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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0122600 |
| Transcript ID | LotjaGi3g1v0122600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger CCCH domain-containing protein; TAIR: AT2G41900.1 CCCH-type zinc finger protein with ARM repeat domain-containing protein; Swiss-Prot: sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30; TrEMBL-Plants: tr|I1MJP7|I1MJP7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0122600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:14998075..15002595) extracted from Lotus japonicus Gifu genome v1.2.
CCGACCCTCCCGGTTCCCCGCGTAACTTCATTTGGCGTGCATTTCAGTAGCATTTCACTGTCACTCTAAATTTGTGCCCT TAATTTCAATTTCATTTCAAAAGCGTTACTCTCTCTTTCTCTCTCACAGTTCCCTCTCTGTGAATGTGATGCTTCCTCCA TGAACTCTCTCCCCTTGTTCCCTCGGTTCTATCGATAGATGCAAATGGAAGCTCTCATCTTCTTCACCTGATCTCGTTTC CTGCTTCAGATTCTCGCCATTGATGAGGAATTTTTCATCTTCTTCCCGTTAATTTTTTCATCGGGTTTGGTTCGGAACTC GATCTTCACCGCATCCACCTCGTAATCGGTGAGTCTCCACTCTGCAATTCAGTTTCTTACACGATCTGTAACATTTTCAG CTCATAGCTTGATTCCTGATAATTTTTCGCTTTATCAGTGTTTTCTCAACTTCAAATTCATGAAACTTTTTAGTAGCATT CGTAATTAAAATGCAAACCTAACGATTTTTTTAATTACTGGATTTTACTTTGAATTTTTTGTTGTAGATTGTTGATATTT ACAAGAGTTGTTGTTTTTTTTGTTTTTCTTAGCTTCGTTGGGAATAAGAATCATTCGAAATTTTTGTCTTTTTTCATTTT TTAATATTTTGATTGACAAGGTTCTTATCTTTAATTATTCTATTTGATATGATTCTGGATTTAATTCTGTGTTTTTTCGT TGCGTAAGGGAACATGTTCTCGTGCCTGTGATTTTACTGGAATATTTGGTCGGGTTTTTTTTACATGGTTTAGTATTCTG CTATCCTAGGCAACTACATAGTGTGTGCTTGGCTTTCAGTTCACATGTGTTCCAAGACAGTTTCAACTTAAAAGCACGAA TTTCAATGTGCGAAAGTGAAAGTAATTCCTAGGTTCCGTTGGGTTCAAAGTTCTTTCGAGTTGATCTCAACTGAAATCCA AACACACCCATAGTTATTTTTTTTTTCAAAGTTCACCTTTTCTTGGGGTATGTGATTGTTATTGTTATCTTAATTTTGAT TGTCATGTGATTATTGTTGTTAAGGTTACTGCTTCTTTTCGGTTGTCTGTTGAAGCAATGTTTTTTTTTTTGCGCCTCTG GTGGTATGCTTGTCTTGTTATTTTATTTTATGAATCAACTCCCTTTTGCATGATTCTAGCTTAGTTGTAATCCCAATTGC ACTTGATTGTCTGTGAATGCTGTACGATGTTGTTTATGTTTTTTTATTTTTGAGTTCTCAGGCTTATCTATTCATTTTTG ATTTCATGGTCTCATGGGGCAATTGATATCCTTGTTGGCCCTGTTATTTTGTTGAAGCCTAAATAATTTTTTACTTGTGG CACTTATTAGAAAAATTCTACAGGTACTTATAGAGTGTAAAGATCTTCACGGAACCAATTGATTTTATATGCTGCAAGGA CCTAATTATAAAAAAAATTAAATGATAGTAATCTATTTGAATATTTTTAGAAGGTGTAGGTAGAACTAGTTACTTATTTA GCCTTTGTTAATCTATTGGAAAATTCCACGGCTAGTTGTATGTGGTTAATTTGCAACTGTGTTTCATCAATCTTCAATTT TTCTTAATAGTTCCCCCTTTGCTTTCTCCTTCTCGGGTTAATTTGACTTTTTTTTTTGTCGATTTCATTTTGATCACTTA