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LotjaGi3g1v0130800.2

Overview

Field Value
Gene ID LotjaGi3g1v0130800
Transcript ID LotjaGi3g1v0130800.2
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description ATP-citrate synthase; TAIR: AT1G10670.1 ATP-citrate lyase A-1; Swiss-Prot: sp|Q9SGY2|ACLA1_ARATH ATP-citrate synthase alpha chain protein 1; TrEMBL-Plants: tr|K7L723|K7L723_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0130800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:16334924..16336693) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGAGGGGAGCTAGATGACACTGCTGCTTTCAAGAATTTTAAGAAGTGGGTTTCTTCCATCCAAAGAGTATTAACTTT TATAAGGATGCATATAATTGTTAATATCTCTAACTAATCAAGAAAAACTGAATCATATTTCACAGTTCACATTTTTTATT GAGTATGCGTGTTGTTATTATTTTCAGATGGGGAAACATTGAATTTCCATTGCCATTTGGAAGGGTTATGAGTCCTACCG AGACTTTCATTCATGGATTAGATGAAAAGGTGAACAAATATAATTTTCAGCTTTATCTACAATTGCATTCAATTCATTTA TAACTTTGTCCTTAAGCTGCAAATCTCAATCATCTTTGCTTCTATGTAATACTAAGATATGGTCTGCAGATTGTCAGGGT CAATTAAATTCCTTGTACCAACCTCTTATCCATCATGAATAATATCATTTCTTCTAGTTATGGTTGTATGAAAGTTCTAT GAAAAGCTTATGATGTTTGTTTGGATGTTTTCTGCTGCCAGACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAGAG GGCCGGATTTGGACAATGGTAGCTGGGGGAGGCGCTAGCGTCATCTATGCTGACACAGTGTGTTTCTATTACTTCAGAAC TAAATACATTGCTAAACTATATTCTCTCTTGATATTAAGCAACAAATACTAATTTATTAAAACAGGTAGGAGATCTTGGC TATGCTGCTGAGCTTGGAAATTATGCAGAATATAGTGGTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTTGT CATTGATGTAATTAATTCATCTCACTACATTGTTTTCAGTATAATCATTTCCGATTTGCAGATTCAATATTGTTCCTTTA ACATGATGAGCCATTCTTTCTTTGGAGTGTGTAAGGGTACTTGAAACTGATACTGTAGTGATTTTAGTTACATGTCCATG ATAATCTCTTTGCAGTGTGCAACTGCAAATCCTGATGGCCAAAAGCGAGCACTTGTGATAGGGGGAGGAATAGCTAACTT CACCGACGTTGCTGCTACATTCAGTGGCATAATTCGAGCTTTGAAGGAGAAGGTAAGCCTTATCACAATGAAGCTATGCT CAGTTATATCAAACGATGATTTGCTTGTAGCAGAGTTAATAAATTATTGAGCTTTATTACAAACCAGGAACAAAAGCTAA AAGAAGCAAAGATGCACCTCTATGTCAGGAGAGGAGGTCCCAACTACCAGAAGGGCCTAGCGAAAATGCGGGCACTTGGA GAGGAGATTGGCATCCCTATTGAGGTGGTACAACTGATACCTTTATTGATTGTGTTGAGAAGTCCACGTTGACTAAAGAT ATAACTAAATAATTCATTAAAAAGAGTTATGCAACCCTCACCCTTAAACTAGTTTTTGGGGTAGAGTTAGTCATAACTCA TAACCTAATTCTAATATGGTATCAGAGCTTATCATCGACCCATTTCTTGGGCCACCCGCTAATGGGCTACCCGCATATGT CCAGTCCAGCCCTAGGGGTCATGTGTGTTGAGAAGTCTCACATTGACCAGAGATATGATTCAATAATTCCTTATAAAGAC CTTACCCAAATTCTAATAGGTTGTTTTAAAACCAACTTATTGTGTTCATCAAGTTTGTTTTGAGGAACTTCCTCTTATCT AATATGGTCTCTTTCCAGGTTTATGGACCCGAAGCAACAATGACTGGTATATGCAAACAAGCAATCCAGTGCATCACTGC TGCTGCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0130800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAGGGGAGCTAGATGACACTGCTGCTTTCAAGAATTTTAAGAAATGGGGAAACATTGAATTTCCATTGCCATTTGG AAGGGTTATGAGTCCTACCGAGACTTTCATTCATGGATTAGATGAAAAGACAAGTGCATCTTTGAAATTCACAGTATTAA ACCCAGAGGGCCGGATTTGGACAATGGTAGCTGGGGGAGGCGCTAGCGTCATCTATGCTGACACAGTAGGAGATCTTGGC TATGCTGCTGAGCTTGGAAATTATGCAGAATATAGTGGTGCACCCAAGGAAGATGAGGTCTTGCAGTATGCCAGAGTTGT CATTGATTGTGCAACTGCAAATCCTGATGGCCAAAAGCGAGCACTTGTGATAGGGGGAGGAATAGCTAACTTCACCGACG TTGCTGCTACATTCAGTGGCATAATTCGAGCTTTGAAGGAGAAGGAACAAAAGCTAAAAGAAGCAAAGATGCACCTCTAT GTCAGGAGAGGAGGTCCCAACTACCAGAAGGGCCTAGCGAAAATGCGGGCACTTGGAGAGGAGATTGGCATCCCTATTGA GGTGGTTTATGGACCCGAAGCAACAATGACTGGTATATGCAAACAAGCAATCCAGTGCATCACTGCTGCTGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0130800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRGELDDTAAFKNFKKWGNIEFPLPFGRVMSPTETFIHGLDEKTSASLKFTVLNPEGRIWTMVAGGGASVIYADTVGDLG YAAELGNYAEYSGAPKEDEVLQYARVVIDCATANPDGQKRALVIGGGIANFTDVAATFSGIIRALKEKEQKLKEAKMHLY VRRGGPNYQKGLAKMRALGEEIGIPIEVVYGPEATMTGICKQAIQCITAAA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23118
1 211 211 7.3E-142 –
PANTHER
PTHR23118:SF26
1 211 211 7.3E-142 –
Pfam
PF16114
28 205 178 1.2E-80
IPR032263
Gene3D
G3DSA:3.40.50.261
31 191 161 2.0E-65
IPR016102
SUPERFAMILY
SSF52210
44 189 146 5.19E-19
IPR016102

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0130800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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