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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0119800 |
| Transcript ID | LotjaGi3g1v0119800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase sigma factor; TAIR: AT5G13730.1 sigma factor 4; Swiss-Prot: sp|Q9ZSL6|SIGD_ARATH RNA polymerase sigma factor sigD, chloroplastic; TrEMBL-Plants: tr|G7J0X0|G7J0X0_MEDTR RNA polymerase sigma factor; Found in the gene: LotjaGi3g1v0119800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14660247..14664319) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTAAACTGCAGAATTGTATCAATGACATCCACAAATATTCCTCTCACCTTTTATCCTGTCCCACACCACTTAGCACA AAAAAGATACTTCCTCACCTTCCTGTGTCAGTGAGCTCAGAAATAATATCTGCATATTGTTCATTTTTATGGGCCAAAGT AGAAGAAGCAATATCCAAACATTCTTCTTTTATGGCCATAGCTAGACTATGCTCATCCCCAAGCCACTCCCCTACAATGT CTCTCACATCACTTCCAACCTTTCCAACCCTCAAGACACACCACTCTCATCAACCCAGTAATTTACCATCCAAGTTTTGT ACAAGTTTGGTTTCTAGTGATGCATCAGCAACAGAAGCAGTGGCACTGGCCAATGCTGCTGTGGAGGCAGCTAGAGAGGC TGTGTCTGCAGCTGCTGAACTTGGGAAAGAGTGGCATCTTAGAGAGAGTGATGATGTTATGAGTGTAGGAATTGACACGA GGAGGAAGAGAAGGAGGAAAAAGAGAAAAAGTTTGGGATGCATGGAAGAAGAGAATCAGAACATCTGCTTAAGGCAGAGT CCATCTGTGAAGTCTGGAACATCTGGTTTTTTGAGTTCAAAAGAAGAAGCTGAACTTTGTTTATCTCTCAAGGTATGTAA TATATGAGTTTTCTGTGATTCATTGAGCAGAAATACCACATGCTAAGCAATATAGTTTATTGCATAATTTTTTGTTCTGT CAATAAAGTTAGTTATCTTCTAAACAAATATTTGCATATTTGGAAATTCTTCAGCAATTAATTTTGAAGCCATAGTCAAT TCTAGGGAGAAGCTTATGTGAATAGCTTCTTGGTACTACAATTGATGCTGAGAAAAAAATAAGCTGATCCAATCTTTTCA TGTATCATTTCATATTAGGACAAAATTTACCTACTATTCCATAGGCACGGTTTGTGCTGTGGCCCAACAAAAAATTCAAC CACTCATTTTCTTAATATTTATGGCTGTGCTGATTTCCTTCAGCTTCCCAATTTTCAACTCATTGTCATGTTGTAATTGA GCTTATTAAAAACAGATGTACCAAACTGTATCAAGTCTTCTCCTTTTCTTTTATTACATGTTTCTTGGAAACATATAAAA TCAAGTATTTACCACAATGCAAATTTTTTGGTTGCCTATGGGTTGGATTTTATTACAAAAGGGATGATGTATGTATTACA TAATTTATAACAGGAGGGGGCAAGGATTGAAGTTGCTAACCTGAGAATCACAGAACATGAAGGCAATCCTGCAATTCCAA AGAGGTTTTCTCATGGTAATACAAATCTGAACAAGGTGTTGAGTAATACAAGAGATTTAAGAGCAAAATTAGCTCGTGAT TATCGAGCATTAGTTGCCTCCATTGCAATTGGTTATCAAGGGAATGGACTAACCCTTCAAGACCTCATTCAGGTGCATAC ACATTTTAGTGTTTTACATTGTTACAGTTCATTCTTAATTTCTTATGCATTTTAATTCATTTTACCAGGAAGGAACCATT GGACTTCTTCGAGGAGCAGAGAAATTTGACCCAAATAGAGGATGTAAGCTGTCCACTTATGTTTACTGGTGGATTAAGCA AGCCATCATTAAAGCTGTGACCAAGAAGTCTAGATTAATCAGATTACCGGTGAGGCACTGCTTCAATCAACACTTTATTT CTAGTTTGCTGCAAATGCAATGGATGACTTTTAGCTCAACTCACATATGTGGTTTTAGTTAGCTTCCATACAAACATATA TATCCAGTTTGATATTAGGTTGTGTGCGTTTGACTAAACAGCTTCGTTAAGCGCTTATGGCAATAAGCATTTGTCACATA AGCTCTTATTCATAAGCTAATTTGAAAAGCTTATAAAAATAAGCTCAAAAGTAGGTTAAAGCTAAGTGTATAAGCTAATT TAGCTTATAAAAATAAGTTCAAAACAGCTTATAGGTAGGTCATGAACTAAACATAAAATTTCCCAAACACTCCTATAAGC