TAAACTTATATGATTATTATTGTTCAGTTAATTGAAGCATGTACGGTGATTCAGAGATTTCAAAATCTGCTTCAACTTCA TCTGCGGTAGAAGGTTCAACTTACGTCAAAGACATGAAAAATCTAACTGTTCATACTGAAGATTCTTTTTCCACCTTACA TGAACTTGCTTCTAACAATGATTTTGAAAGTTTCAAGCTAGCTTTAGACAGGGATGCTTCTCTAATAAATGAAGTTGGCC CCTGGTATGTCCGTCAAAGTGGATCCAAACAAATTGTTCTTGAGCATAGAACTCCTTTAATGGTTGCTTCTTGCTATGGG AGTATTGATGTTTTAAAGCTTATACTCACATGTTCAGAGGCTGATGTAAATTTCTCCTGTGGGAATGATAAAAGCACTGC CCTTCACTGTGCCGCTTCAGGCGGTTCTGTTAATGCAGTTGATGTTATGAAGCTGCTTTTATCTGCTGGTGCTGATATCA ATTGTGTGGATGCTAATGGAAACCGTCCTGTTGATGTTATTGTTGTTCCTCCTAAGTTCCAAGGTATGAAAACAATTATT GAAGAACTTCTCTCAGATAGTGCTTCTGATGGGTCTGTTGATACCTGCTTTCTTCCAGTATATGTTAATTCATCAAGTCC TAGTTTAGCTGCCCATTTATCATCCCTTGAAAATGGGTTGCCATCCTCTCCTGTAGCTTTGAAGTTCAATGATGCAACTA TCAATTCTACATCTGAGAAAAAAGAATATCCAATTGATCCATCACTTCCTGATATAAAAAACAGCATATATGCCACAGAC GAGTTTCGCATGTTTTCATTCAAGGTTCGCCCTTGCTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCA TCCTGGAGAGAATGCCCGTAGGAGAGACCCCAGAAAGTTCCATTACAGCTGTGTGCCATGTCCTGAATTTAGAAAAGGGG CTTGTAGACGTGGGGATATGTGTGAATATGCCCATGGAGTATTTGAGTGCTGGCTACACCCTGCTCAGTATCGGACAAGA CTCTGCAAAGATGGCACTGATTGCAACAGAAGGGTATGTTTTTTTGCTCACACTACTGAAGAGCTGCGTCCATTGTATGT GTCCACTGGGTCTGCTGTACCTTCACCCCGATCTTCTGCCTCTGCTCCTAATGTCATGGACATGGCTGCTGCAATGAGCC TTCTTCCATGTTCACCGTCAGCGATTTCTTATGTGGCTCCATCCCCCTTTGCACAGCCAATATCTCCATCTGCCAATGGC ATGTCTCACTCATCTACTGCTTGGCCGCAGCCAAATGTGCCTGCGCTTCATTTACCAGGAAGCAATATTCAAACTAGCCG TTTGAGATCTTCTCTTAGTGCTCGCGACATGCCACCTGAAGACTTGAATTCGGTACCAGACTTCGATGGCCAGCGTCACC TGTTGAATGACTTGGGCTGTTTCTCCCAACCGTGTACTGGTTCCATTTCAATGAGCCGATCTGGTTGGTCTAAGACACTA ACTCCATCAAATCTTGATGATCTATTTTCAGCTGAAATTTCTTCGTCTCCTCGGTATTCTGACCCAGCAGCAGCTTCTGT ATTTTCCCCAACACATAGATCAGCAGTTCTCAATCAGTTTCAACAGCTTCAAAGTTCGTTATCACCCATAAATACAAATG TCTTATCTCCTAATAACGGTGAGCATCCTCTAAGAGATTCTTCATTTGGTGTCTCTTCGCCTGGAAGGATGTCACCAAGA AGTGTGGAACCCCTCTCTCCAGGGAGCTCTCGATTATCAGCATTTGCTCAGCGTGAGAAACAACAGCAACAGCTGCGGAG CCTTAGTTCAAGGGATCTGGGCGCCAACAATCCTGCCTCAATTGTTGGGTCCCCTATTAACTCCTGGTCTAAGTGGGGAT CTCCTACTGGAAAAGTAGATTGGTCTGTAAATGGAAATGAGCTAGGTCGATTACAAAGATCATCCTCATTTGAGCTTGGA AACAATGGAGAAGAGCCTGATCTATCATGGGTCCAATCCCTTGTCAAGGACACCCCACCTGAAATAAAAGAGAAGTTGGC AGTGTCTGGCCCTATTGCATCTGCTGATGGACTGAATTCCAATTTTCAAATGGAGACTGTTGATAATTCTGTTTTAGAAG CCTGGCTCGAGCAAATGCACCTGGATCAGCATGTAGTTTATAGTCAAAATTGACCCTTATACATTTTGTTGTGGTAACTA