTTTACCGCATGGACTAGGTTTTGAAATTGGGGGTTTTTATATATGTTTAAGGATTATTA CTAATTGGTGTTTAGCATTGTTTGCATTTTGTTGTCATTTGAGAAATCATTAAATTAACATAGTAGAATTTTAGGCTTGA ACCAAGTGTGATGATGAGGTATTATGTCAAACTTTGGAGCATAAATTTGGATATTTGTAGAATATTTAATCTCATGGGAG TAGCTTAGTTTAATAAAGCCTGTGAAGGAAATTTGACTACTTAATCACTACCTACTCGAATTCCGCAGTGGCTTTTCGAA TTCTTAGGCTACTTTCTTTTGGAATCATGTCTTCACAAGATTTCCTAGCATGTGAACTGTTGGAAGAGGGATTTCTACTC CTTGAGTGGTTGGATTCCTGTTGCTCAATCTTACTTGCAGAGTGTTCCCCTCTATTTTGTCTCACTTTTTGTATTAGACT GTTTCAAAAGATGGTGGAAAAAATTATGGGGTTTCATTTAGTATGGTTTAGGAGAACAGAGAAGAGATCCCTTGGTGCTT TGGGAGATATGCTGCACACGTAAAAAGAGATTAGGGATTGAATTTTCAAAATTTGAGGTCTGAAAATATTGTCTTGGCAT TTTCAGCTTAAATGAGTATGGTGCTTTCCTTTAGTAACTGCTTCATTTTGGCCAATGGTACCAAGTTATTCTACTTTGGC ACAATATAGTGTGTTTTAAAAATATTTCAATCACTTGTTTGTAGAAAGATAGAGCAGGTGGCTGCTCTGCTGCATTCTTA GTTTTCTTCACTTGCTCTTCTTTTTTTTTTTTTTTTATGTTTGCTTGTTTTAGAGTGTACTTTATCCTTTCTCTCAATGT ACTTGGATCTTCTCTTTAATTAAGCTTTTTTTTTCATTAAAAATACTATAAAAGGAACAAATAACATATAGTGGAGCATT TCCCATCACAAAGCTGCTATTGAGTTTGCAGATCGCTTTAATACCGCACTCGTTTGCCACAGATGGAATTACTTGGCATG TCATCCTCGCCTGTGGCTGCGTGTAGATCGATCAGTCAAAGACTTATCTCAACCTGGTGTTTTCCCAAATATTGAAACTG CTGTTTCTGCTTCAAGGCATGCAAAGTTAATGTTATTTGTGTATCATTTCAGATTTTTCCTCAGGTTGTGGTTCTGATTG CCGCTTTTTTTCTTACAGACCGGGGGATACTATTTTAATAGCAGCTGGTGGAAGTCATCATACCTCAAACATTCAAATAA AGAAACCACTCTGCTTGGTCAGTTATCTACACTTATTGTATATGGTGGTGGGAGAATCTAATAAATAGTTAGCTGCCTAG TGACATTAACAAACTGGAGCATATTTTAAGTGATTGTTAAATCTTTGCTCTTCTGGAATAGAGTTTCCGTGGAAAGAGAT TCATCTGTTTTTAGGATTTTTACCATTTTTCTTACATATGAGTACAATACATGTAAGTTCTCTCTTTTTCAGTAGACCAA AGTTTAGGGGGAGAGGAGGGTTTGTCCTATTCCATGGTCAGAGCATCCGACTAGCCTCAGCTAGGGCTTATGGTGGTCAT AGAGGGCCTACCAATGAATGAACTTATTGAATCTATACATTGTGGATTAGATGTAATGATGAACACTTGTTGAGAAATTG CTTTCATTTGGGTGATGGGAAAGAATATCCCTGAAATTGGAAATTGCTTTCATTAGAGGATTATTAAGAGACCATAATGA CTAGAACCTTAGAAATGCAGTCATAACACAAGCACTGCAAGAACTGTTCAGACTTCAGTGCCAAAAAGAAGAATTTGCTG AGTCCAATGCAATTGCAGTCACAATAGAACCACATCAATGGAGAATAAACAGCGCTACTTCTTTCTGCAACTAATCATTA TCCATGAAATGATTCTGAGGCTGATGACATGTTTGGAAGCCTTCTTTCTAGGAAGATGATTCTCAGACTTCCAATCCTAG CAGAGAGGAAATAGGATGCCAAAACATTTTCAAACATGTTTTTTTACCTTGATTTTCTTAAAAAAATTCAGAACTGTCAG AAGATTTTATAAAAAAGACCTAAAACAGAGTAGCAGACTGTTACTGATAATTGGTGATGGAAATTATTTCCATATTTGCT ATCCCAAAATCAATGTTCTTTGTTCAGATTGGTGCAGGTGAACTTCCAGATGACACAACGCTCATTTGTTCGCGAGGTTC