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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0118600 |
| Transcript ID | LotjaGi3g1v0118600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plasma-membrane choline transporter family protein; TAIR: AT5G13760.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|A0A0S3SJG3|A0A0S3SJG3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0118600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14522250..14525974) extracted from Lotus japonicus Gifu genome v1.2.
CCCAACCCAAGTCTCCAAATTTTACTCCACAAATTGTCCACGTGCTGTGTTTTCTTTCTCTGACACATGAAACAGTATAG TTGTTCTGTAACCACTGCCGCGCGTGTCCCAACGCGCTGTAGTAGCATCTTGGTGGTTCCTCAACAGTACCACCGGTGGG TCCAACGTAGAACAAACGGTGTAAGCAAGCAATAACTTCGTTAAAACTCCCAAGTGAAAAAAACAGCGAAAGAATCCAGT AACGTCATCTTCCAACAACAACATTCTTGTGACACAAAAACACCGCCACAACCACCGTTGTCGCCGCCGCTTTCAAATGG ATGCCGCAGAACCTGCTGTAATGTTCCTGAGCTGTTTCACGTGCTTAAAACTCAAAAGGGTGTTGCAATTTGTATAAAGC TTTACTAATCTTTTTTTTTTGTGGGTAGGTGGTGGCTGAGAGAGAGCATGAAACTGAAGATGGAGAAGAAGAAGTGGGTG CGAGGAAGGAGGAAGAAGGTGTTAGGGACTTGGAGAAAGGGGAAGAAATGGGTGTTGGTGGAGAGAGCAATGATGGTGTT GCTCACAATCACAATGATCATGAAGAGTTTAATCTCTCAAGGTTCAACAGGTTGAACCCCACTAACCCTTTGAGGATTGT CATTAATAGTTCCACTAGAGCTGCAACTCCTTCTCCTGCTGCTGCTGCTCAATCTCAACGTTCTCACCCACGCTCTATTC CAATTCCAACCCAACAACCACAACCACAACCACAACAACATCATCAAGTATGTTCTGTTTTTTTTTTTCTTATTTTGGAT TTTTTACTATGTTTCATTTGTGAAGAAATGGCTTGTTCAATGGAGAAATTTACATTTTTTATCTTGTTGTTAAAGATGAT TTTATAAAGGGGTTCCCTGATTCTTACCAAGTACTTGTGTTATTGTTATTTTTATTTACTTTTTTACTTTTTTAGTTTGA TGGATTATGTTTTCTTTTTCAGCATCAGCAGCAACCAGTGACCCTGAATTCCAGAAAATATACCAATAGAATATCCTTGT TTCTGTTTGTTGTCCACATGTTTATAGCTATTGCTCTTGTGGGTTTTCTTGTATTCAAGGGGGTTCAAGGGCTTATACTA GAATCAGAATCTATGAAGAGGAAAAAGAAAAACATGTTAAAGTTTTTCCTTCCTCAAGTGGAAGCTGCTTCTTTCATGAG CATAATTCTTGCTTTTATTTGGCAACAAGCAATCAGAAAATGGCCCACGTTTATGGTCCATTTCATATTGTGGTTCACTT TTGTGATGTCTCTGGCTGCTGGGATTCTTCTAATTTGCTTCCAAAAGCCTCCCACAGATGGTGTTGGGGTTTGTTTCATT GCTTTTGCAATTGGCAATGGCTTATATGCTTGTTGGGCTAGTAACAGAATCAAGTTTTGTTGTAAGATCTTGAATTTATC ACTTCAACCTTTATCCAAATTCCCTGATTTGAATAAACCCACTTATTACATGCTTGGGGCTGGATTCTTGTGGATATCAC