GTTAATTCCATAAGGTACATTTTCCTTTGGTTTAATGGGTCCAACAAGGAGGAAATGTAATGATACTATAGATGGACGGT AGATGGCTGCAATGTTCCCCAAGGATAATTGATTCTTTTTACTCATAATTTTGTCATTCATTGTTTTACTAAAGAGCTTC AGCAAGAGAAGAAAGCTTCTCTCTTGGCTGATATCTTGTAGAGAAGAAAAATCCTGTAAAGGTTAGGTGTTCTTAAAATA CTGTTGCAGGTCACTTTCCCCTCATTTTATTCTGATCCTGCCCTCAAAGACTGCTGATGGTTTTTGTATAGCAACAAAAC CAGTAGCTTCATTTGTTTGTAAGTTCCTTTTTGTGCACTATTACCTGTTAAGAATCTTTCAGTAATTTTCTATGGCTATC TTATCGTCTATATTTTTTGAAGTTTAAGGTGTACCCTCCGGTTTACTGTTTCTTTACAAATTCAATGCAATGTTTGTTTC TTGGAGAGAAGTTTTAGGCCTTGTTTTGAGTGCTTATCCCAAGTGTTTGAAAGAGAGTTTGTGTAAATAGTTTATGGTCT ACCTAGAAATTATTGAAGCGTATTTTCATGAGCTGAAGAGC
CDS sequence (LotjaGi3g1v0122600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACGGTGATTCAGAGATTTCAAAATCTGCTTCAACTTCATCTGCGGTAGAAGGTTCAACTTACGTCAAAGACATGAA AAATCTAACTGTTCATACTGAAGATTCTTTTTCCACCTTACATGAACTTGCTTCTAACAATGATTTTGAAAGTTTCAAGC TAGCTTTAGACAGGGATGCTTCTCTAATAAATGAAGTTGGCCCCTGGTATGTCCGTCAAAGTGGATCCAAACAAATTGTT CTTGAGCATAGAACTCCTTTAATGGTTGCTTCTTGCTATGGGAGTATTGATGTTTTAAAGCTTATACTCACATGTTCAGA GGCTGATGTAAATTTCTCCTGTGGGAATGATAAAAGCACTGCCCTTCACTGTGCCGCTTCAGGCGGTTCTGTTAATGCAG TTGATGTTATGAAGCTGCTTTTATCTGCTGGTGCTGATATCAATTGTGTGGATGCTAATGGAAACCGTCCTGTTGATGTT ATTGTTGTTCCTCCTAAGTTCCAAGGTATGAAAACAATTATTGAAGAACTTCTCTCAGATAGTGCTTCTGATGGGTCTGT TGATACCTGCTTTCTTCCAGTATATGTTAATTCATCAAGTCCTAGTTTAGCTGCCCATTTATCATCCCTTGAAAATGGGT TGCCATCCTCTCCTGTAGCTTTGAAGTTCAATGATGCAACTATCAATTCTACATCTGAGAAAAAAGAATATCCAATTGAT CCATCACTTCCTGATATAAAAAACAGCATATATGCCACAGACGAGTTTCGCATGTTTTCATTCAAGGTTCGCCCTTGCTC CCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCTGGAGAGAATGCCCGTAGGAGAGACCCCAGAAAGT TCCATTACAGCTGTGTGCCATGTCCTGAATTTAGAAAAGGGGCTTGTAGACGTGGGGATATGTGTGAATATGCCCATGGA GTATTTGAGTGCTGGCTACACCCTGCTCAGTATCGGACAAGACTCTGCAAAGATGGCACTGATTGCAACAGAAGGGTATG TTTTTTTGCTCACACTACTGAAGAGCTGCGTCCATTGTATGTGTCCACTGGGTCTGCTGTACCTTCACCCCGATCTTCTG CCTCTGCTCCTAATGTCATGGACATGGCTGCTGCAATGAGCCTTCTTCCATGTTCACCGTCAGCGATTTCTTATGTGGCT CCATCCCCCTTTGCACAGCCAATATCTCCATCTGCCAATGGCATGTCTCACTCATCTACTGCTTGGCCGCAGCCAAATGT GCCTGCGCTTCATTTACCAGGAAGCAATATTCAAACTAGCCGTTTGAGATCTTCTCTTAGTGCTCGCGACATGCCACCTG AAGACTTGAATTCGGTACCAGACTTCGATGGCCAGCGTCACCTGTTGAATGACTTGGGCTGTTTCTCCCAACCGTGTACT GGTTCCATTTCAATGAGCCGATCTGGTTGGTCTAAGACACTAACTCCATCAAATCTTGATGATCTATTTTCAGCTGAAAT TTCTTCGTCTCCTCGGTATTCTGACCCAGCAGCAGCTTCTGTATTTTCCCCAACACATAGATCAGCAGTTCTCAATCAGT