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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0118100 |
| Transcript ID | LotjaGi3g1v0118100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein dnaJ, putative; TAIR: AT2G35795.1 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q8RV04|TI141_ARATH Mitochondrial import inner membrane translocase subunit TIM14-1; TrEMBL-Plants: tr|B9MT90|B9MT90_POPTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0118100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14461044..14464172) extracted from Lotus japonicus Gifu genome v1.2.
GTGTTATCATGAAAAGTCAATGAAATGTTTTTTTTACATCGAAATAATAAATTGATCTCTAGATATCTCCCTACTCAACC CATATGTCTACTAGAAATGAATATCAGGGAGGTCGGTGTAATTTCCCCGGAATATTTTAACACGTAAACTCCTTTTGTTC TTTCCTGCTTTGGTTCCTCAACTCAACCCTCTTCGCAGGCAAAACCCTATTCTATACGAATTACCCATTTTCAATTCTCT ACCTCACAGCCTTGCCTCTCTCGCCGCCGCCAGCCGCCGCGCGCAGGTATCCGTCATCCCCTTTTTTGTTCGTACGCCAC GCTCAGGTGTTCGCCGTCCCCTGTTCTCCGTGCTCCGCAATCATGGTATGTCTATTTTCCTTGTTGCTTTACATTCTGGT TTCGATCTAAACAACCCCTATTTGCCTTAACTTTTTTCAATTTTCTCTAGCCTTGTTATCTTGATTTGATGAGCATGATT TTGAGTTTAATTTTCATGACCATAAGCCCCTTTTTGTAGTATTTTCAATTTGTGTTTCTTTTGTGGAACTGAAATTGGAA TTTGGAACAGGCTACACCTCTTATGGCAGGACTTGCTGTGGCTGCTGCAGCTTATGCTGGTAAATATGGTATACAGGCTT GGCATAATCTCAGGAATTTGCCTAAAAAGTTTTATGAAGGCGGTTTCCAGGCTACCATGACTAGGAGAGAAGCAGCTCTC ATACTGGGTGTTAGGTACCGCCATTTGTTTCTCGGTTTAATGATTCTGTATGTTGATTGTGTTAGTAGCTTATTGGTTTA TTGCACTGGTAATTATCTGTAGGGCGTTGTTTGTCACCTTTTAGGTTATGGGGTTAATCGATTGAATTAATGATCAATAT TTCTCGTTTGAAAGAATTTGGTTCTTCTAAAGAGAGGTGTTCATTACTTCATTTAGAGGGTAATGAGTGTTTTGTTCAGG TTGATGTTCCGAAGTTTGGGAATTGGGATTTGGGATAAAGTCAGTAAGAGAGTTGGGATTAAGAGTCACAACCATCTTAG CATGTTGAATACTAGCCTTTCTTGTAGCTTGTTTGTGTGTGCATCAAGTTTCTTTGTTTGATTAGTGAAGCACTCTTAAG CATATAGCTTATGATCTGGTTAGTGTCAGAAATCAGACTGTTAGAAGTGCTATGAAGCACCAATTAACAACTTGTTTACC AGTTTGGTATCCAGGCCGTGTCAATGTCTGATATGGACATCATGTGACAGGATACATCCTTCTCACATTTCTGTTTTTTT CATTCAAATTTAATACTTCTTTCAAACCAACTTGGATATGGTTGATGGTTTAGACTTTAGAGATAATGCACAATATGGTG TAGATACATTGCTCTGTAAATGCAGCATCGGGTGATAAAAGAAACTTCAAAATTTCCCACCTGTTGTGAATTTTAATTTT ATCACTTAGCAGTCGCCAGGGTACTCCCCTAAGGCTTCCAAAAGGCATCTATTGCAGAACATTTTTCCATCAAGGTCACA GTCACGGGCCATTGTTTCTGAAAAACATCGCAGTTATGCCTGTTACCTTCATAGGGCTGCAACCATTTTCTGAGTTATCA AACCAATTATCACGTATTTTTTTTTTGATTTGCCTCTTATCACATCTGATGATGCATATAGGCCAACTTTGACATTTTCT GACAAACCCACTGCACTCCAACATCCACGCCTATCTGTTCTTCCCTTCCAGATTCGGTATCTCATCATTTCAGGGATCAT AGCTTGCAGCTCTCTCACTCACTCTCACATGTTCTTCATTCTCATTTCACATTCCTCGAATTTGTATCTGTTCTTTTTTC