TATGGAGTTTAGCAGTGATTGGATCCTTGAATTTTTACTTTCCCCCTTTGGTAATCCTTGCATTGGTGCTGAGTTTGGCT TGGACTACAGAGGTTATGAGGAATGTTGTTAATATCACTGTTAGTAGGGTTATTGCCTTGTATTATCTGAGGGGAATGCA ATCTAGCACCCAATTTTGTTTTCTGAGAGCGTTGACCCGGAATCTTGGAAGTGCTTGTTTGGGGTCTCTCTTTGTGCCTG CAATTGAAGCCCTGAGAGTTGTTGCACGGGCGCTGAATTTGCTTGAGGGAGAAGATGAGTTCATGTTTTGTTGTGCTCGT TGTTGTTTGGGAGTCATGGAATCCATTTTCAGAAATGGCAATAGTTGGGCATACGTGCAGGTAACTTCACAAGTAAACAA TTAATTGGTAACCTTCATGTACAAGAGTCTTTTCCAGCCAAAGTTATGGTATATGGTTGAGAATTGTTAGTCTTCAAGTA GTGTTAAAATTGAGGCTTTCTTCTTATAGCTTGTTTGGATTAGCTTCTATTTTCTTAGAATCATATCTGAAACTTCAGAA GCTACTTCAGGAAGCTTTTCCCATAATTGAATTTGGCTTTAGAATCAATTGTAGAAGGATTTTCAAATACGCACTAGCTT ATTATCAACATATATCCATGGATTTTAGAATTCTGAACAATGAAATTTTCTTTTAATACTTTTTATTAGTTAGTTGTCTT GCACAAAAAATCATCTATAAGCCTAAAATTTTTATTTTGGTTTTTATGCTTGTAAGGTTCTTTCATCATATGGTCCCTAC TGGCTTTTAATTTATTGCCATCTCTCTTGTACTAATGTTTCCAGAGCAATCACAATCTAAAAGCTTGTGCTATCTCAAAG TGGTCCTTCCTCCAACTTTATTTTCACTTTATAATAGTACAATTGAGTCAAGAGTGAAAATTAATTATGGAGAGAAGCTT TTGTAAATAGATTTTGAGTACCAATTGTTTAACTGAATTAACTTCTTATCTTAATTCATCTTAACAGATAGCAGCTTATG GAAGAGGTTTTGTAATGGCATCGCAAGAGACTTGGGCCCTATTTGAGAAGGAAGACATGGTGGCAGTTGTAGACTCCGAT ATAACCAGTTCAATTTGCTTCCTCACAGGAGTTTGCAGTGGCTCAATGTGTGTCATTGTTGTGGCTGCTTGGACTCACAC AGTGCACAAAAGTTTCACAGCCACCCTTTCCCTTCTCACATTCTTCATTGGATACCTTTTGGTTGGTACTCCTTATTTGA CCACTTTATCATTTTCTATTGTTAGTTTCACAATGAATTATTAGCATGTGATGAAATGATTAACTTGTTGTTGACTTTGC AGACTAGGATTGCCATGGCAGTGCCTCATGCTTGTGTGAGTTGTTACTATGTGTGCTATGCTGAGAATCCAGAGAACAGG TTGTTTGATAAAACAATTAAAGATCGCCAAGCCTTGTTAGAAACTCGCCGTGAAATGGTTGTGCCAACACCAAGGGGAGT TAGGAGGTATACAAAGACTTAGGCGATGATTGGATACCATTTTAGTGCAATATCAATGGACTTTCATCTCACTTTATATC TCGAAGTGGGTGAATATTGACGTTCGTCGGCACTGGAGCCAACGGGTATCCAAAGATAGCCTAGTGTAATTTGCTTTTAC CATGTGAGAATTCATGTTAATGGTGGCTTTAAGATATGACATAGCCTTTGGTAGGATGCACCCACTTGTGGGGTGGGTAG GGCATTACCATGACGAAAGGGGTTGAATTGAAGTCCTTAGAAAAATCCATGACGGCTAAGGAATTGTTGAGAATGATCTG GCTTAAACAGATTTTTGTATTGGGATAGAAGGAACGTTGAGTAAAATGAGACTAATCAACAAGGCCACTAAAGAAAGTGA CCTTGTGGTCCCGTCCTTGTAATATTATGTATATTTTTTTGCATATATACTTTTAGGATATTCCAAATGGTAAAGTCCCA TCATTATTTTATTGTAAGAGGTGCGTAGAAGCCACTAACTTTTATTTATTTATTCTTGGGGTTCTTTATCAATCTCCATG TGTTCTTTTAAAGGGGAAAAGAATATGGTGATTGCATGCTATTCCAATGATATTTTGTCCAATCTGGTGTGGCTACCCCA ATGTAAAAGCTATTGTTTTATTGAAATAATAATATGAAATTTTGA
