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LotjaGi3g1v0145000.1

Overview

Field Value
Gene ID LotjaGi3g1v0145000
Transcript ID LotjaGi3g1v0145000.1
Lotus japonicus genome version Gifu v1.2
Description Nicotianamine synthase; TAIR: AT5G56080.1 nicotianamine synthase 2; Swiss-Prot: sp|Q9XGI7|NAS_SOLLC Nicotianamine synthase; TrEMBL-Plants: tr|A0A072V9C6|A0A072V9C6_MEDTR Nicotianamine synthase; Found in the gene: LotjaGi3g1v0145000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:19304916..19306615) extracted from Lotus japonicus Gifu genome v1.2.

ACAAGCCAAATAGCAAACACCTGTATACCAATTTACCTTACTTTTCACTCAAGCTTCTCAAAAACCACTTGAACCCAATG GCTTCTTTCCAAAACTTCAACTTCGAAGCCCAAATTCCATCAGAGCTCCTGATATCTCAGATCATGCAACTTCACGCAGC AATCTCCAAGCTTGAATCTCTCAAGCCTTCTAAGCAAGTCAACACCCTCTTCACTCACCTAGTGAAACTCTGCACCCTCC CTTCATCCATTGACATTGAAGCCTTGCCCCATCAAGTACAAATCATGCGTGAGAGCCTCATTGGCCTCTGTGGCCGCGCC GAAGGGCTTCTAGAACTTGAATTCTCAACATTCATTAACAACACACCAAACCCTTTGAACAATTTAACCCTCTTCCCTTA CTATGGGAACTATGTCAAACTAGCAAACTTGGAGAACAAAATCCTCAAAGATAATGGGGTTATGCATGCAAAGAAGGTAG CATTTATTGGGTCTGGTCCAATGCCACTCACTTCAATCATCATGGCAACTCATCACATGGAATCAACTCACTTTGATAAC TTTGACATTGATGAGAAGGCGAACGAGGCGGCTCGCAAGATCGTTGCTTCGGACGGGGTGCTTGAGAAGAGGATGAAGTT TGAGACACGAGACATCATGGACTTGAGGGAGAGATTGGGGGAATATGATTGCATCTTTTTGGCTGCACTTGTGGGTATGA GCAGGGTAGAGAAAGTGAAGATCATGGGACACATTAGAAAGTATATGAAGGAGGGAGGTGTTTTGCTTGTGAGAAGTGCA AAAGGGGCTAGAGCTTTCTTGTACCCGGTTATTAAGGAGCATGATATGGTGGATTTTGAGGTGCTTACCATCTTTCATCC CACAAACGATGTGATCAACTCAGTTGTCCTTCTTCGCAAGCCTGAAGCTTAGTGTGGTATTTCTACTTGAAGTTCCCTCC TATCCACTGCGAATTCAGCTTTAGTATAGTTTTCCACCGTGTATCCAAATATGGATTTAGTATTGTTGTGTGTCATGTAA TGCTTTCTTTTTATGTCATCCTTTATATGATGACTTAAATAATTGTACCAGTAACAATATCAAAGATGGTAAAAATAAAT GCAGTGTTTCCAAAAGGATTGCATAGGAGTCAAAAGCAAGGTTGACAAAATCGCGAGTCAACTCGTAGAATCGTACGATT CTACGATGTTACAAGGCCCCTACATGTTGAATCGGTAGCAGAATCGCTATCGAGTAGAATCGGGTGGAATCGCCGTTGTT ACAGGTAGAATCGCAGAATCATGGGTCGTCGCCGATTCTACTTTCTGGATTATGGAGAAAGATTTTGATGAAAACAATGA AGACTTGGATGTGGACAACTCGGATTTTAAAACTCTAAATGAAAATGAGAATGAGAGTTTGGATCTAGAGATTCTAGAGC AATAGAACCATCGTGAATGTGAAGATGAAGAAGAAAATGAAGATGAAGAAAATGAAGATGAAGTTGAATGGAATGATGAT TATATGGATGTTAATTTGAATGAATTGCTTGGAATACATTAGTGCTTTTAAAGAGATTTTTATTTTATGTTAAGGTAGTT TGTATGCATATATATATATATGAATTTATATGCATATAATATATTTATATATTTGTGGAATCGTAGCGTCCTTGCTACGT