Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0117000 |
Transcript ID | LotjaGi3g1v0117000.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | IQ domain-containing protein; TAIR: AT5G13460.1 IQ-domain 11; Swiss-Prot: sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14; TrEMBL-Plants: tr|I1LL80|I1LL80_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0117000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14335615..14339379) extracted from Lotus japonicus Gifu genome v1.2.
TGGGTATCAGATCCTATAATAAAAGAATGTTTGCTGATTTCAAAGCTGCTCCATTTGATTTTAAGGACAACACTGCTTTT TTTTTCCATGTACCTTAGCTCCCTTAAACGGTGATTATTGTCCCTTTTCAAAGAATTTATGGAATTTCATAACATGGGTA GGTAATCAACTTGGATGTTGGATCTCACTTAATCCAAATCACATGCATCATTTTTATCCTTCAACTATCTTGATTTGTGT GCATTAATGTTAAGATTACTTTTAAAGCAAGGCTCTGATTAACGTGCATGTTTTGGTCTTTGCAAAGACTAGTTGTGCCT ATAAGAAGCTAACTCTATGGCAAGTTCTGCAAATTGGTCCTTCTTTTCCGGACAAGTCTAATGTTGAGTTTTGCACAAAT CCATTATTTTTTATTGAACACATGTATCTTTACTTAAGCCGGTTCAGCTGAGTTTGTTTTTCATATATATTCAAGACTCG AATCTGAGAATTTGCTTAAGAAGAACCAAACATCTAGCTACGACTTGAACCAACCACCATCAGAAGCTTCACAAATCTAT TATTTAAGTCAGTTAAATGCCATCTTTGTGATTTTCACCCATCTACTTATTCAAACTGAGGATATTTGCTGTGTAGAAGA GGATTAATTCTTATGAGCATTTTTTTTTTCAGATCACAGAAACTGAAGCTGGTTCATGTGATATAGTTAAATGGCCAAGG GCTGGTTTAGCATGGTGAAGAGGCTCTTTATATGGGATACACATTCCACACAAGAGAAGGTAAAATTTCTTGCTTCTTTG ATTAATTCCTTAAGTAATCTTGTTGTATTGCTCATGAGAGAAAACCTGTTTTCAGAAGGAGAAAAGAAGGAAGTGGATAT TTGGGAGAGTAAAGAACAAGAGATTGGCTACAATTGAAGCCCCACCACCATCAAAAGAAACAAGACTGAGTGAAGCTGAG GAAAAACACAGCAAGCATGCTTTGAAAGTGGCTATTGCCTCTGCTGCTGCTGCTGAAGCTGCTATTACTGCTGCTCATGT TGCTGTTGAGGTTGTTAGGCTCCAATCTGCACACCAATGTAGGGACAAGTCAGAAGAGTTTGAAAATGTTAAAACTTGGC ATGAGGCTTCTCAATTCACATACAATTTCCAGAGGAAGATTGAAGAATCCTCAGCCATCAAAATTCAAACAACATTTAGA GGTTACCTAGTGAGTTTGTCCAACCTCTCATCTTTGATTTAATATCAGCTTAAATATTCTGTCCACCATCTTCTGTTTTG CTCATTGATGGGTTCAATTAAATTTGAGAAACAGATAGTGTGGATTTGAATACAACTTTGGTTAAGGTGATCGGACTTTC ATCCTATTCCATAAGAAGAATTCTGTTCACTTTTTCTGCTAAAGTGAACCCAAGTGCCAACAGATATCCAACACACCTAT AGTTAAGGATGCAAAATCTCAAGGTGAACCCAGGTTTCAGGAGCTGAAACTTAGTAGAAAATGACCAATTTACTGACTCA CTTAAATTCTTCAGCCAATTACTGATTTCCCAAACAATTGTAAGATAATTTTGGAAGATAAACTTGATTTCTATATTGAA AATTTCATATGTTTAATTTCTATGATAGGAAGATAAACAAGGAAAATTGGAGAATGACAGAAAAAAACAAAGAGAGAAAG TTTAGTAGATGAAATTAAGGAACTGTAGTCACTCTACTATATTATTAAACATCGTATGTCTTATTAATTGGGGTTTGGAT