CDS sequence (LotjaGi3g1v0118600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCCGCAGAACCTGCTGTGGTGGCTGAGAGAGAGCATGAAACTGAAGATGGAGAAGAAGAAGTGGGTGCGAGGAA GGAGGAAGAAGGTGTTAGGGACTTGGAGAAAGGGGAAGAAATGGGTGTTGGTGGAGAGAGCAATGATGGTGTTGCTCACA ATCACAATGATCATGAAGAGTTTAATCTCTCAAGGTTCAACAGGTTGAACCCCACTAACCCTTTGAGGATTGTCATTAAT AGTTCCACTAGAGCTGCAACTCCTTCTCCTGCTGCTGCTGCTCAATCTCAACGTTCTCACCCACGCTCTATTCCAATTCC AACCCAACAACCACAACCACAACCACAACAACATCATCAACATCAGCAGCAACCAGTGACCCTGAATTCCAGAAAATATA CCAATAGAATATCCTTGTTTCTGTTTGTTGTCCACATGTTTATAGCTATTGCTCTTGTGGGTTTTCTTGTATTCAAGGGG GTTCAAGGGCTTATACTAGAATCAGAATCTATGAAGAGGAAAAAGAAAAACATGTTAAAGTTTTTCCTTCCTCAAGTGGA AGCTGCTTCTTTCATGAGCATAATTCTTGCTTTTATTTGGCAACAAGCAATCAGAAAATGGCCCACGTTTATGGTCCATT TCATATTGTGGTTCACTTTTGTGATGTCTCTGGCTGCTGGGATTCTTCTAATTTGCTTCCAAAAGCCTCCCACAGATGGT GTTGGGGTTTGTTTCATTGCTTTTGCAATTGGCAATGGCTTATATGCTTGTTGGGCTAGTAACAGAATCAAGTTTTGTTG TAAGATCTTGAATTTATCACTTCAACCTTTATCCAAATTCCCTGATTTGAATAAACCCACTTATTACATGCTTGGGGCTG GATTCTTGTGGATATCACTATGGAGTTTAGCAGTGATTGGATCCTTGAATTTTTACTTTCCCCCTTTGGTAATCCTTGCA TTGGTGCTGAGTTTGGCTTGGACTACAGAGGTTATGAGGAATGTTGTTAATATCACTGTTAGTAGGGTTATTGCCTTGTA TTATCTGAGGGGAATGCAATCTAGCACCCAATTTTGTTTTCTGAGAGCGTTGACCCGGAATCTTGGAAGTGCTTGTTTGG GGTCTCTCTTTGTGCCTGCAATTGAAGCCCTGAGAGTTGTTGCACGGGCGCTGAATTTGCTTGAGGGAGAAGATGAGTTC ATGTTTTGTTGTGCTCGTTGTTGTTTGGGAGTCATGGAATCCATTTTCAGAAATGGCAATAGTTGGGCATACGTGCAGAT AGCAGCTTATGGAAGAGGTTTTGTAATGGCATCGCAAGAGACTTGGGCCCTATTTGAGAAGGAAGACATGGTGGCAGTTG TAGACTCCGATATAACCAGTTCAATTTGCTTCCTCACAGGAGTTTGCAGTGGCTCAATGTGTGTCATTGTTGTGGCTGCT TGGACTCACACAGTGCACAAAAGTTTCACAGCCACCCTTTCCCTTCTCACATTCTTCATTGGATACCTTTTGACTAGGAT TGCCATGGCAGTGCCTCATGCTTGTGTGAGTTGTTACTATGTGTGCTATGCTGAGAATCCAGAGAACAGGTTGTTTGATA AAACAATTAAAGATCGCCAAGCCTTGTTAGAAACTCGCCGTGAAATGGTTGTGCCAACACCAAGGGGAGTTAGGAGGTAT ACAAAGACTTAG