ATTTATGCTATAAGATAAACTGAAATAAGTTATGAACGGCTTCTACTTGCCTTGAGTGTTAACTTCTTTGTACTTGGTAG GTTCTTTTAAGTTTGAAGTTCTCACACTGCAATCCAAATTTCTGATGTTTTCTTTTATAAGGTTGAAATAGACCAAACCA TATCTAAATAATTTTATAAATTAAGTTGAAATACAAGATATATTCATCTCTTTCTATTTCTACTATTTACATATTCATTC TGGACTTATTTATTATTGGAAGTGTTTACATTCAGTAACTACTTTACCAAGCATTTACTTCTTGGTAGTTTCTTAGGTTT TTAAAGCAGCTCTTGGCAACTGCTTAGCAATAGTAACATGATTAGAAAAGATAGTCGGATACAAGACTAAAGAAGTTGGC AAGTAATTATCAATGCTTGGTTAGTTTCTCATTTACAGGGAGCCAAGGGTGCGATGGTTGCAAAAGTTGCGGAGGCGAAT AGTGTCTTGAGAAGAACACTGAAGCGGAGGCCGACATACCATGAAATGGCAGAGATGCTCAATGAGAATGTTTCCACTGT AAGACTTGTTTCTGAAAAGAGCAGGCCACCAATTTCAATAGACAAAGCTGTAACTGACTATGGCAACTTGACTCTTCAGG TTTGATAACTTCATTGTTATGTTACATGTATAACTACCCATTTGATTCACCAAAGAAAAGGATCATATTAGGATCTGTTA TCATATTAGCATAAGCTTCAAAAAACTTTTGTATGCTCTCCCATTTATCTCCTTGAGCTTCCAATTTATATTCATTGTGA GTAAATAGGGCGTTACTAGACTATTAAAACTCACATTTAAGTGCTATTCGAGAAGGAAGCTTTGTTGTGACAAGATGGAG GTTCAGAACAAGAGAGACATTTTGGTAAACAGCTTAATTAAGCACTTATGACAATAAGTGTTTATCGCATAAGTACTTAT TCATAAGCTGATTTGAGAAACTTATTGAAATAAGCTAACCAAAATATCTTATAAGTAGGCATAAACACTTAGTCATAAGC TAATCTGAGTAGCATATAAAAATAAACTCAAAACAACTTATCGGTAGGATATGAGCTATTTACATAATCTCTCTCAAACA CATGCATAAACATTTATGCTATAAGATGAACTCAGATAAGTTTTTCCAAGCAAGGCCAGGGAAGGGGTTACTTAATGAAA CTATAATGAATTTAGTTGCTTGCATCTTTAAATTTCTAGTAACAATGGATGTCCTCCATAATTTTATTTTGGACTTAATC CCTTGGTGTTTATGAAACTGCAAACTACACTAATGGGTGGTTTATTCATCTGGTACGTACTTGATTTCCTCTTAAGCAAG GTGTGTCAGGTTTGAGTCTTGCATATGAAAAAAAAACTGTTGGGAGAGCTAGTCCCAGCAGGAAATAGATGTTCACGGCT CGAACATGATTGACTTATGTGGAAGATACGTGTATAGATAAAAAAAATGGAACTACAAACTACTAATGGTTTAAGCTTGA TTTAGTTAGATCTTTTTAACTTGTCCAGAAAAATTCTGAACTATTAGTCATACTGTTCAATTTAATGCAGGATATACTGC CGGGGCCAGTTGAAATGATTCCAGAAAAGATGGTTGAGAGGCAGCTAGTGAAGCAGGGAGTGGTGAAGCTTCTTAACACA CTTAACAAGAGGGAAGCAGAGATAGTAAGTTTATACTTTGGACTGAATGGATACACCCCTCGCTCTTTTGAGGAAATAGG AAAGTTGTTGAAACTATCAAGGGAGAGAGTCAGACAAATTCATGGCGTTGCACTGTCAAAGTTGCAGCAGACCGCCCTTG TAGATAGTCTGAAGTTCTATGTTGTATAGAAGAATGTTTTGTTGATTAAGATTAATGAAAGCAAAAAGAAAAGAAAGTCA AGGATATATATTATGAGGATGTGCTAAACAAAGAGTTGAAAGATGTCAAGGCAGAGTTTTTGGCTATTGCATTTTCACTT GTGGAACCAAAAGAAATTAATACTTCTTGAAGTTGAATTTTCGCAAGAAGAAAAAATTAGCCTTAAGAATTTG
CDS sequence (LotjaGi3g1v0119800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATAGCTAGACTATGCTCATCCCCAAGCCACTCCCCTACAATGTCTCTCACATCACTTCCAACCTTTCCAACCCT CAAGACACACCACTCTCATCAACCCAGTAATTTACCATCCAAGTTTTGTACAAGTTTGGTTTCTAGTGATGCATCAGCAA CAGAAGCAGTGGCACTGGCCAATGCTGCTGTGGAGGCAGCTAGAGAGGCTGTGTCTGCAGCTGCTGAACTTGGGAAAGAG TGGCATCTTAGAGAGAGTGATGATGTTATGAGTGTAGGAATTGACACGAGGAGGAAGAGAAGGAGGAAAAAGAGAAAAAG