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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0124200 |
| Transcript ID | LotjaGi3g1v0124200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT2G42280.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q66GR3|BH130_ARATH Transcription factor bHLH130; TrEMBL-Plants: tr|A0A0B2RB48|A0A0B2RB48_GLYSO Transcription factor bHLH130; Found in the gene: LotjaGi3g1v0124200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:15176407..15179518) extracted from Lotus japonicus Gifu genome v1.2.
GTCAACGGTTGAGAGAATGAAAAAATAAAGGTTAACATGGACCACTTAAATCACCAAGGCATAATCGTTATATTGTGGAA ATATAAGGGTCATTGCTGCACAACAAGTTGCATAAATATCACAACTTCAAGACAAGACACCAGAACTCTTTAGTCTTCTC TTCTCTTCCCACTTGTATCTGATCTTTTTTGTGTACACATTTGAGTTATGAGTCAAATACAGTGAGCTGAAGAACTTCAA TTTTGGATTTGAATGAGCCAAAATTTGAGTTGCAACTTGCATGCATGTATGTTTTTTTTTTTTTTTTTGAAAGTAGCATG CATGTATGTTCTTTATTGCCCATGTTGATTTTCTGACTTTTTAATTCCCAAAAGCTACTCTAATTGCAGTAGGCACAGAA TTCAAGAAAGATTTTGAGTTGTTGTGTGTTTGATTTAACTTTTACATAGCAATTCAATGTGTGTTTACATATTTCTGTCC TTAGTTTGAATGTGATTTTAACTAGTTCATGTCTTTCACGGTATTGGTATTGAAGTGAACGTGTTTTTATCCAATTTGAA CGTAAATACAAACACATTCAGAAATGGATTCAAGTATTGGGCATCCACAACAACACAATTCTGGTCTATTGAGGTACCGT TCTGCTCCAAGCTCATTTTTAGCAAGCCTTATTGGCAACAACAACAATTTTGGCTGTGTGAATGAGGAAGCTTTCACAAG TGAGGATCATCATCAGGGTTATCATCTTCCATCCTCAAGTTCAGAAATGGAGACCATATTGTCCAAATTGGTTTCATCCA ACCACAGATGGAGCAATTCAGAACCTATGCAAGAGTTTGGGGACAAGCCTGTGAAGCAGGAAATTAGGGAGTCGGCTCAA GAGAATGATTACTCTTATGGAGGATCTCAATTACTTTACAATTCAGAGCAAATTCAAGGGTTTGAAAATGGTTCTTCCAA TGGGTTTTATAGCTCTTTGGGTTTAGTGAACTCCATGGTTTCAGAGAAATCAACTCAATCTAAAATGGGTGTCAGCAATT GCTCCAATCTCATTAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCAATGCAAATGGTATGCCTCATTTTCTATTACTT CCTATCTATTATAGTATTGTTTCCTTGTGATTGTTAATATTATCTTATATTTGTAAATGATAAATGTATGGCTTAAGTGC CACTTTGGTTCACCGTTAGAAAGTACGAAACCGGGCAGGATTTGTTATTTACCGGTTTTGGTAAGGCAAAGGATTCTAAA TTGAAATCCTTTTCTTTTATGAAATCAATTTCAGAACCAGAACCTGATAAATGAACAGCAAGGTCATATCTGTTGAATTA TGGAAACATCCAGCATAAACTAGACCTTGCAAGTTACTTAGGGAGTCAGGGTTGATTAAAATCAAACCCTTCATTTTCTT TTTTATGAGTACTTATTTTAACTGCAGGTTTTGCAGCAACTAGTGGGTTGAATGGTACTGAAAATTTCTCATCTAGGCTA CCATCCTCTTGCTTGACAAGGATGCCACAAATAGCTGAAAACAGAAATGAAAGCTTAGAAATAAATTGTGACCAAAGTAA CCTGGAAAATTACAATAGCAGCTCTAAATCTTATATGCCCAGCTTCACCAGTGAAATCTGGGACAATTCTGCATTCCATT CCCAGAAAACAGAATGTGAGGATGAAATCGTATTTTCTACTTCAAATGGTTTAGAATCTCAGGTATACAAGGAGTTTTAT GATCATCCTTTCATTTCAAAGAATCGAACTTTTTTCCACTTTTGATCACTGAAAGTTGTTGTCATCATCAGGAAGAAGAT TTTTGCTATCAAAATCTTGGTTTGACTCACCATTTGAGTGTTCTTAGTCCTTCTGCTAAGATAGCATCCATAAAGAAGTT TCTCCAAATTCAAGGATCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAAA GGGTAAGATTCTACCTCCTCTAACAATTATAAATCTGTAGCCAATCCACCATATTAATTACATTATGCGACTTAAGGGCA CAAACGGAAAAACACATCCCAACGCATCAACAGAAAAGCGAGATTTTAACATGTTGACTCAAATGTGGATTGGAGTTGAG TTTAACAGAAATCCAAATATACACTAAGAATTTCATGTATGTTATGGGATTTGCAAATTTTAGGTAAGAAGAACACGGAT TAGTGAAAAAATCAAGAAACTGGAAGGCCTTTTTCCAAAATCAGACAAGGTATTATAAGTCTCTCACTTGCATATCACAT GTTGATTGAATTGAAACTTCATATGCATTTTGGTAACTTGATGCTTTACCTCTTGGCAGCAAACAAGCACAGCAGATATG