Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0137700 |
| Transcript ID | LotjaGi3g1v0137700.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Epidermal patterning factor; TAIR: AT1G34245.1 Putative membrane lipoprotein; Swiss-Prot: sp|Q8LC53|EPF2_ARATH Protein EPIDERMAL PATTERNING FACTOR 2; TrEMBL-Plants: tr|K7MDZ9|K7MDZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0137700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:17879192..17883482) extracted from Lotus japonicus Gifu genome v1.2.
GAAGTGTTTGATTGAACGAATCAAAGTGCCACCTAATTGTTTTCTTTAAGAAATTGAAAGAAAGAGGCAAACGCGCGTTT CAATCAAGAGCGCAATTATTGGTCAAAACGCTTCCATCATCGTCTTGTTCTTTCGTTCCATTCTCTGTCACTGAGCTGAA CTATAAATTTCAAGCCATTTCAAACTCTGTTTCTGCAATTCGAATCGCGATTTCAACTGTTTTGATTTTCGAATTCGAAG ATGGCGACGTCGAACAAGATCGAACGCGGTCACCAGATGTACCGTGACGGACGATACAGCGAGGCGTTAGGGTTTTACAC GGAGGCGATCGCCATGGCCAAGACCAATCCTCAGAAGATCGCTTTGCATAGCAATCGTGCTGCTTGCTTCCTCAAGCTTC ACCATTTCAACAAGGTTCCCTTTCTTCTTGTTCCTAACGAATTTGAATTTTATGATTCTGCTATTTTCTAAATTATAGAA ATATTAGGTTATTTGAGTAGTGTGCTTGAGAGGGATGAACTGTTTGATTATTTAAAGTGTGTTGGAAATTGATCAGAATT CTGATTTTGACTGTCTGAATATGTCTGCTGGGTCATTGGTTAGCTGATGGGTAACTAATAATCAGTTGCCCTAGGTGTGA GGGGGCGTGTTAGAAGTCTCACATTGACTAGAGATTTGACATAGATAGCCTTTATAAAGGGTAGAGTAACGCTCAACTCT TGAGCTTGTTTTAGGTTGAGTTAGGCCTCCCAAATTCTAATAGAATTGGCTTGTGAACTTGCTTGCGACTACGGAGATTT ACTAAATTGACAGTGCTGTTTCCTTCTCTTGTGAATTCTTGATGGTGTTCTTTAGTTATGCCCTTTTGTTATAAATTGTG TACCACAATGGTTAGGATTTATTTTTTGGGTTTGAGACCTACGGTTTGAGCGTTAAATTAACTGAAAGAGGGTGAAACAT TTGTTACGATTTCAATATTTTGAAATGATGCCTGTTCTTGTCCTGCTCTCTGCACTTGTCTAGTTGCATGCTTTTGATGA ATGATTTCCAGTTTAAATACTTATTTTCTAGGATGCAATCATTTATTGTCACTACCATTTCAGGCAGCAGAAGAGTGCAC CTCAGTGCTTGAGCTTGATCACGAGCACAGTGGAGCTTTGATGCTGCGAGCTCAAACACTGGTGACCTTGAAGGAGTACC ATTCAGCACTTTTCGATGTCAATAGACTCTTGGAATTGAATCCAGACTCAGAGGTCTATCAAAATCTTCACGCCCGCTTG AAGACACAGTTGGTAAGGCGTTATCCCATATGTTTTCATTGCAGTTGCATAAATTGAGCAAGTTATGGGATTATGTTTGA CTGATTATTGTTGTTGTTCTTGTTCCAGATAATAAATAAAAACCATATGTTAGCAATAAAGAGTTGGATTTAATGTGTGT GTGTGTGTGTGTTTGAAGTTAGTGGACAAAGAAGATAGGTTACACAAACCTTTCAAATTTGGCCAAGATTTTTTATTTCA TGATTAATTTGCTTTGTGAACTTGTAATAAGAAATATTGTTTCTGTTCTTTTTTCCCCCTTGCTTAAGGAAAGTCACTTG CTCCAATACCAGAGTCAGAAGAGGAGTTTGAAGAACAAGGAGATGAGGAGGCTGAGCTGATGCTAAATAGAGATAATAAG AAGAAAGAGATGTTTGCTGCAACTTCTAATATTAGGATTGATCAAAAGGATGAGCTTGGAAAAAGTTTTATCGGTTCTGA GTGTGCTCCTCAGGAAATAGACCAAAATTCTTCATTTAAACAAGAAAGGGACCAAAACTATGAACCTAAAATGACCACAG TGGAAGTTACGGTTCCTAAAGCACCAAGCAAAGAATCAACTGAGAAGCAGTCCGAAGGATGGCAAACAATTCCAAAACCT AAAGGACATTCTACTCTAGACTACGCACGGTGGGACAATGTTGAAGATGATTCTAGTGAAGAAGAAGATGATGATGATGA TGAAGATGAAGAATCTTTGCCCCAATACCGGTTTCGTGTGAAAACAGTTGGTGTGCGTCCTGTGAAGTGAGGATATTCGT ATACTACGGTACCCTTAAATGGCTGGTTTGATACCATAGTGAATGTAAAAAGTGACATCGACAGGCAAGAATTGACTGAA TAGAATCACTTGGTTGGTTGAATCAGAGGGAAGTGCTGTATTTTATCCATTGGTTTGGTTGTCAATGTTCATGAATCATA GGGAACTACTGTATTTTATCCATTGTTTTGGTTGTCAATGTTCATGAACACTAAATCAACCTGTTTCAAGCTGCTACCGT CCGATATCCAGCCGGTTTGCATCTTGTGTGAGAAAATCTAAGTGTTCAAGTTTCGTATTGGTCCAGAAATATAGGGAGAG TTTTTATCTGATGTGGCCCATACAACATGACCAATATCAACATGAACTATATATTGAATGGGAATTTCCTGAAGCTTAGT