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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0133500 |
| Transcript ID | LotjaGi3g1v0133500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cation efflux family protein; TAIR: AT1G16310.1 Cation efflux family protein; Swiss-Prot: sp|Q0WU02|MTP10_ARATH Metal tolerance protein 10; TrEMBL-Plants: tr|I1KTX5|I1KTX5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0133500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:16917879..16921751) extracted from Lotus japonicus Gifu genome v1.2.
AATCCGAACGGTTTTAAATTGAATAGTACTATTGGATACAACTTTTCACTTTGGTTTTTTTTGGATACATTGGAAAGCAA CTTTTGACTTTGGTGATTCTGATAAAATCACTATTTTCTAGTGATTCAGATCGATAAATGAGATCACAAAGAAATTCTTA CGTTACCACGTGTCTTAGTTGATGAGTTTTTCGCACTTCCGTGTCTCCTTATAACTAGGAGACTATAGGGAAGTTTGTTA CACATACACATACTTCAAACCAAACCGAACCAAAACAAAACAACACAACTCATCATCACCAAACCTTGCAACATGGCGGA GAGTGGTGGCGGAGGAGGACACGGCAGAATGGAACCACTTCTTGTTACACCGGAGGAACAAGGTGGTGGAGGAAACCCTT CATGGAGACTCAACGTGAAGGAGTTTCATCTACCAAACCAAACTGTTGATCATCAAAATAAGTGTTTAAATGGCCTAATT CGAAAACCCAGTAAGCTTTTCTTCTTCTTTTTGTTTTCTTGAAGGTTTTAACTCTAAGACTCTGTTCTTTGTGTTGAATT GATTGTAGTGACCAACCCAGTAAACCATACATCATGTTTTTCCACTTTTTCTTTACTTGAATGTCTAAAGATTCTATTTT GAGAAATGGGTTGGTTCAGTTTTGTTTTGTGGTTGAGTTCTGCAAATTGCATGTGACAATTTTTCATCATTTTTTCTAAT TTTTCTTCCCTTGAATGTTTAAACTTGTAAGTCTCTGTTTTTGTTCTGTGTGGTGGGTGATGTGTTGAATTGTGCTGTTA ATCTTTATTTGTTTTTAATCTTTATTTGTTGTTTATTGTAGTGGAATGTCTATTCAAAGGATGAGCCTTTGTTTGTGAAT ATGCATTTTGGTGCGAAAGTAGTTTGGTATAATTCGATTTGTTTAATCAAAAGTAGATGGGGATTGGTGCTTTATCTAGT GATGATAATTGATAATGGTGTCTTTTCGTTTTTTCTTTCTGAAGATACTCCATTACTCAAATCAGAAAATTTCATTCTTG TTAGAACCTCTTATTTAAACTTGATTCCATGTATCAAAACTGAATCAGACATGAATCTCCCTGCCCTCAATGCCTTATAA TGAGATACATTTCAGATCACTCTTTAGTACTTTTTTTATTCAAGAATTCATTGAAGATAAGCATAATTAATGGCCAATTC TTTTTTCCTTGTACCAAAATAAATAAATAAAGAATTTAGCATTAGATTAAATTTGGTCTTCAATATATACTCACAGCTTG TGTTGTAGGGAAGCAACGCAAAGTGGCAGAATATTACAAGAAGCAAGAGAGACTCCTTGAAGGATTTAATGAGATGGACA CTATGACTGAAAAGGGCATTTTCCCTGGTGGTCTCACTCAGGTTGATTTTTCTATCACGATGATTTACTTGTGATTTGTC TTAGATAGGGTTGTCAAATAGCGGATATTGCGGCGCGATATAGTGTAGACCTCTTAGGTTTCACCGCTTTTTTCCGCTTG AGGGCTTGACATAGCAGATTTTTAGCTTTATACTATTTTCCGCGATCCACTATAAACAAAGCCTGATCATCATAAACCCA CCCAGATTTAAGAACCAAACTTAGCTACGGTATTGCACATACTATTTTTAATATTACCTGATTAAGAAACTAAACCACCC GACTTCCCCCAAACTTTCTCCGTGTACACAATTGTGTCTAAGTTTTATCCATAAAGAGAATTGAGATTTATACTAAACAA ACATGCATTTTGTTCCTCAGGATGAAATGAAGCAACTAGCTAAGAATGAACGTTTCGCGGTCACTGCGTCAAACGTGTGT AACTTGATTCTCTTTGGGGCAAAGGTTTTCGCCTCATACGAGAGCAGATCATTAGCAGTCCTTGCCTCAACCTTGGATTC