TTGGATTCGGCAGTTGAGTACATTAAAGACCTGCAAGAACAAGTTAAGGTATAAGAGAGTATAAGCCTTACCATTAACAC ATTAAAGTTAAACGCCACCAAAGTCTGCATTCTCTAACTCAATTTCTTCCACCTGCAGACACTCACAGATTGTAGAGAAA AGTGCAAATGTACAAGGAATGAGAAGCAATACTCTAGATGTTGTACATAACTTATATCCATGTAGACAGGAAGGAGGATT TCTTTTTAAAGGAAAAAAAACTACTTAATGTGTAGACAAGTTGGCTATTGTAATTATAGAAAACAATGATTATTAAATGT CTAGTATGAACTTAGGTATTGGTGATCATTTTATTTCACTTTTTTATTTCAATTTTCCCTGGATTTTCTTTTCCTTTTTA GCTTGATTTAAAGATCATTATGTACTAGCACCAATATTTGTAGCTCTTCAATTTATATAATAGAGGTTTTATTGCATTAC AAGCTGACAGAAACTGCGATACAATACTCAATTCTCTGTCTAGCCAAGTGACCACCCTTCCAATGCTAATAAAAATAAAA CTAGTAATGTAATTGATAAAATAAAAAACAATTATGATACGTGAACACTAGACACCCCAAACCATTTGGTGCCACACTAT ATAAGCTAAGTGAATGAGTCAGCAGTACATGTTGATTAAGCTATTGTGCGCAAAAACGAAAACGAAACCCCC
CDS sequence (LotjaGi3g1v0124200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCAAGTATTGGGCATCCACAACAACACAATTCTGGTCTATTGAGGTACCGTTCTGCTCCAAGCTCATTTTTAGC AAGCCTTATTGGCAACAACAACAATTTTGGCTGTGTGAATGAGGAAGCTTTCACAAGTGAGGATCATCATCAGGGTTATC ATCTTCCATCCTCAAGTTCAGAAATGGAGACCATATTGTCCAAATTGGTTTCATCCAACCACAGATGGAGCAATTCAGAA CCTATGCAAGAGTTTGGGGACAAGCCTGTGAAGCAGGAAATTAGGGAGTCGGCTCAAGAGAATGATTACTCTTATGGAGG ATCTCAATTACTTTACAATTCAGAGCAAATTCAAGGGTTTGAAAATGGTTCTTCCAATGGGTTTTATAGCTCTTTGGGTT TAGTGAACTCCATGGTTTCAGAGAAATCAACTCAATCTAAAATGGGTGTCAGCAATTGCTCCAATCTCATTAGGCAAAAG AGCTCCCCTGCTGGATTTTTCTCCAATGCAAATGGTTTTGCAGCAACTAGTGGGTTGAATGGTACTGAAAATTTCTCATC TAGGCTACCATCCTCTTGCTTGACAAGGATGCCACAAATAGCTGAAAACAGAAATGAAAGCTTAGAAATAAATTGTGACC AAAGTAACCTGGAAAATTACAATAGCAGCTCTAAATCTTATATGCCCAGCTTCACCAGTGAAATCTGGGACAATTCTGCA TTCCATTCCCAGAAAACAGAATGTGAGGATGAAATCGTATTTTCTACTTCAAATGGTTTAGAATCTCAGGAAGAAGATTT TTGCTATCAAAATCTTGGTTTGACTCACCATTTGAGTGTTCTTAGTCCTTCTGCTAAGATAGCATCCATAAAGAAGTTTC TCCAAATTCAAGGATCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAAAGG GTAAGAAGAACACGGATTAGTGAAAAAATCAAGAAACTGGAAGGCCTTTTTCCAAAATCAGACAAGCAAACAAGCACAGC AGATATGTTGGATTCGGCAGTTGAGTACATTAAAGACCTGCAAGAACAAGTTAAGACACTCACAGATTGTAGAGAAAAGT GCAAATGTACAAGGAATGAGAAGCAATACTCTAGATGTTGTACATAA
Protein sequence (LotjaGi3g1v0124200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSIGHPQQHNSGLLRYRSAPSSFLASLIGNNNNFGCVNEEAFTSEDHHQGYHLPSSSSEMETILSKLVSSNHRWSNSE PMQEFGDKPVKQEIRESAQENDYSYGGSQLLYNSEQIQGFENGSSNGFYSSLGLVNSMVSEKSTQSKMGVSNCSNLIRQK SSPAGFFSNANGFAATSGLNGTENFSSRLPSSCLTRMPQIAENRNESLEINCDQSNLENYNSSSKSYMPSFTSEIWDNSA FHSQKTECEDEIVFSTSNGLESQEEDFCYQNLGLTHHLSVLSPSAKIASIKKFLQIQGSVPCKIRAKRGFATHPRSIAER VRRTRISEKIKKLEGLFPKSDKQTSTADMLDSAVEYIKDLQEQVKTLTDCREKCKCTRNEKQYSRCCT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 378 | 372 | 4.4E-117 | – | |
| PANTHER | 7 | 378 | 372 | 4.4E-117 | – | |
| ProSiteProfiles | 310 | 360 | 51 | 13.306 | ||
| Gene3D | 312 | 383 | 72 | 1.1E-12 | ||
| SUPERFAMILY | 313 | 376 | 64 | 6.28E-14 | ||
| CDD | 314 | 365 | 52 | 2.95751E-9 | ||
| Pfam | 316 | 361 | 46 | 2.7E-9 | ||
| SMART | 316 | 366 | 51 | 5.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0124200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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