TACTGCAGAAAAATTGATGATAAGGTTGCAGTTGTGAGAAATCTAGTCATTCAATTGTAACAATGGACCTGTGATTTGTC CTCTCCTCTTTGTATGATTCAGAAAAATTGATGATAAGGTTGCAGTTGTGAGAAATCTAGTCATTCAATTGTAACAATGG ACCTGTGATTTGTCCTCTCCTCTTTGTGCCAACGCACCACTCTAATGGTGGAAGTTAGCAGAACAAATTAGGCCTAGTTT GAGCATTAAGCAACAAGATAAAGCTTGGTTCCATTTTACACAGAAATATCTCTTTAATTTCATCTATTTTTTTCTATCAC ATCATTCATAATATCTCTCATTTCTCTCTATTTTATTTCAATTTCACTTGTGATTTTATACAAGTCCGCATGTGTTTTCA CTTGTTCAGTTTGTTTCAAACTTTCAATTAATGCCATCATTCAAACATCTATTTTCTGCTCCTCCTCTTGATTTCATTTC CTCTGATAGGTGAAACCGTGCGAGTGTAGCAGCCGTCTTTCCAATCTGCTTGCTCTAAAACCTGTGTGACAGTAAATGTA GCAATTAATATTGGCTTGAAATTATTATTGAAGTTCATAAATGCCCTCTTCATTTATAGCAGTAGTTTATGGTGATAACG ATCATTTTTCAATTTTATATCTGGGGACTCACCAGAACTTGTGAAGTCTTTAATAGTAGGGTGCCGGATCATGTGAAATG CTGCAGCTGTACCTTGTTACACATTTAATAGGAACACTTTGAATCTTCATGTATATATTCCAACTAAGCCATCAATAAAG TCTTCAAACTGTAGGCATATTTCTTTAGGCCTGTTGCTCACTAGCCTACATTTTCGCTCTGCTAGTAATGCACACTGATT TCAAGCCACTTGAGTTTGTATAGTTGCTGCAAATATGACTACTTTCTCGCTTGGGACCCACAAATTGTTCCTCATTGTGA TTTTCTTCATGGTCGTTTCTGTTGATTGGAGCCTTAGGGTGATCCCAAATCATGGTAAGTGAGAAATATAATGTTTTACT CTGCATAGCTTCATGCCTATTTCATACAATAGCCAGTGTTTAAAAGCCTGAAGAAATTGATTTTCAAGCTAGTTTAATGG TCAAATTTACTTGAAGAGTTTTGCCGTCCATAGCAGTCTTACCTTGCTTGAACAAGATTATCTTAGCGGAAGATAGTTGT GGTTTAAATAAAATATTATCTCTTGAAAAATTAGTTGTGACAGTGTTACTAGTCAAACAGGTTTTATTTATGAGGATTTT ACATGTGCATTTTCCCCTGTTTTTCAGCTAGGTTGACAAGTTTGCAAGAAGAGAAAGCAGCAATTAGAGATCAAAAGGTT TGATAGTTTAATTATTGTAAGTTCACTCATTTGTGTGTTGGTCAAGGATGGGAATAACTAATTGTTGTATGTACCTACTT GTGATTTTGTAGGAGGAAGCAAGACAAGACAATGTGGGAATGGAACTCTACCCAACCGGCTCCACTATACCAGATTGTTC TCATGCATGTGGACCGTGCTCTCCTTGCAAGAGGGTCATGGTGAGTTTCAAGTGCACGATTGCAGAGTCTTGCCCCATGG TTTACAAATGCATCTGTAAAGGAAAATACTACCATGTACCCTCCAATCGATGACCATTAATTTTGTTTTTTATTTTGTTG ATCATTGTTGTAATTCTGAAGATGATAGTGATTTGAGTTAGACAATTTTACCATTTGGAGATGCTTAGATTGATTAGAAA CACGGTTCAAAACCATGGAAGAAATTTTCATGACTCTGTTTTTTGTTGCTT
CDS sequence (LotjaGi3g1v0137700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTACTTTCTCGCTTGGGACCCACAAATTGTTCCTCATTGTGATTTTCTTCATGGTCGTTTCTGTTGATTGGAGCCT TAGGGTGATCCCAAATCATGCTAGGTTGACAAGTTTGCAAGAAGAGAAAGCAGCAATTAGAGATCAAAAGGAGGAAGCAA GACAAGACAATGTGGGAATGGAACTCTACCCAACCGGCTCCACTATACCAGATTGTTCTCATGCATGTGGACCGTGCTCT CCTTGCAAGAGGGTCATGGTGAGTTTCAAGTGCACGATTGCAGAGTCTTGCCCCATGGTTTACAAATGCATCTGTAAAGG AAAATACTACCATGTACCCTCCAATCGATGA
Protein sequence (LotjaGi3g1v0137700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTFSLGTHKLFLIVIFFMVVSVDWSLRVIPNHARLTSLQEEKAAIRDQKEEARQDNVGMELYPTGSTIPDCSHACGPCS PCKRVMVSFKCTIAESCPMVYKCICKGKYYHVPSNR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 9 | 114 | 106 | 1.1E-38 | – | |
| PANTHER | 9 | 114 | 106 | 1.1E-38 | ||
| Phobius | 12 | 30 | 19 | - | – | |
| Phobius | 31 | 116 | 86 | - | – | |
| Coils | 36 | 56 | 21 | - | – | |
| Pfam | 65 | 112 | 48 | 2.1E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Stomatal complex development | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. |
Expression pattern of LotjaGi3g1v0137700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…