TTTGGGATGCATGGAAGAAGAGAATCAGAACATCTGCTTAAGGCAGAGTCCATCTGTGAAGTCTGGAACATCTGGTTTTT TGAGTTCAAAAGAAGAAGCTGAACTTTGTTTATCTCTCAAGGAGGGGGCAAGGATTGAAGTTGCTAACCTGAGAATCACA GAACATGAAGGCAATCCTGCAATTCCAAAGAGGTTTTCTCATGGTAATACAAATCTGAACAAGGTGTTGAGTAATACAAG AGATTTAAGAGCAAAATTAGCTCGTGATTATCGAGCATTAGTTGCCTCCATTGCAATTGGTTATCAAGGGAATGGACTAA CCCTTCAAGACCTCATTCAGGAAGGAACCATTGGACTTCTTCGAGGAGCAGAGAAATTTGACCCAAATAGAGGATGTAAG CTGTCCACTTATGTTTACTGGTGGATTAAGCAAGCCATCATTAAAGCTGTGACCAAGAAGTCTAGATTAATCAGATTACC GGGAGCCAAGGGTGCGATGGTTGCAAAAGTTGCGGAGGCGAATAGTGTCTTGAGAAGAACACTGAAGCGGAGGCCGACAT ACCATGAAATGGCAGAGATGCTCAATGAGAATGTTTCCACTGTAAGACTTGTTTCTGAAAAGAGCAGGCCACCAATTTCA ATAGACAAAGCTGTAACTGACTATGGCAACTTGACTCTTCAGGATATACTGCCGGGGCCAGTTGAAATGATTCCAGAAAA GATGGTTGAGAGGCAGCTAGTGAAGCAGGGAGTGGTGAAGCTTCTTAACACACTTAACAAGAGGGAAGCAGAGATAGTAA GTTTATACTTTGGACTGAATGGATACACCCCTCGCTCTTTTGAGGAAATAGGAAAGTTGTTGAAACTATCAAGGGAGAGA GTCAGACAAATTCATGGCGTTGCACTGTCAAAGTTGCAGCAGACCGCCCTTGTAGATAGTCTGAAGTTCTATGTTGTATA G
Protein sequence (LotjaGi3g1v0119800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIARLCSSPSHSPTMSLTSLPTFPTLKTHHSHQPSNLPSKFCTSLVSSDASATEAVALANAAVEAAREAVSAAAELGKE WHLRESDDVMSVGIDTRRKRRRKKRKSLGCMEEENQNICLRQSPSVKSGTSGFLSSKEEAELCLSLKEGARIEVANLRIT EHEGNPAIPKRFSHGNTNLNKVLSNTRDLRAKLARDYRALVASIAIGYQGNGLTLQDLIQEGTIGLLRGAEKFDPNRGCK LSTYVYWWIKQAIIKAVTKKSRLIRLPGAKGAMVAKVAEANSVLRRTLKRRPTYHEMAEMLNENVSTVRLVSEKSRPPIS IDKAVTDYGNLTLQDILPGPVEMIPEKMVERQLVKQGVVKLLNTLNKREAEIVSLYFGLNGYTPRSFEEIGKLLKLSRER VRQIHGVALSKLQQTALVDSLKFYVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 426 | 426 | 1.4E-161 | – | |
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| PANTHER | 1 | 426 | 426 | 1.4E-161 | – | |
| Gene3D | 94 | 265 | 172 | 1.8E-31 | – | |
| SUPERFAMILY | 117 | 259 | 143 | 3.66E-31 | ||
| TIGRFAM | 189 | 414 | 226 | 6.8E-27 | ||
| Pfam | 193 | 262 | 70 | 1.6E-19 | ||
| ProSitePatterns | 217 | 230 | 14 | - | ||
| PRINTS | 217 | 230 | 14 | 1.2E-19 | ||
| PRINTS | 241 | 249 | 9 | 1.2E-19 | ||
| Gene3D | 266 | 340 | 75 | 2.1E-7 | ||
| SUPERFAMILY | 274 | 338 | 65 | 1.02E-7 | ||
| Pfam | 276 | 345 | 70 | 1.3E-8 | ||
| SUPERFAMILY | 326 | 416 | 91 | 8.97E-20 | ||
| Gene3D | 348 | 425 | 78 | 6.9E-20 | ||
| CDD | 358 | 413 | 56 | 2.71168E-8 | – | |
| Pfam | 361 | 413 | 53 | 8.4E-15 | ||
| PRINTS | 365 | 377 | 13 | 1.2E-19 | ||
| ProSitePatterns | 386 | 412 | 27 | - | ||
| PRINTS | 386 | 401 | 16 | 1.2E-19 | ||
| PRINTS | 401 | 412 | 12 | 1.2E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0119800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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