CCCAACTTTATTGTTCTGTGTTCACATGTCTGATATATTCTGTATTTTGTTCTTATTAATTTGTTCCTTTATTTATTTTT TTAGAATGGTTTTGTCATTATTGACTTGTTAATCTTCAAGCCTTAGATTGATGATGGTGATTTTAGGTATTTTTTCAGAG CATTTATGTGTATGGTATTAATTATTGATGTTGTATGTATTTATAATCTTCAGGATTGCAACCATCCGACTTTGTCTTTA AGAAACTTTAGTCTTTATGAGCTTGAATTGTGTCTTGCTGTGTTCATATTTTCCCTCTATGTAGTATGGAATTTCACTGG TTAGAATTGGATTTTCGTTCCTAGTCATGACCATGACAATTTTATTACTAGATATATTCTCTTGTTGATTTTCAATTGTC ACTATGGCAGAGAGCGCACTCCAACAGATAAGATTAAAGAAGCACATAAGAGGGTGATGATCGCTAACCATCCAGATGCA GGTGGCAGCCATTACCTTGCATCCAAAATTAATGAAGCAAAAGATATGTTGCTTGGAAAGCCCAAGGGTGGTGGGTCAGC ATTTTGAAGCCTGCAAAAGGCTCTCTTCATTTGGACAGTTCAGGCAATGACATATTTTTGGCCGTTGTTTCAATCATTTC GGGTAGACCCAATTGTATTAGTGACAAAATAGAACATGCCTAGGCATTGATCGAAATGATAAAGCTCTATTGTAACTTGC TTCTTTCATTGAAGTTGAGCCTTGGAGAAAGTTATCAATTAAAGAGATTTTACTTGCACTTTTTTCAATTCTTGTTCTTT CAGGAGCTCCTTTCCCTCTTAAGTTTGGGCGACTTCTATGAATTATGGTGCAAGTATGAAATAGGTCCTGCATGGTGCAC TATTAAAATATCAGTAATCACCATTCATGTATTATTTTATTATTGAATGGCTTAGATGAAACTTTGGCTTTAATTGCAAA AAAAGTCCTTTGCCTTTTGAAATTTTCCATTCTGTAACCCTGATTTGAAAACCCTCAATGTCAGGCTCCAAATTTCGCCG AGGAGCTTCTCATCTTGTTTATCTCTGGTTATTGGTTTTGCGGTCAACAAGAACCTTTTTGTCCTGCCATGGTCGTGGAT GTCCTCTATCAAATTGTTGACCACTGCACCCTTTCCCTCACATCTCTTTCTAGCCTCTATGTCCATCTTGATCTCGTGGA GTTTCGTGGTGCTCCAGCCTTGGATGACCTGATAGGAACCATTATTCTCTTAAAATGACCTATTTTAGAAATAATAATGG CACCGATTC
CDS sequence (LotjaGi3g1v0118100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACACCTCTTATGGCAGGACTTGCTGTGGCTGCTGCAGCTTATGCTGGTAAATATGGTATACAGGCTTGGCATAA TCTCAGGAATTTGCCTAAAAAGTTTTATGAAGGCGGTTTCCAGGCTACCATGACTAGGAGAGAAGCAGCTCTCATACTGG GTGTTAGAGAGCGCACTCCAACAGATAAGATTAAAGAAGCACATAAGAGGGTGATGATCGCTAACCATCCAGATGCAGGT GGCAGCCATTACCTTGCATCCAAAATTAATGAAGCAAAAGATATGTTGCTTGGAAAGCCCAAGGGTGGTGGGTCAGCATT TTGA
Protein sequence (LotjaGi3g1v0118100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPLMAGLAVAAAAYAGKYGIQAWHNLRNLPKKFYEGGFQATMTRREAALILGVRERTPTDKIKEAHKRVMIANHPDAG GSHYLASKINEAKDMLLGKPKGGGSAF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 107 | 107 | 3.1E-62 | – | |
| PANTHER | 1 | 107 | 107 | 3.1E-62 | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 107 | 90 | - | – | |
| Gene3D | 34 | 99 | 66 | 1.0E-24 | ||
| SUPERFAMILY | 38 | 98 | 61 | 1.83E-16 | ||
| SMART | 47 | 101 | 55 | 0.0084 | ||
| CDD | 52 | 96 | 45 | 1.92386E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0118100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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