TTATACGAGTTTACGATTCT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0145000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCTTTCCAAAACTTCAACTTCGAAGCCCAAATTCCATCAGAGCTCCTGATATCTCAGATCATGCAACTTCACGC AGCAATCTCCAAGCTTGAATCTCTCAAGCCTTCTAAGCAAGTCAACACCCTCTTCACTCACCTAGTGAAACTCTGCACCC TCCCTTCATCCATTGACATTGAAGCCTTGCCCCATCAAGTACAAATCATGCGTGAGAGCCTCATTGGCCTCTGTGGCCGC GCCGAAGGGCTTCTAGAACTTGAATTCTCAACATTCATTAACAACACACCAAACCCTTTGAACAATTTAACCCTCTTCCC TTACTATGGGAACTATGTCAAACTAGCAAACTTGGAGAACAAAATCCTCAAAGATAATGGGGTTATGCATGCAAAGAAGG TAGCATTTATTGGGTCTGGTCCAATGCCACTCACTTCAATCATCATGGCAACTCATCACATGGAATCAACTCACTTTGAT AACTTTGACATTGATGAGAAGGCGAACGAGGCGGCTCGCAAGATCGTTGCTTCGGACGGGGTGCTTGAGAAGAGGATGAA GTTTGAGACACGAGACATCATGGACTTGAGGGAGAGATTGGGGGAATATGATTGCATCTTTTTGGCTGCACTTGTGGGTA TGAGCAGGGTAGAGAAAGTGAAGATCATGGGACACATTAGAAAGTATATGAAGGAGGGAGGTGTTTTGCTTGTGAGAAGT GCAAAAGGGGCTAGAGCTTTCTTGTACCCGGTTATTAAGGAGCATGATATGGTGGATTTTGAGGTGCTTACCATCTTTCA TCCCACAAACGATGTGATCAACTCAGTTGTCCTTCTTCGCAAGCCTGAAGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0145000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASFQNFNFEAQIPSELLISQIMQLHAAISKLESLKPSKQVNTLFTHLVKLCTLPSSIDIEALPHQVQIMRESLIGLCGR AEGLLELEFSTFINNTPNPLNNLTLFPYYGNYVKLANLENKILKDNGVMHAKKVAFIGSGPMPLTSIIMATHHMESTHFD NFDIDEKANEAARKIVASDGVLEKRMKFETRDIMDLRERLGEYDCIFLAALVGMSRVEKVKIMGHIRKYMKEGGVLLVRS AKGARAFLYPVIKEHDMVDFEVLTIFHPTNDVINSVVLLRKPEA
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32266:SF11
1 282 282 7.2E-160 –
PANTHER
PTHR32266
1 282 282 7.2E-160
IPR004298
ProSiteProfiles
PS51142
10 284 275 45.759
IPR004298
Pfam
PF03059
15 282 268 4.9E-101
IPR004298
Gene3D
G3DSA:3.40.50.150
18 283 266 6.1E-63 –
SUPERFAMILY
SSF53335
130 241 112 4.77E-12
IPR029063
CDD
cd02440
162 238 77 0.00473345 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030410
Molecular function Nicotianamine synthase activity Catalysis of the reaction: 3 S-adenosyl-L-methionine(1+) = 3 S-methyl-5'-thioadenosine + 3 H(+) + nicotianamine.
Subterm of
GO:0030418
Biological process Nicotianamine biosynthetic process The chemical reactions and pathways resulting in the formation of nicotianamine, 2(S),3'2(S),3''(S)-N-(N-(3-amino-3-carboxypropyl)-3-amino-3-carboxypropyl)-azetidine-2-carboxylic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0145000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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