Protein sequence (LotjaGi3g1v0118600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAAEPAVVAEREHETEDGEEEVGARKEEEGVRDLEKGEEMGVGGESNDGVAHNHNDHEEFNLSRFNRLNPTNPLRIVIN SSTRAATPSPAAAAQSQRSHPRSIPIPTQQPQPQPQQHHQHQQQPVTLNSRKYTNRISLFLFVVHMFIAIALVGFLVFKG VQGLILESESMKRKKKNMLKFFLPQVEAASFMSIILAFIWQQAIRKWPTFMVHFILWFTFVMSLAAGILLICFQKPPTDG VGVCFIAFAIGNGLYACWASNRIKFCCKILNLSLQPLSKFPDLNKPTYYMLGAGFLWISLWSLAVIGSLNFYFPPLVILA LVLSLAWTTEVMRNVVNITVSRVIALYYLRGMQSSTQFCFLRALTRNLGSACLGSLFVPAIEALRVVARALNLLEGEDEF MFCCARCCLGVMESIFRNGNSWAYVQIAAYGRGFVMASQETWALFEKEDMVAVVDSDITSSICFLTGVCSGSMCVIVVAA WTHTVHKSFTATLSLLTFFIGYLLTRIAMAVPHACVSCYYVCYAENPENRLFDKTIKDRQALLETRREMVVPTPRGVRRY TKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 43 | 43 | - | – | |
| MobiDBLite | 1 | 56 | 56 | - | – | |
| Phobius | 1 | 138 | 138 | - | – | |
| MobiDBLite | 83 | 126 | 44 | - | – | |
| MobiDBLite | 83 | 105 | 23 | - | – | |
| PANTHER | 105 | 542 | 438 | 5.1E-206 | ||
| PANTHER | 105 | 542 | 438 | 5.1E-206 | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 139 | 161 | 23 | - | – | |
| Phobius | 162 | 180 | 19 | - | – | |
| Phobius | 181 | 200 | 20 | - | – | |
| TMHMM | 181 | 200 | 20 | - | – | |
| Phobius | 201 | 211 | 11 | - | – | |
| Phobius | 212 | 234 | 23 | - | – | |
| TMHMM | 212 | 234 | 23 | - | – | |
| Phobius | 235 | 239 | 5 | - | – | |
| TMHMM | 238 | 260 | 23 | - | – | |
| Phobius | 240 | 258 | 19 | - | – | |
| Pfam | 244 | 528 | 285 | 4.1E-45 | ||
| Phobius | 259 | 287 | 29 | - | – | |
| Phobius | 288 | 306 | 19 | - | – | |
| TMHMM | 288 | 307 | 20 | - | – | |
| Phobius | 307 | 311 | 5 | - | – | |
| TMHMM | 311 | 328 | 18 | - | – | |
| Phobius | 312 | 332 | 21 | - | – | |
| Phobius | 333 | 461 | 129 | - | – | |
| TMHMM | 460 | 482 | 23 | - | – | |
| Phobius | 462 | 482 | 21 | - | – | |
| Phobius | 483 | 487 | 5 | - | – | |
| Phobius | 488 | 505 | 18 | - | – | |
| TMHMM | 502 | 524 | 23 | - | – | |
| Phobius | 506 | 563 | 58 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0118600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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