TCTCTTGGATCTCTTGTCAGGGTTCATATTGTGGTTCACTTCATATTCGATGAAAAAACCGAACCACTATCACTACCCAA TCGGAAAGAAACGTATGCAACCAGTGGTAAGACTTGATTCACATTTTAAACTACAGTCATTGATCAGTCCTTTAAATTTT TTAGTAAATTCAATCCATCAATGTAATTTCATAATGTCCTGAGAATGAGAATGAAAATTTGTGTTAATTGGTTTCTATGC AGGGTATCATTGTTTTCGCATCAGTTATGGCAACCTTGGGGTTGAATATTTTGATTGAATCTTGCAGGCAACTTGTTGCG AAGGTAACTCAGATCAACTTTAGGAACTTAAACAGCTGTGTCAGCAGTAGAAGTGTTAAATTTTACTCAGATTTTCCTTT ATTTATTACCATGATACATGTTTTAAATCTATCATTTCATTGTTTTTCTTTCAGTCTAAACCTGATGGGGATCCAACAAA GGAGAAATGGATGATTGGGATCATGGTATCTGTGACTGTAGTCAAGTTCATTCTTATGCTCTATTGTCGAAGATTTAAAA ATGAAATTGTGAGAGCATATGCACAAGATCATTTTTTTGATGTCATTACTAATTCCGTTGGATTAGCCGCTGCTGTTCTA GCTATCAAGTTCAAATGGTGGATTGATCCAATAGGAGCCATTATTGTGAGTTCATACCTACTGCTTATTTTAATTCTCAT CTCACTCTGAATTCTCTGATTAGGCTCACATATTCAACAAGTATTATTATCAGTAATTGATTTTCCCAAAATCTACAATG ACTATAAGTTCCCTGTATTTATGTTCCACTTCAAAATCATTGAAAATGTTGTGTTTTTTTTTTGTTACATGCTGATTGTT TGCTTAGGACAAAAGTTACCTAGTATTATAGGTAATGTATGTATTGATGTCTTGATGAAAAACTCGGTTACCCACTTTCT TACTATTTTATTAGTTTTATTAATGTGCTAATTTCACTCAACTTTTCATTTTTCATCCCAGCTGGTATCATGTTTTAATT GTATAACTGTAAAAACATGTATAGAACTGTCTAAGTTTTGTCCATCATCGATGGTTTACTCATACTAATAATGATATTCT GAATATCTGTAATGCAGATAGCATTGTATACAATTAACACATGGGCGAAGACCGTGATTGAGAATGTTTGGTCGCTAATT GGAAGGACAGCGCCGCCTGATTTTCTTGCTAAGTTAACCTACCTTATATGGAATCACCATGAACAGATTAAGCACATTGA CACGGTTAGAGCATACACCTTTGGGGCAGAATACTTTGTGGAAATTGACATTGTTTTGCCACAAGACATGCCTCTCCACC TTGCTCACAACATTGGTGAGACACTCCAAGAGAAGGTGGAACAACTTCCAGAAGTTGAGAGAGCTTTCGTGCACATAGAT TTCGAGTTCACTCATAGACCTGAGCATAAGATCATGGTATGATAGGGGTCAGCGAATGAGACATCGAATGAGACATCATT TGAGGACAAATTGATTCCGTACGTTAGTGATTAGTGACATATCACAATGTTGATTCTCTTGATAATGTTATTTAGGCCAA ATAAGACAACTTTGCTTTATGATGATGATATGTCAATAGTTGCTGATTGATTCCTTGGATTAAACGTTCTATGATATATT TTCATCGACTTAAAATGGTTGCTAGTGTTTGTCTATGTGATGCTATGATGCTATGATCACTAAGTTCGATTGGGGCAAAA ACCGATGCTGAAGATTTCATGCAAAACATAACGCTTGTATTGATTTTCTAGTGACATCGAATGTTTCAGACACACGTAAT GATTAAACGTTCTATAATAAGTTTATTCCATCTGAAATTGTGTTGACATACACGTCAAAAACCAAAAAAAAAAAAATTGC TTTATTATATCTGAAATTGTGTTGACATAGACG
CDS sequence (LotjaGi3g1v0133500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAGAGTGGTGGCGGAGGAGGACACGGCAGAATGGAACCACTTCTTGTTACACCGGAGGAACAAGGTGGTGGAGG AAACCCTTCATGGAGACTCAACGTGAAGGAGTTTCATCTACCAAACCAAACTGTTGATCATCAAAATAAGTGTTTAAATG GCCTAATTCGAAAACCCAGGAAGCAACGCAAAGTGGCAGAATATTACAAGAAGCAAGAGAGACTCCTTGAAGGATTTAAT GAGATGGACACTATGACTGAAAAGGGCATTTTCCCTGGTGGTCTCACTCAGGATGAAATGAAGCAACTAGCTAAGAATGA ACGTTTCGCGGTCACTGCGTCAAACGTGTGTAACTTGATTCTCTTTGGGGCAAAGGTTTTCGCCTCATACGAGAGCAGAT CATTAGCAGTCCTTGCCTCAACCTTGGATTCTCTCTTGGATCTCTTGTCAGGGTTCATATTGTGGTTCACTTCATATTCG