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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0145800 |
| Transcript ID | LotjaGi3g1v0145800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60 kDa chaperonin; TAIR: AT1G55490.1 chaperonin 60 beta; Swiss-Prot: sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit beta, chloroplastic; TrEMBL-Plants: tr|A0A1J7FWW4|A0A1J7FWW4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0145800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:19402055..19407679) extracted from Lotus japonicus Gifu genome v1.2.
TAACAAGTTGTGTTGATTCAGATACCACGAAGTAAGAACAGTGCTGCGAATATGTTGGCTCGCCAAGCCGCGAGGGAGGG TACGCTGCGTCGTGTCTGGAGGTTACCACCTTCAAGCCTGATCTCATCCCCGTTGCAGGATGCATTATATTAGTTGTTTT GCTTTGTTTTCATTTCCTATGTAACCAAAAGAAAAGCTCCACACCTATGACATCATTTCTCCTTATTTGAATTAAAATTA TTTTTCCTATCTCCAAAAAAAACTCATAAATTAAAATTTTTTTTGAGACATGTTTAGATTTGACCCAATATATAAGTAGA TGAAATGGAAAATATTTGACACTATAAAAAAAGTAAAAAGTTCTAGAGCATTCTAAAGTAAGACAAATCCAATCCAACGG CTGAGATGAAACAGAAGTTTCAAGATGGCATATCCCTCGTCCCCTCGTTCATTTCTCACAATAAAAACCTAATCTCCACA CTCACTCTTTCAACTACTTCACCTACAAAACAACACAGCACCACTTCACTTCATTTCATTTCATTTCATTATCCATAACC CAACCCTCTTAAACCCTATCCCCAACCATGGCGTCAACCGCTGCCGGCTCCTGCAACCTCTCCTCCTCCGCCTCCATCTC CGCCTTCCCCTTCGCCGGCGGCGCGAGACGGAGCAGCAGCAGCAGCAGCAACAGCGTTGTTTTATCCAGGAAGACCCGCA ACCTCAAGGTCTCCGCCATGGCTAAGGAGTTGCATTTCAACAAGGATGGTTCCGCTATCAAGAGGCTTCAGGTACAGTGA GACCGTGTGAGTAGATTGTTGACATAAACGAGTGATTTGTTTCAGGGTTTGTGATGTTTTGTTTGTTTGTGTGACAGGCT GGCGTGAACAAGCTTGCGGATCTGGTTGGTGTTACTCTTGGTCCTAAAGGGAGGAATGTTGTTCTTGAGAGCAAGTATGG TTCACCTAAAATTGTCAATGATGGTGTTACTGTTGCTAAAGAGGTGTGAATTTCAATCTCATAATATACTATATATATAT ATGTATATATTCAAGTTGTTTGGATGAGTTTAGGTTCTGGGAAATTTTATTAACTCTTTGTTTTGTTCAATTCAAGGAGG GTAGCGGAAGAGAATTCTAGAGCTTGTTTGATCACAGTTTCAGTTTTTAAAACTAAAATACCGCGACTAAAATTATAATT TTTTTAATGTTGGAAAACATCTAATTAGTTTTTAAAAATTGCAGTTAAACAAGCCCTTAGTTGTTTTAAAATTTGGTTAA AGGAGGGGTGGGATTTTCAAACATTATTGTGTTTATTGTTTGCTTTGTTGTGGTTAAGGATTATTCATTTAAGCTAAAAT TATGGACTGAACAAGATATGTTTTTTAAAAGTTCTTTTGTCACCCTTCAATTAGATACTATGTTAAGTTTCATGTTACTG