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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0122400 |
| Transcript ID | LotjaGi3g1v0122400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT2G17030.1 F-box SKIP23-like protein (DUF295); Swiss-Prot: sp|Q3EBZ2|SKI23_ARATH F-box protein SKIP23; TrEMBL-Plants: tr|A0A072UW30|A0A072UW30_MEDTR F-box SKIP23-like protein; Found in the gene: LotjaGi3g1v0122400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14969192..14972185) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTACTTTTTCCATTTCTTTCTATCTTTCTCCTCCTCCACCTCATTCCACCTAAAAAATGAGGTGTCAACAAATAATT ATTCAATTCCGCTAGTAGAATAGAAATTAGAGTTTAATGGTTGTGGGTACTTTTCTTTTTAGAGAAAAACAAAATAGCCA AAGAAAGCTTGCTAGAGAAGATGGCTTACTAGAGAAGATTCGAAAACTATATAACTATTCAGTGACACTCACGGCGCTGC TCAACTCAACCATGGCGGCAGCACCAGACTGGTCTCAACTGCCGGCGGAGCTCCTCCATCTAATTTTAGAATGCCTCGAC GACACCCCACTCGACCGCCTCCGCTTCCGATCCGTCTGCTCCACATGGCGCTCTTCCATTTCCCCCTTCATCCCCATCCA CCAATTCCCCTTCAATTTCCCACCCATCCCTGCCGCTTCCCTCTCCGCACGCAGCATCTTCCTCATCAAACCACCACCAC ACCTACAAACCCAAACACCATGGTTGGTCAAAATCGGCCAAGACGAATGTGGCCGGAACCGCCTCTGGCACCCTCTCTTT CGTGACCGGTCCATTTCTACCTCCTCCCCTGGCGTGCTCGACCTCACCAACCTCCTCGTCTCCGACCTTGGAAACGAGTT CGTCGTCGCCCACCCCTCTACCAAGGGAAAGGTGGTGGCGGCTGCGGCTGCCACATTGCAGGGTTCCATGCTGCTCACGA TTCATGAATCCGAGAAGCTGGCCGTCTTCGGCTATGGTGACGGTGACGACGAGCGCTGGACAATCATGCCGGCGCCGGAC ATGTCCACGAACTACCATGATGTATCCGCCTTTAACGGCAGGCTCTACGCGGTGGAAAGCGGTGGTCGGACGGTCGTGGT TGGGCCGGACTCAGTCCTGGAGGAGGAGCCGTTTGCTGAACACTATGGGCCCAACACCGGCTGCTGCTATAACGAGAAGT TCTTGGTGGAGAGCGAGGGCGAGCTCTTACTGGTGGAAAAACACGGGGGTTTTTGCGAAGATATCAAGTACAAGTACGAA GGTGATAATGATATTGATGAGTATAAAGAGGGGATGTTTAGAGTGTTTAGGTTTGGAGAGAATGAAGAGGATGAAGAAGA GAATGAGAGTTGGGTGCATGTGAGGAATGTAAGAGACCGGGTTCTGTTCATAGGGGATGATTGTGCCTTTTCTGTTTCTG CTTCGGATTTGGGTGTTGATGAAGGAAACTATGTTGTGTTTAGAGATGATGACCTGAAATCTGGTATTGGTGTTTTTCCC TTGGATGATGTAGGTTGGTATGGAGATGGGATTTTGCATCTGTTGGATTATCCCGGTTTTTCCAGCTTGTTCCGGCCACC CCCGGATTGGGCAATGTTGCATTGACAGACAAGAGAGTATGTATGTATGCAGTATGTTACATCAAATGGTTTCTAATTTG AAGCTGTGTAGTTTTTCTGCAAATGTCTCCATTTACTGCTTTGCTCTTTTTTACATCTTTAGTTCAACTAAAAAAATGAT GTTACTTCATTCAGAATTTGGAAATCTACTTAGGTTTCATACTGTCAAGTGTCAACCACTTTGGATGAGTTTTCTGGATG CCGAGTATGTTATGCATTCTTGGAAATGGCAATTGTTGTTTGCTATTGTGCATTACTTTCTAGTCATATGGGTACAACTA CAAGTACAGTCTTTTATATTAATATTGCTGTTTTCTTTTTCTTCATTTTGCCTGAAAGATTGTAGACTATGTGCTGTTTG AGACTCATTGGGGATGTGGCCCTAATTTTCTTTCTTTCTTTTGTTTGGGGTGACTTCTCTAAATTACTGTATAATGTATC CTGGATAATCTAGGGTTAGAGAGTATAACACTTAATAAAATAGCTTTTGCAGCTAATGCTGGATCAGTTAGAAGAACTAA GTCGGGTAAGATGCTTCACTGGTTGCTGTTTTGGATTAGGGTACCCTTGACTAGCTGTCTCACATTGGCTAAATGAAGAT AATCTTCCCCTGTCCAGTGCTTGATTCTTCTCGTGGACCATGTGGACATTATTTATTAGCTTTGATAGTGTGATTGTCAG GTGTAGTTTAAATTCCACTTTGATTTCTTTGATCAATCCATTCATGAAAATACCCTTAAGATATTATGAATCTATACCTC GAATCCCCTGAGTTCGTTTGTTGTGACGGTCACTTTTTGCTCCAACTTAAGGGTTCTACATCATAAAGGGTTGAAACCTC CTGAATCTTGGTAATCACAATTCTGAATTCTGATTCCCTTGGAAGAGATTGGTTTACTGTACTGGGTTCCCACCATTGGA ACCTGCTCAAAGCGGCCACCATCACTTGTAGGCATCATCCCCCCAAACAGAGGGATTTCTAATCTTCTCCATTGATCCTT