ATGAAAAAACCGAACCACTATCACTACCCAATCGGAAAGAAACGTATGCAACCAGTGGGTATCATTGTTTTCGCATCAGT TATGGCAACCTTGGGGTTGAATATTTTGATTGAATCTTGCAGGCAACTTGTTGCGAAGTCTAAACCTGATGGGGATCCAA CAAAGGAGAAATGGATGATTGGGATCATGGTATCTGTGACTGTAGTCAAGTTCATTCTTATGCTCTATTGTCGAAGATTT AAAAATGAAATTGTGAGAGCATATGCACAAGATCATTTTTTTGATGTCATTACTAATTCCGTTGGATTAGCCGCTGCTGT TCTAGCTATCAAGTTCAAATGGTGGATTGATCCAATAGGAGCCATTATTATAGCATTGTATACAATTAACACATGGGCGA AGACCGTGATTGAGAATGTTTGGTCGCTAATTGGAAGGACAGCGCCGCCTGATTTTCTTGCTAAGTTAACCTACCTTATA TGGAATCACCATGAACAGATTAAGCACATTGACACGGTTAGAGCATACACCTTTGGGGCAGAATACTTTGTGGAAATTGA CATTGTTTTGCCACAAGACATGCCTCTCCACCTTGCTCACAACATTGGTGAGACACTCCAAGAGAAGGTGGAACAACTTC CAGAAGTTGAGAGAGCTTTCGTGCACATAGATTTCGAGTTCACTCATAGACCTGAGCATAAGATCATGGTATGA
Protein sequence (LotjaGi3g1v0133500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAESGGGGGHGRMEPLLVTPEEQGGGGNPSWRLNVKEFHLPNQTVDHQNKCLNGLIRKPRKQRKVAEYYKKQERLLEGFN EMDTMTEKGIFPGGLTQDEMKQLAKNERFAVTASNVCNLILFGAKVFASYESRSLAVLASTLDSLLDLLSGFILWFTSYS MKKPNHYHYPIGKKRMQPVGIIVFASVMATLGLNILIESCRQLVAKSKPDGDPTKEKWMIGIMVSVTVVKFILMLYCRRF KNEIVRAYAQDHFFDVITNSVGLAAAVLAIKFKWWIDPIGAIIIALYTINTWAKTVIENVWSLIGRTAPPDFLAKLTYLI WNHHEQIKHIDTVRAYTFGAEYFVEIDIVLPQDMPLHLAHNIGETLQEKVEQLPEVERAFVHIDFEFTHRPEHKIMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 108 | 108 | - | – | |
| PANTHER | 6 | 396 | 391 | 5.2E-234 | – | |
| PANTHER | 6 | 396 | 391 | 5.2E-234 | – | |
| SUPERFAMILY | 106 | 305 | 200 | 3.14E-44 | ||
| Gene3D | 107 | 304 | 198 | 7.9E-33 | ||
| Phobius | 109 | 128 | 20 | - | – | |
| TIGRFAM | 111 | 384 | 274 | 4.3E-34 | ||
| Pfam | 113 | 303 | 191 | 4.5E-35 | ||
| Phobius | 129 | 133 | 5 | - | – | |
| Phobius | 134 | 157 | 24 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 158 | 177 | 20 | - | – | |
| Phobius | 178 | 197 | 20 | - | – | |
| TMHMM | 179 | 198 | 20 | - | – | |
| Phobius | 198 | 216 | 19 | - | – | |
| Phobius | 217 | 237 | 21 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 238 | 397 | 160 | - | – | |
| TMHMM | 253 | 270 | 18 | - | – | |
| TMHMM | 274 | 293 | 20 | - | – | |
| SUPERFAMILY | 308 | 384 | 77 | 1.27E-14 | ||
| Pfam | 310 | 384 | 75 | 7.6E-12 | ||
| Gene3D | 311 | 385 | 75 | 3.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Cation transmembrane transporter activity | Enables the transfer of cation from one side of a membrane to the other. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0133500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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