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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0118600 |
| Transcript ID | LotjaGi3g1v0118600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plasma-membrane choline transporter family protein; TAIR: AT5G13760.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|A0A0S3SJG3|A0A0S3SJG3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0118600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14522913..14525543) extracted from Lotus japonicus Gifu genome v1.2.
GTGGCTGAGAGAGAGCATGAAACTGAAGATGGAGAAGAAGAAGTGGGTGCGAGGAAGGAGGAAGAAGGTGTTAGGGACTT GGAGAAAGGGGAAGAAATGGGTGTTGGTGGAGAGAGCAATGATGGTGTTGCTCACAATCACAATGATCATGAAGAGTTTA ATCTCTCAAGGTTCAACAGGTTGAACCCCACTAACCCTTTGAGGATTGTCATTAATAGTTCCACTAGAGCTGCAACTCCT TCTCCTGCTGCTGCTGCTCAATCTCAACGTTCTCACCCACGCTCTATTCCAATTCCAACCCAACAACCACAACCACAACC ACAACAACATCATCAAGTATGTTCTGTTTTTTTTTTTCTTATTTTGGATTTTTTACTATGTTTCATTTGTGAAGAAATGG CTTGTTCAATGGAGAAATTTACATTTTTTATCTTGTTGTTAAAGATGATTTTATAAAGGGGTTCCCTGATTCTTACCAAG TACTTGTGTTATTGTTATTTTTATTTACTTTTTTACTTTTTTAGTTTGATGGATTATGTTTTCTTTTTCAGCATCAGCAG CAACCAGTGACCCTGAATTCCAGAAAATATACCAATAGAATATCCTTGTTTCTGTTTGTTGTCCACATGTTTATAGCTAT TGCTCTTGTGGGTTTTCTTGTATTCAAGGGGGTTCAAGGGCTTATACTAGAATCAGAATCTATGAAGAGGAAAAAGAAAA ACATGTTAAAGTTTTTCCTTCCTCAAGTGGAAGCTGCTTCTTTCATGAGCATAATTCTTGCTTTTATTTGGCAACAAGCA ATCAGAAAATGGCCCACGTTTATGGTCCATTTCATATTGTGGTTCACTTTTGTGATGTCTCTGGCTGCTGGGATTCTTCT AATTTGCTTCCAAAAGCCTCCCACAGATGGTGTTGGGGTTTGTTTCATTGCTTTTGCAATTGGCAATGGCTTATATGCTT GTTGGGCTAGTAACAGAATCAAGTTTTGTTGTAAGATCTTGAATTTATCACTTCAACCTTTATCCAAATTCCCTGATTTG AATAAACCCACTTATTACATGCTTGGGGCTGGATTCTTGTGGATATCACTATGGAGTTTAGCAGTGATTGGATCCTTGAA TTTTTACTTTCCCCCTTTGGTAATCCTTGCATTGGTGCTGAGTTTGGCTTGGACTACAGAGGTTATGAGGAATGTTGTTA ATATCACTGTTAGTAGGGTTATTGCCTTGTATTATCTGAGGGGAATGCAATCTAGCACCCAATTTTGTTTTCTGAGAGCG TTGACCCGGAATCTTGGAAGTGCTTGTTTGGGGTCTCTCTTTGTGCCTGCAATTGAAGCCCTGAGAGTTGTTGCACGGGC GCTGAATTTGCTTGAGGGAGAAGATGAGTTCATGTTTTGTTGTGCTCGTTGTTGTTTGGGAGTCATGGAATCCATTTTCA GAAATGGCAATAGTTGGGCATACGTGCAGGTAACTTCACAAGTAAACAATTAATTGGTAACCTTCATGTACAAGAGTCTT TTCCAGCCAAAGTTATGGTATATGGTTGAGAATTGTTAGTCTTCAAGTAGTGTTAAAATTGAGGCTTTCTTCTTATAGCT TGTTTGGATTAGCTTCTATTTTCTTAGAATCATATCTGAAACTTCAGAAGCTACTTCAGGAAGCTTTTCCCATAATTGAA