TCATTCACACTGACTTTCTCTTCTATCACAATTCCACTTACTTTCTATTTTTATCTCTAGCTTCTTTTTTTATCAGATCA CTTATCATATCTCTCGGTTCTCTCTCTCTGCTAATATTCTTATCTTTATATGAATGTGGGTACTAAGTGGATTTGGAGTG TTGATGAAATTTTGTTTCCTATTAACTGAATGGTAAGACATTGCAGGCAAGGAAAGCTTTGAGAGCATTGAAGGGAATAG TGAAGCTTCAAGCTATCATTCGTGGCAGAGCTGTTAGACGCCACACTATTAGTACTCTGAAGAGCTTGCAGTCCATAGTA AATATCCAGTCCCAGGTCTTTGCAAGAAATCTCCAAATGGTTGGAGGAAGATTGGATTGTGGTGAAAATGAAGAGATGCA GGATTCAAGAGACAAGATAATAAAGGTAGGCATAGCAAGTTAAAATTTATCATTAGTTTTCCTCAAATTGCAAAACTGAA GTTTCACTTCAAACACCATAATCCACTCTTCATTGTGAATGCTTATAAACTATGTTACTTATGTTAAGAAGTCCACCATT GATTCACTAGAGATATGGTCAAAATCGTCCTTTAGAGTAGCTCTCACCTCTAAGCTAGCTTTTTTGGTAGGGGTAGACCT AACTCGAATTCAAAGTTGGTATCATAGAACATCCATTTATTAGGGACCACCCATATATGGACCACTAGCTGGTGTTCATT CTTGTAAATTTCACGCTTCAGTGTCCAACACTAGATGTGAGGGGTGTGTTGAGAAGTCTCACATTAACTAAATATCCCTA AAATAGTTCTTATAAAGGGTAGAGAACTCTCACTTCTAAGATAGCTTTTGGGTAGAGTCAGGCAGTCAGCCGTAACCTGA ATTCTAAGAACTTACATGTTATCAATAATTCAGATTGAATTTGAAACATATTTTTCATGTTTTTCAGATAGACTCCAACA GTGAGAGAAGGTGGGATGACAGTATTTTATTGAAGAAGGAGGTGGATGCCTCTAGCATACACAAGAAAGAAGCTGTGCAT AAGAGAGACAGGATAAAAGAATACTCTTATAACCATAGAGTAAGCTCTTAAACCCTTTTTTGCTCTTTTGAAATTTTACT CATTAAGGAACTCATACTAAAGTACAAAAACCTCTCAGAGGTCAGCTGAATCAGAAAGAAATAAAGTAAATGGAAGATGG AGATACTGGATGGAAGATTGGGTCGACACCCAACTTTCCAAGAGTAAAGAACTTGAAGATTTAGAATCGGTTTTCAGCTC ACATTCTAGAGCTGGTGAGGAATGTGGAAGAAGATCACAACTCAAGCTAAGACATGTTCAGAGAACAAATCAAGTTGAAG GTTTGGATTCTCCAATACTTTCTTCAAGGAATCGCTCATTTCCAAGTTCTCCTGCATTTCCTACATACATGGCTGCAACA AAATCAGCACAAGCAAAAGTGAGATCCGCAAGCTCTCCAAAAGTGAGGATAGGAGGGAATTTGGACATGAACTCTGATTG CTATTCTCCATGCAACAGAAAGCTATCTATTGTTTCTTCCATTAACCATGAAGTTCTCAATTATGGTAGGACAAGCAAGC TTAGCAATAATCAGCAAAGATCTCCTAACTTAAAGGGTCTTTCAAGGCCTTTAAAATCAAGCCAGAATATTAAAGATCTC AGTATTAATTCAGACTTCTCAACTCACAATTGAGATCAACAAAGTAAATTTCAAATGAAGTTATAAATACTGGTGTTGCA TCCACTACTATAGTTTCATGTTACCATGAGAGGGCTTGAATTGAAGTGAGAATCTTTTTTGGTCTCATGTATATGCCAGC ACAAATTATACTTTTAGTTGAGTGGGCATTGGTGTGACAGAAATTTGTTAAGTTCTTCACTGATTTGTTTATTTCTTACT AAACCTTGTCTGATGTATTTTGTGGTGTTATATTATACATAACCAATGTTCCTGGTTTTTGGTTTGAGTAAATCATCAAA TTGTC