AGACAGGTTTGCATTCTTTACATTTTGATTCTGTGTAATAAACTTTTGAAGTGCTAACTAGGAGTCACCTCCATGCTGCT GGATTTCAATGGATAAGATTCCTGGCCAAACAGAATGCTTCTGAGCCTCATTCTATGAATGTTGGTTCATCATAAAGGCA TCTCTGTCTATCACTGGATGTAACTTTTTATAGAGTTTACCATCTCAATGACCATTATCCAGCAGCCGGGAAAAAAACTC CTTGAAAAGTACCACTGAAATGTTTCATTTTCTGCAACGCATGGTATGCGCATTTCTTGTTGTCTGAGCAGTGCATTGGA GCTCCTTTCCACCTGCAAATTAGCAAACCTGACTGTGAAGGCAGAGCTTGGTTGCTGCTTGCTACATAGAAAGGGAAGGC TAACTGTTGATGGATGCATTCTACAATGTGAATCTAATCCCCTGGATTTTCTTTCATGCCCCATTGTGAGCACAGCGAAT AGCAGTGAGGTGCTTCCATCGCAAACGAAGAGCAATGGTGGTGGTGATGGTGTGTTTGTTTCTCAAACCCGCATTGAAGG AGGTGCCAAAGCTGTTGTGACAAGTGGGGATCTGGCCCTGCAACGAGTCCGAGTGATTTATGCCCGAACTTCGCTTCTTT TCTGGTTTGATGTGGAGCAAATGTGACCAAAGTGGTCATCACAAGCCTTGTGATATCATCTGTTCTTTTAGTTACCTAGA CGGCTAGACTTGTCTGTAATTTATTTTAGGAGTCACTATAGTTATGATTAATCTTTTACCGGTGTTTTTTCTATTCTTGT TATGTACCATTTGGATGGGTTACATATGTATCAAAAGTTGAAATTTCTGTGATCTTTAAATAATGGGTCGTCTAAATTTG GTTGATTTGGACAAAATGGTTTAACTTTTATGAAAAGTTATCAAATTAGTGAACGTTTTAAAAACAATTGTTGTGTGAGT CGTATTTAGTGGATATGACTTATCTTTTTTATAGGTATAATATGCTTTTGTTTTTATGCTTGCATTTTTGTGGTGTCAAA CTCCCCACTCATTGCTGCGAAGCCACTAGAAATCACTCTTTTTAACAGAAGTGCA
CDS sequence (LotjaGi3g1v0112300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAAGAAAATAGCAGAGATAATCGGAGACAAGGGAAGAGATGGCAAAGGAAAAGAACCTCTTCATCTTCATCTTC ATCTTCATCATCTTCTTCTTCTTCTCACATCAATAATCTCGATGATGGTTGTCTTATGCATATCTTCAGCTTCCTCCCCC CTATTCCAGATCGCTTTAATACCGCACTCGTTTGCCACAGATGGAATTACTTGGCATGTCATCCTCGCCTGTGGCTGCGT GTAGATCGATCAGTCAAAGACTTATCTCAACCTGGTGTTTTCCCAAATATTGAAACTGCTGTTTCTGCTTCAAGGCATGC AAAGTTAATGTTATTTGTGTATCATTTCAGATTTTTCCTCAGGTTGTGGTTCTGA
Protein sequence (LotjaGi3g1v0112300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEENSRDNRRQGKRWQRKRTSSSSSSSSSSSSSSHINNLDDGCLMHIFSFLPPIPDRFNTALVCHRWNYLACHPRLWLR VDRSVKDLSQPGVFPNIETAVSASRHAKLMLFVYHFRFFLRLWF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 16 | 80 | 65 | 4.6E-22 | – | |
| PANTHER | 16 | 80 | 65 | 4.6E-22 | – | |
| MobiDBLite | 19 | 37 | 19 | - | – | |
| SUPERFAMILY | 25 | 103 | 79 | 3.27E-16 | ||
| Gene3D | 30 | 120 | 91 | 3.5E-14 | ||
| SMART | 40 | 81 | 42 | 1.3E-4 | ||
| Pfam | 44 | 82 | 39 | 1.4E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0112300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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