TTTGGCTTTAGAATCAATTGTAGAAGGATTTTCAAATACGCACTAGCTTATTATCAACATATATCCATGGATTTTAGAAT TCTGAACAATGAAATTTTCTTTTAATACTTTTTATTAGTTAGTTGTCTTGCACAAAAAATCATCTATAAGCCTAAAATTT TTATTTTGGTTTTTATGCTTGTAAGGTTCTTTCATCATATGGTCCCTACTGGCTTTTAATTTATTGCCATCTCTCTTGTA CTAATGTTTCCAGAGCAATCACAATCTAAAAGCTTGTGCTATCTCAAAGTGGTCCTTCCTCCAACTTTATTTTCACTTTA TAATAGTACAATTGAGTCAAGAGTGAAAATTAATTATGGAGAGAAGCTTTTGTAAATAGATTTTGAGTACCAATTGTTTA ACTGAATTAACTTCTTATCTTAATTCATCTTAACAGATAGCAGCTTATGGAAGAGGTTTTGTAATGGCATCGCAAGAGAC TTGGGCCCTATTTGAGAAGGAAGACATGGTGGCAGTTGTAGACTCCGATATAACCAGTTCAATTTGCTTCCTCACAGGAG TTTGCAGTGGCTCAATGTGTGTCATTGTTGTGGCTGCTTGGACTCACACAGTGCACAAAAGTTTCACAGCCACCCTTTCC CTTCTCACATTCTTCATTGGATACCTTTTGGTTGGTACTCCTTATTTGACCACTTTATCATTTTCTATTGTTAGTTTCAC AATGAATTATTAGCATGTGATGAAATGATTAACTTGTTGTTGACTTTGCAGACTAGGATTGCCATGGCAGTGCCTCATGC TTGTGTGAGTTGTTACTATGTGTGCTATGCTGAGAATCCAGAGAACAGGTTGTTTGATAAAACAATTAAAGATCGCCAAG CCTTGTTAGAAACTCGCCGTGAAATGGTTGTGCCAACACCAAGGGGAGTTAGGAGGTATACAAAGACTTAG
CDS sequence (LotjaGi3g1v0118600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTTGGTGGAGAGAGCAATGATGGTGTTGCTCACAATCACAATGATCATGAAGAGTTTAATCTCTCAAGGTTCAA CAGGTTGAACCCCACTAACCCTTTGAGGATTGTCATTAATAGTTCCACTAGAGCTGCAACTCCTTCTCCTGCTGCTGCTG CTCAATCTCAACGTTCTCACCCACGCTCTATTCCAATTCCAACCCAACAACCACAACCACAACATCAGCAGCAACCAGTG ACCCTGAATTCCAGAAAATATACCAATAGAATATCCTTGTTTCTGTTTGTTGTCCACATGTTTATAGCTATTGCTCTTGT GGGTTTTCTTGTATTCAAGGGGGTTCAAGGGCTTATACTAGAATCAGAATCTATGAAGAGGAAAAAGAAAAACATGTTAA AGTTTTTCCTTCCTCAAGTGGAAGCTGCTTCTTTCATGAGCATAATTCTTGCTTTTATTTGGCAACAAGCAATCAGAAAA TGGCCCACGTTTATGGTCCATTTCATATTGTGGTTCACTTTTGTGATGTCTCTGGCTGCTGGGATTCTTCTAATTTGCTT CCAAAAGCCTCCCACAGATGGTGTTGGGGTTTGTTTCATTGCTTTTGCAATTGGCAATGGCTTATATGCTTGTTGGGCTA GTAACAGAATCAAGTTTTGTTGTAAGATCTTGAATTTATCACTTCAACCTTTATCCAAATTCCCTGATTTGAATAAACCC ACTTATTACATGCTTGGGGCTGGATTCTTGTGGATATCACTATGGAGTTTAGCAGTGATTGGATCCTTGAATTTTTACTT TCCCCCTTTGGTAATCCTTGCATTGGTGCTGAGTTTGGCTTGGACTACAGAGGTTATGAGGAATGTTGTTAATATCACTG TTAGTAGGGTTATTGCCTTGTATTATCTGAGGGGAATGCAATCTAGCACCCAATTTTGTTTTCTGAGAGCGTTGACCCGG AATCTTGGAAGTGCTTGTTTGGGGTCTCTCTTTGTGCCTGCAATTGAAGCCCTGAGAGTTGTTGCACGGGCGCTGAATTT GCTTGAGGGAGAAGATGAGTTCATGTTTTGTTGTGCTCGTTGTTGTTTGGGAGTCATGGAATCCATTTTCAGAAATGGCA ATAGTTGGGCATACGTGCAGATAGCAGCTTATGGAAGAGGTTTTGTAATGGCATCGCAAGAGACTTGGGCCCTATTTGAG AAGGAAGACATGGTGGCAGTTGTAGACTCCGATATAACCAGTTCAATTTGCTTCCTCACAGGAGTTTGCAGTGGCTCAAT GTGTGTCATTGTTGTGGCTGCTTGGACTCACACAGTGCACAAAAGTTTCACAGCCACCCTTTCCCTTCTCACATTCTTCA TTGGATACCTTTTGACTAGGATTGCCATGGCAGTGCCTCATGCTTGTGTGAGTTGTTACTATGTGTGCTATGCTGAGAAT CCAGAGAACAGGTTGTTTGATAAAACAATTAAAGATCGCCAAGCCTTGTTAGAAACTCGCCGTGAAATGGTTGTGCCAAC ACCAAGGGGAGTTAGGAGGTATACAAAGACTTAG