AAAGTGATCACTTTGATTCCCTCTAAAAGACTCACTTCCTCCTCCCTTTTCACCTGGAGGGTGCTCAACTTTGCGGGCCT GTGCATATGGTACACTTGATGTTCTCCTAAAGGTTTTAAATCTTCAAGGTGAGTTTATTGAAGTTCTCTCTGTGATTCTT GCATCACCTTTTCCCTTGCAGCTTGAACCTGTTCTGCCTGGATCTACCTACTGCATGATTTGAACTTTACTGTGAAGATT CTAGCCTGGCTTCAATTTTTATTGGGGTTTGCCATACATGTTGATAGAACTTGCTCAGAATATAGAAAGAAAAAGGTGTA TTATTGGCAGAAATTTTCTTTACTCCATGGTTGTACTAACAGTGAATAAGAAGTTGAAATACAGCAACCAATTTCCTTTC CAATTATCTATATCCTATCATCTTTCACTTTCTAACTGTTCTAGCTACCTACTGATCTGGGGTTACTTAACATTGCAATC CAGAACCAACATTTGGCATTTACTTAACACTCTTGAATTCTATACTTGGCAGCTGAGGCCTATCAACAAATGAAGTATCA AACAACATGGTAACTGTATCTCAAATTTTGTCAC
CDS sequence (LotjaGi3g1v0122400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGTGGGTACTTTTCTTTTTAGAGAAAAACAAAATAGCCAAAGAAAGCTTGCTAGAGAAGATGGCTTACTAGAGAA GATTCGAAAACTATATAACTATTCAGTGACACTCACGGCGCTGCTCAACTCAACCATGGCGGCAGCACCAGACTGGTCTC AACTGCCGGCGGAGCTCCTCCATCTAATTTTAGAATGCCTCGACGACACCCCACTCGACCGCCTCCGCTTCCGATCCGTC TGCTCCACATGGCGCTCTTCCATTTCCCCCTTCATCCCCATCCACCAATTCCCCTTCAATTTCCCACCCATCCCTGCCGC TTCCCTCTCCGCACGCAGCATCTTCCTCATCAAACCACCACCACACCTACAAACCCAAACACCATGGTTGGTCAAAATCG GCCAAGACGAATGTGGCCGGAACCGCCTCTGGCACCCTCTCTTTCGTGACCGGTCCATTTCTACCTCCTCCCCTGGCGTG CTCGACCTCACCAACCTCCTCGTCTCCGACCTTGGAAACGAGTTCGTCGTCGCCCACCCCTCTACCAAGGGAAAGGTGGT GGCGGCTGCGGCTGCCACATTGCAGGGTTCCATGCTGCTCACGATTCATGAATCCGAGAAGCTGGCCGTCTTCGGCTATG GTGACGGTGACGACGAGCGCTGGACAATCATGCCGGCGCCGGACATGTCCACGAACTACCATGATGTATCCGCCTTTAAC GGCAGGCTCTACGCGGTGGAAAGCGGTGGTCGGACGGTCGTGGTTGGGCCGGACTCAGTCCTGGAGGAGGAGCCGTTTGC TGAACACTATGGGCCCAACACCGGCTGCTGCTATAACGAGAAGTTCTTGGTGGAGAGCGAGGGCGAGCTCTTACTGGTGG AAAAACACGGGGGTTTTTGCGAAGATATCAAGTACAAGTACGAAGGTGATAATGATATTGATGAGTATAAAGAGGGGATG TTTAGAGTGTTTAGGTTTGGAGAGAATGAAGAGGATGAAGAAGAGAATGAGAGTTGGGTGCATGTGAGGAATGTAAGAGA CCGGGTTCTGTTCATAGGGGATGATTGTGCCTTTTCTGTTTCTGCTTCGGATTTGGGTGTTGATGAAGGAAACTATGTTG TGTTTAGAGATGATGACCTGAAATCTGGTATTGGTGTTTTTCCCTTGGATGATGTAGGTTGGTATGGAGATGGGATTTTG CATCTGTTGGATTATCCCGGTTTTTCCAGCTTGTTCCGGCCACCCCCGGATTGGGCAATGTTGCATTGA
Protein sequence (LotjaGi3g1v0122400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVGTFLFREKQNSQRKLAREDGLLEKIRKLYNYSVTLTALLNSTMAAAPDWSQLPAELLHLILECLDDTPLDRLRFRSV CSTWRSSISPFIPIHQFPFNFPPIPAASLSARSIFLIKPPPHLQTQTPWLVKIGQDECGRNRLWHPLFRDRSISTSSPGV LDLTNLLVSDLGNEFVVAHPSTKGKVVAAAAATLQGSMLLTIHESEKLAVFGYGDGDDERWTIMPAPDMSTNYHDVSAFN GRLYAVESGGRTVVVGPDSVLEEEPFAEHYGPNTGCCYNEKFLVESEGELLLVEKHGGFCEDIKYKYEGDNDIDEYKEGM FRVFRFGENEEDEEENESWVHVRNVRDRVLFIGDDCAFSVSASDLGVDEGNYVVFRDDDLKSGIGVFPLDDVGWYGDGIL HLLDYPGFSSLFRPPPDWAMLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 47 | 89 | 43 | 4.58E-7 | ||
| PANTHER | 50 | 419 | 370 | 5.4E-88 | – | |
| PANTHER | 50 | 419 | 370 | 5.4E-88 | – | |
| Gene3D | 51 | 90 | 40 | 6.6E-7 | – | |
| Pfam | 51 | 88 | 38 | 2.0E-6 | ||
| SMART | 55 | 97 | 43 | 1.2E-4 | ||
| Pfam | 342 | 387 | 46 | 1.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0122400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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