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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0138400 |
| Transcript ID | LotjaGi3g1v0138400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Subtilisin-like serine protease; TAIR: AT4G00230.1 xylem serine peptidase 1; Swiss-Prot: sp|Q39547|CUCM1_CUCME Cucumisin; TrEMBL-Plants: tr|A0A151RD84|A0A151RD84_CAJCA Cucumisin; Found in the gene: LotjaGi3g1v0138400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18098268..18099985) extracted from Lotus japonicus Gifu genome v1.2.
GTTATATGAGATGCCCATAAACTTAACAAATGATGTAAAGTAAAACATTACTAACATTATGGCTAAAGAATTAAGAATAA GTAATTACATGTGCTCTAAATTGGCACCATTGAATGCAAGAATCATTAAAAAAAATCTATAATTTGTTATGTAATCCAGG CTTTGCAATCATGGTTCATTGGATCAGAATTTAGTGAAGGGTAAAATTGTTCTCTGCGAGAGCTTTTACCCAAATGAAAC TGGTCCCATTGGTTTCCTCTCAACCACCACTCAAATACCACCCGCACTGGCTTATCCCTTGCCTGGATCTTACCTCGACT TCAAGGATGCTGTCTCTATATTGAAATACATAAAATCCACAAGGTATATGTAAAATCTATAAGGTTTCTTATACAAGTTA TGCTCATTATGAATAATTTAGAGAGGCACACTAAAAGTGAATGTTTCTTGAAACAACTTGCAGGGATTCAAGCGCCACAA TATATAAGAGTGATGAGTTAGAAGATACTTCAGCCCCTGAGGTAGTCTATTTCTCATCAAGGGGTCCAAACATGATTACA CCTGAAATTCTCAAGGTACTTTTCTATGAATAAGTAAATTAAATATCTCAGTAAGGTAACATTTTCTGAAACTATGTTAT TTTTTCATCTACTTTTGTAGCCGGATTTGACTGCTCCTGGCGTAACCATCCTCGCTAGTTGGTCTCCAATATTTCCTGTT TCAAACTCTGATATTGACCACAGAGAGTTAAACTTCAATATCATGTCAGGAACCTCAATGTCTTGCCCACACGTGTCTGG TGTAGCAGGTTACATCAAATCATTTCATCCTACTTGGTCTCCTGCGGCTATTCGTTCAGCTCTAATGACAACATGTAATA TATATGATTAGTTTTAAATACTCAATTTTCGGAAATCAGACCGGTGATCCGTTCATCTAAACACATAATTAGCTAATTCT TTGTTGTTCTTTTGGGTAAAAATATAAGCTAATTCAAACAAACAATTTGTGTGGCTTGCAGCTGAACCCCTTAGTCCCTT GAATAACATAGAAGCAGAGTTGGCATATGGAGCAGGTCAAATTAGTCCTTCGAAGGCTTTGGCACCTGGTTTAGTATATG ATCTTACTGAAAGGGACTACCTGAGTTTTTTGTGTGGCCAGGGCTATAACGCAATGTATATACAACTCATCACAGGGGAT AATAGCAGCTCCTGTGCCACAAACAATGGATCGATCGCAAGGGATCTAAATTACCCTTCGTTTGCTCTTCAGGCCCCTCA CACAGATCGTAAAGTATTTGCCAGGTTCAAAAGGACAGTCACAAATGTTGGCTCTCCAAAGTCCACATATAAAGCTACAG TGACTGCTCCTAGGGGACTAGAAATCAAAGTGGAGCCAAATGTTTTGCCATTCAATTCACTTGGCCAAAAGAAAACATTT GTGCTCACTATTGATGGAGCAATAACTGAACCTATAGTGTCAGCTTCTTTAGTTTGGGACGATGGTGGATTCCAAGTGAG GAGCCCGATTGTTGTGTATGATGTAGTGGGTTTTAACTCATCCACACATGCTTCTCATTCCACATCTTTTTCTCCTAGTC TCTCTTTGCTTTTCCTATCTCTCATTTCTTTCACCCACTTATATCTTTTGGGTGTGTATGAATAAGCAGAACCAAAGGAA TTCCTTATTATCATTTAATAAAGACAACTTTAGCTGCC
CDS sequence (LotjaGi3g1v0138400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGAACCTCAATGTCTTGCCCACACGTGTCTGGTGTAGCAGGTTACATCAAATCATTTCATCCTACTTGGTCTCC TGCGGCTATTCGTTCAGCTCTAATGACAACATCTGAACCCCTTAGTCCCTTGAATAACATAGAAGCAGAGTTGGCATATG GAGCAGGTCAAATTAGTCCTTCGAAGGCTTTGGCACCTGGTTTAGTATATGATCTTACTGAAAGGGACTACCTGAGTTTT TTGTGTGGCCAGGGCTATAACGCAATGTATATACAACTCATCACAGGGGATAATAGCAGCTCCTGTGCCACAAACAATGG ATCGATCGCAAGGGATCTAAATTACCCTTCGTTTGCTCTTCAGGCCCCTCACACAGATCGTAAAGTATTTGCCAGGTTCA AAAGGACAGTCACAAATGTTGGCTCTCCAAAGTCCACATATAAAGCTACAGTGACTGCTCCTAGGGGACTAGAAATCAAA GTGGAGCCAAATGTTTTGCCATTCAATTCACTTGGCCAAAAGAAAACATTTGTGCTCACTATTGATGGAGCAATAACTGA ACCTATAGTGTCAGCTTCTTTAGTTTGGGACGATGGTGGATTCCAAGTGAGGAGCCCGATTGTTGTGTATGATGTAGTGG GTTTTAACTCATCCACACATGCTTCTCATTCCACATCTTTTTCTCCTAGTCTCTCTTTGCTTTTCCTATCTCTCATTTCT TTCACCCACTTATATCTTTTGGGTGTGTATGAATAA
Protein sequence (LotjaGi3g1v0138400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGTSMSCPHVSGVAGYIKSFHPTWSPAAIRSALMTTSEPLSPLNNIEAELAYGAGQISPSKALAPGLVYDLTERDYLSF LCGQGYNAMYIQLITGDNSSSCATNNGSIARDLNYPSFALQAPHTDRKVFARFKRTVTNVGSPKSTYKATVTAPRGLEIK VEPNVLPFNSLGQKKTFVLTIDGAITEPIVSASLVWDDGGFQVRSPIVVYDVVGFNSSTHASHSTSFSPSLSLLFLSLIS FTHLYLLGVYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 230 | 230 | - | – | |
| PANTHER | 1 | 210 | 210 | 1.9E-83 | – | |
| PANTHER | 1 | 210 | 210 | 1.9E-83 | – | |
| Gene3D | 1 | 78 | 78 | 4.8E-33 | ||
| ProSiteProfiles | 1 | 64 | 64 | 14.468 | – | |
| SUPERFAMILY | 1 | 68 | 68 | 1.7E-18 | ||
| Pfam | 1 | 56 | 56 | 9.3E-13 | ||
| ProSitePatterns | 3 | 13 | 11 | - | ||
| Gene3D | 81 | 213 | 133 | 2.4E-40 | – | |
| Pfam | 112 | 209 | 98 | 1.1E-26 | ||
| Phobius | 231 | 250 | 20 | - | – | |
| Phobius | 251 | 251 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi3g1v0138400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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