Protein sequence (LotjaGi3g1v0118600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVGGESNDGVAHNHNDHEEFNLSRFNRLNPTNPLRIVINSSTRAATPSPAAAAQSQRSHPRSIPIPTQQPQPQHQQQPV TLNSRKYTNRISLFLFVVHMFIAIALVGFLVFKGVQGLILESESMKRKKKNMLKFFLPQVEAASFMSIILAFIWQQAIRK WPTFMVHFILWFTFVMSLAAGILLICFQKPPTDGVGVCFIAFAIGNGLYACWASNRIKFCCKILNLSLQPLSKFPDLNKP TYYMLGAGFLWISLWSLAVIGSLNFYFPPLVILALVLSLAWTTEVMRNVVNITVSRVIALYYLRGMQSSTQFCFLRALTR NLGSACLGSLFVPAIEALRVVARALNLLEGEDEFMFCCARCCLGVMESIFRNGNSWAYVQIAAYGRGFVMASQETWALFE KEDMVAVVDSDITSSICFLTGVCSGSMCVIVVAAWTHTVHKSFTATLSLLTFFIGYLLTRIAMAVPHACVSCYYVCYAEN PENRLFDKTIKDRQALLETRREMVVPTPRGVRRYTKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 92 | 92 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| MobiDBLite | 44 | 80 | 37 | - | – | |
| PANTHER | 66 | 496 | 431 | 2.5E-202 | ||
| PANTHER | 66 | 496 | 431 | 2.5E-202 | – | |
| TMHMM | 90 | 112 | 23 | - | – | |
| Phobius | 93 | 115 | 23 | - | – | |
| Phobius | 116 | 134 | 19 | - | – | |
| TMHMM | 133 | 155 | 23 | - | – | |
| Phobius | 135 | 154 | 20 | - | – | |
| Phobius | 155 | 165 | 11 | - | – | |
| TMHMM | 165 | 187 | 23 | - | – | |
| Phobius | 166 | 188 | 23 | - | – | |
| Phobius | 189 | 193 | 5 | - | – | |
| TMHMM | 194 | 213 | 20 | - | – | |
| Phobius | 194 | 212 | 19 | - | – | |
| Pfam | 198 | 482 | 285 | 3.3E-45 | ||
| Phobius | 213 | 241 | 29 | - | – | |
| Phobius | 242 | 260 | 19 | - | – | |
| TMHMM | 247 | 281 | 35 | - | – | |
| Phobius | 261 | 265 | 5 | - | – | |
| Phobius | 266 | 286 | 21 | - | – | |
| Phobius | 287 | 415 | 129 | - | – | |
| TMHMM | 414 | 436 | 23 | - | – | |
| Phobius | 416 | 436 | 21 | - | – | |
| Phobius | 437 | 441 | 5 | - | – | |
| Phobius | 442 | 459 | 18 | - | – | |
| TMHMM | 456 | 478 | 23 | - | – | |
| Phobius | 460 | 517 | 58 | - | – | |
| Coils | 511 | 517 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0118600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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