TTCAACAGCTTCAAAGTTCGTTATCACCCATAAATACAAATGTCTTATCTCCTAATAACGGTGAGCATCCTCTAAGAGAT TCTTCATTTGGTGTCTCTTCGCCTGGAAGGATGTCACCAAGAAGTGTGGAACCCCTCTCTCCAGGGAGCTCTCGATTATC AGCATTTGCTCAGCGTGAGAAACAACAGCAACAGCTGCGGAGCCTTAGTTCAAGGGATCTGGGCGCCAACAATCCTGCCT CAATTGTTGGGTCCCCTATTAACTCCTGGTCTAAGTGGGGATCTCCTACTGGAAAAGTAGATTGGTCTGTAAATGGAAAT GAGCTAGGTCGATTACAAAGATCATCCTCATTTGAGCTTGGAAACAATGGAGAAGAGCCTGATCTATCATGGGTCCAATC CCTTGTCAAGGACACCCCACCTGAAATAAAAGAGAAGTTGGCAGTGTCTGGCCCTATTGCATCTGCTGATGGACTGAATT CCAATTTTCAAATGGAGACTGTTGATAATTCTGTTTTAGAAGCCTGGCTCGAGCAAATGCACCTGGATCAGCATGTAGTT TATAGTCAAAATTGA
Protein sequence (LotjaGi3g1v0122600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYGDSEISKSASTSSAVEGSTYVKDMKNLTVHTEDSFSTLHELASNNDFESFKLALDRDASLINEVGPWYVRQSGSKQIV LEHRTPLMVASCYGSIDVLKLILTCSEADVNFSCGNDKSTALHCAASGGSVNAVDVMKLLLSAGADINCVDANGNRPVDV IVVPPKFQGMKTIIEELLSDSASDGSVDTCFLPVYVNSSSPSLAAHLSSLENGLPSSPVALKFNDATINSTSEKKEYPID PSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHG VFECWLHPAQYRTRLCKDGTDCNRRVCFFAHTTEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPCSPSAISYVA PSPFAQPISPSANGMSHSSTAWPQPNVPALHLPGSNIQTSRLRSSLSARDMPPEDLNSVPDFDGQRHLLNDLGCFSQPCT GSISMSRSGWSKTLTPSNLDDLFSAEISSSPRYSDPAAASVFSPTHRSAVLNQFQQLQSSLSPINTNVLSPNNGEHPLRD SSFGVSSPGRMSPRSVEPLSPGSSRLSAFAQREKQQQQLRSLSSRDLGANNPASIVGSPINSWSKWGSPTGKVDWSVNGN ELGRLQRSSSFELGNNGEEPDLSWVQSLVKDTPPEIKEKLAVSGPIASADGLNSNFQMETVDNSVLEAWLEQMHLDQHVV YSQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 190 | 186 | 3.9E-22 | ||
| PANTHER | 15 | 714 | 700 | 0.0 | – | |
| PANTHER | 15 | 714 | 700 | 0.0 | – | |
| SUPERFAMILY | 29 | 180 | 152 | 1.21E-19 | ||
| SMART | 35 | 65 | 31 | 290.0 | ||
| Pfam | 40 | 151 | 112 | 2.8E-10 | ||
| SMART | 82 | 112 | 31 | 0.02 | ||
| ProSiteProfiles | 82 | 189 | 108 | 18.775 | ||
| ProSiteProfiles | 117 | 152 | 36 | 12.529 | ||
| SMART | 117 | 149 | 33 | 2.7E-5 | ||
| Gene3D | 292 | 362 | 71 | 5.4E-6 | – | |
| SMART | 295 | 321 | 27 | 9.5E-6 | ||
| Pfam | 299 | 319 | 21 | 1.2E-5 | ||
| ProSiteProfiles | 300 | 322 | 23 | 12.981 | ||
| SMART | 330 | 353 | 24 | 51.0 | ||
| MobiDBLite | 543 | 613 | 71 | - | – | |
| MobiDBLite | 543 | 569 | 27 | - | – | |
| MobiDBLite | 577 | 613 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0122600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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