CDS sequence (LotjaGi3g1v0117000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAGGGCTGGTTTAGCATGGTGAAGAGGCTCTTTATATGGGATACACATTCCACACAAGAGAAGAAGGAGAAAAG AAGGAAGTGGATATTTGGGAGAGTAAAGAACAAGAGATTGGCTACAATTGAAGCCCCACCACCATCAAAAGAAACAAGAC TGAGTGAAGCTGAGGAAAAACACAGCAAGCATGCTTTGAAAGTGGCTATTGCCTCTGCTGCTGCTGCTGAAGCTGCTATT ACTGCTGCTCATGTTGCTGTTGAGGTTGTTAGGCTCCAATCTGCACACCAATGTAGGGACAAGTCAGAAGAGTTTGAAAA TGTTAAAACTTGGCATGAGGCTTCTCAATTCACATACAATTTCCAGAGGAAGATTGAAGAATCCTCAGCCATCAAAATTC AAACAACATTTAGAGGTTACCTAGCAAGGAAAGCTTTGAGAGCATTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGT GGCAGAGCTGTTAGACGCCACACTATTAGTACTCTGAAGAGCTTGCAGTCCATAGTAAATATCCAGTCCCAGGTCTTTGC AAGAAATCTCCAAATGGTTGGAGGAAGATTGGATTGTGGTGAAAATGAAGAGATGCAGGATTCAAGAGACAAGATAATAA AGATAGACTCCAACAGTGAGAGAAGGTGGGATGACAGTATTTTATTGAAGAAGGAGGTGGATGCCTCTAGCATACACAAG AAAGAAGCTGTGCATAAGAGAGACAGGATAAAAGAATACTCTTATAACCATAGAAGGTCAGCTGAATCAGAAAGAAATAA AGTAAATGGAAGATGGAGATACTGGATGGAAGATTGGGTCGACACCCAACTTTCCAAGAGTAAAGAACTTGAAGATTTAG AATCGGTTTTCAGCTCACATTCTAGAGCTGGTGAGGAATGTGGAAGAAGATCACAACTCAAGCTAAGACATGTTCAGAGA ACAAATCAAGTTGAAGGTTTGGATTCTCCAATACTTTCTTCAAGGAATCGCTCATTTCCAAGTTCTCCTGCATTTCCTAC ATACATGGCTGCAACAAAATCAGCACAAGCAAAAGTGAGATCCGCAAGCTCTCCAAAAGTGAGGATAGGAGGGAATTTGG ACATGAACTCTGATTGCTATTCTCCATGCAACAGAAAGCTATCTATTGTTTCTTCCATTAACCATGAAGTTCTCAATTAT GGTAGGACAAGCAAGCTTAGCAATAATCAGCAAAGATCTCCTAACTTAAAGGGTCTTTCAAGGCCTTTAAAATCAAGCCA GAATATTAAAGATCTCAGTATTAATTCAGACTTCTCAACTCACAATTGA
Protein sequence (LotjaGi3g1v0117000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKGWFSMVKRLFIWDTHSTQEKKEKRRKWIFGRVKNKRLATIEAPPPSKETRLSEAEEKHSKHALKVAIASAAAAEAAI TAAHVAVEVVRLQSAHQCRDKSEEFENVKTWHEASQFTYNFQRKIEESSAIKIQTTFRGYLARKALRALKGIVKLQAIIR GRAVRRHTISTLKSLQSIVNIQSQVFARNLQMVGGRLDCGENEEMQDSRDKIIKIDSNSERRWDDSILLKKEVDASSIHK KEAVHKRDRIKEYSYNHRRSAESERNKVNGRWRYWMEDWVDTQLSKSKELEDLESVFSSHSRAGEECGRRSQLKLRHVQR TNQVEGLDSPILSSRNRSFPSSPAFPTYMAATKSAQAKVRSASSPKVRIGGNLDMNSDCYSPCNRKLSIVSSINHEVLNY GRTSKLSNNQQRSPNLKGLSRPLKSSQNIKDLSINSDFSTHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 434 | 433 | 3.0E-212 | – | |
PANTHER | 2 | 434 | 433 | 3.0E-212 | – | |
Gene3D | 125 | 179 | 55 | 5.9E-6 | – | |
SMART | 125 | 147 | 23 | 4.9E-5 | ||
ProSiteProfiles | 126 | 154 | 29 | 10.53 | ||
Pfam | 128 | 147 | 20 | 5.8E-6 | ||
SMART | 148 | 169 | 22 | 410.0 | ||
Pfam | 150 | 167 | 18 | 0.26 | ||
ProSiteProfiles | 150 | 177 | 28 | 7.62 | ||
Pfam | 329 | 417 | 89 | 2.4E-12 | ||
MobiDBLite | 403 | 442 | 40 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0117000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…