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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0115400 |
| Transcript ID | LotjaGi3g1v0115400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dirigent protein; TAIR: AT2G21100.1 Disease resistance-responsive (dirigent-like protein) family protein; Swiss-Prot: sp|Q84TH6|DIR23_ARATH Dirigent protein 23; TrEMBL-Plants: tr|I3ST83|I3ST83_MEDTR Dirigent protein; Found in the gene: LotjaGi3g1v0115400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14160259..14161451) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAACCTACAAATATAGGTGACACTCTGCACAAACTTGGTAGAAACTTATCCTCCAACTAATGGCTTCTCCTCTCAAA TTCCTCTTTCTCCTCTCACTCACTCTCACTCTCATCTCTACTCACCTCACCACCACCCATGGAGCATTCTCAGAACAATC CCACATCGAGTTACCCACAGAACAACAACCACGCACAGAGAAACTAACCCATCTCCACTTCTTCTACCACGACATCCTAG AAGGCAAGAACCCCACGGTGGTGCAAATCATCGAACCATCAGCAAGCAGCTTCGGAACCACTTTCATGATGGACAACCTC TTAACTGAAGAACAAGACCTGAGCTCAAAGCCTGTTGGGAGAGCACAAGGGTTATTTGGTTTGGCTTCTTTGGAGGACCG TGGTATGGTGATGCTAATCAATCTTGCTTTCAGTGAAGGGGAATACGCTGGCAGCACACTCAGCATGCTTGGGAGGAACC CTGTTCAGAACACGGTTAGGGAACTCCCCATTGTTGGTGGCACCGGGGTGTTTAGGTTTGCTAAGGGCTATGCAACCGCT AAGAGCCTTTGGGAACTTTCCACGTCGGAACATTTTGTCGTGGAGTATGATATCACTGTGTCTCATCCTTAGAACTTTCA CAACGTAAGGACAGGCTCCAATATACTTATGGTGATTAGTTTATGTTTTAAATAAGTTCACATGTTTTTAAAAAGTGAGA GAAATGTAATAATTAAATTTTTAAAAAATAAAGATTATAATAAAAGGATGGTACAGAGAGTGTTTCTCATTCCTTAAACT TTTGCTACTTATTGTTTTTAGGATGTATGTTATTGTGTATTTGACATTAGTCTTTTCTACTTACATGTGAATTTTGGTTT ACCGCCGAATAAAATTTTAGTTCTTGTGCGAGGAAAGTAAAGTAAGCTATTAAAACTAATGAATAATAAGAACTAAATCT CACATTGATTAGTTGATGATAAATACAATAGTTTAGAAGTTGGAGGATTGCACTCTCATTGCTTTCTGGCATTTTGGGTT AAACTTTGCCGCTAGCTCCAGCACACCACACTTCTAGACTCGCACTAGCATTTTGGTCAACACACCAAACCTAACAACTT GTATCACAGCCCACTTGGCCAATACGAAGAATTTACGGGAAAAAAAACCCAAAAGAAAAAATGTTACTCAAAA
CDS sequence (LotjaGi3g1v0115400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTCCTCTCAAATTCCTCTTTCTCCTCTCACTCACTCTCACTCTCATCTCTACTCACCTCACCACCACCCATGG AGCATTCTCAGAACAATCCCACATCGAGTTACCCACAGAACAACAACCACGCACAGAGAAACTAACCCATCTCCACTTCT TCTACCACGACATCCTAGAAGGCAAGAACCCCACGGTGGTGCAAATCATCGAACCATCAGCAAGCAGCTTCGGAACCACT TTCATGATGGACAACCTCTTAACTGAAGAACAAGACCTGAGCTCAAAGCCTGTTGGGAGAGCACAAGGGTTATTTGGTTT GGCTTCTTTGGAGGACCGTGGTATGGTGATGCTAATCAATCTTGCTTTCAGTGAAGGGGAATACGCTGGCAGCACACTCA GCATGCTTGGGAGGAACCCTGTTCAGAACACGGTTAGGGAACTCCCCATTGTTGGTGGCACCGGGGTGTTTAGGTTTGCT AAGGGCTATGCAACCGCTAAGAGCCTTTGGGAACTTTCCACGTCGGAACATTTTGTCGTGGAGTATGATATCACTGTGTC TCATCCTTAG
Protein sequence (LotjaGi3g1v0115400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASPLKFLFLLSLTLTLISTHLTTTHGAFSEQSHIELPTEQQPRTEKLTHLHFFYHDILEGKNPTVVQIIEPSASSFGTT FMMDNLLTEEQDLSSKPVGRAQGLFGLASLEDRGMVMLINLAFSEGEYAGSTLSMLGRNPVQNTVRELPIVGGTGVFRFA KGYATAKSLWELSTSEHFVVEYDITVSHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 2 | 188 | 187 | 5.0E-91 | – | |
| PANTHER | 2 | 188 | 187 | 5.0E-91 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 30 | 12 | - | – | |
| Phobius | 31 | 189 | 159 | - | – | |
| Pfam | 49 | 186 | 138 | 1.1E-47 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0115400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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