TGAATTAATTATGTTATGTGGGTGTTTATTCTGATGCTTTGTCGCATTTGGCTTGAAAAGGTTGAGTTGGAGGATCCTGT TGAGAATATCGGTGCCAAGTTGGTGAGACAGGCAGCTGCCAAGACTAACGATTTGGCTGGTGATGGAACCACAACCTCGG TTGTCCTAGCTCAGGGTCTTATTGCGGAAGGTGTCAAGGTTGGTTTTATTCTTTCCTTAGATTTATATAACAAGTAACTA ATACTTGGTTGGCTCTGTTTCGTTTGTTACATTACAAGGTCCTCATTTTTAGCATAATTTTGCAGGTTGTTGCAGCGGGT GCCAACCCTGTTCTTATTACCCGTGGCATTGAGAAGACAACGAAAGCTCTAGTAGCTGAGCTTAAAAAGATGTCGAAAGA GGTGAAGTGTTTCTTCTCTTTTGAGTGTCTGTGTTTAAGCATGTTTATTTAGTATTACTTGAATGCTCCCCACTCTTTGC TTATTTTTATGTTTTATTGCACAAATATTGTAAACGTATTTCTGCTTAGACTGAGCGAGCTGCGGTTACATGGGTTGCAG GTTGAAGATAGTGAGTTGGCGGATGTGGCAGCAGTCAGTGCTGGGAACAATATTGAAGTAGGAAGTATGATAGCAGAAGC TTTGAGCAAGGTTGGTAGAAAGGGTGTTGTGACACTTGAGGAGGGAAAGAGTGCTGAAAATGCTCTATATGTTGTTGAGG GGATGCAATTTGACCGTGGTTATATTTCACCATACTTTGTTACTGACAGTGAGAAAATGTCAGTTGAGTTTGAGAACTGT AAGGTAAGACATCTTTTTTCTGTAATGTTTACTATATAACTTTCTTGTGTATTTACTTAAAATCTTATGTGGTGTTTTTG TTCTGCAGTTGCTTTTAGTTGATAAAAAGATAACCAACGCAAGGGATCTTATTAACATACTTGAGGATGCAATTAGAAAT GGTTTCCCTATTTTGATCATTGCGGAGGATATTGAACAAGAAGCTTTAGCGACCCTGGTGGTGAACAAACTTAGAGGATC ACTAAAGATTGCAGCACTTAAGGCCCCTGGGTTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATTTTGACAG GAGGTTTATAAATTTTGAAGATTGATGTCTATGTTCTGTTTGATTTGGAAGTGTAAAGTTGTTTCTTAACCTTTTTGTGT ACAGCTGTTTTTAAAATGGTGTTTTACCAATTGGCTTACAGGTACTGTGATCAGAGAAGAGGTTGGTCTTACTTTAGACA AAGCTGGGAAAGAGGTTCTGGGTGAGGCCTCCAAGGTGGTGCTTACCAAGGATTCAACCACAATTGTTGGTGATGGAAGT ACCCAAGAAGCTGTGAACAAAAGAGTTGCACAAATCAAGAACCAGATTGAGGTTTTCCTCTCTCTATCACTCTCTCTCTC CCCCCTCCTGGCAAAAATGTTTGTTTATACTGATGGCATGTTCCTTGGAGATGTTGGACTGAGAGAATGAGTAATGATAT ACACTCTAGAATGAAGAAACAATTCTGAGCTTAGACTGAATGATATGAAAAACACGTATAGATAGATGGAATCAGTTACT AGTGAGTGTGTTCACACATGCACATGGTCTCACATTGGTAGGAACTCTCCAGATGGAAGAGTATGGGGGATGTTTTGATA TTTATCATTCCTCAGGCATTAAATTAAATATGTTTACATTCTATGTAGGCTGCAGAACAAGACTATGAAAAGGAAAAGCT CAGTGAAAGAATTGCAAAACTGTCTGGTGGTGTCGCCGTGATACAGGTAAAAATATACTCACTGAAATATGATATTATAT ATGGTGTAATTTTGCCAAACATTATTTGGTGTAATTTTGTATTCCATATGTATGTAGGTTGGAGCACAAACTGAGACAGA ACTCAAAGAAAAGAAATTGAGAGTTGAAGATGCTCTTAACGCCACAAAGGTATATTTTTTTTCTTTCCCCAAATGCTCAT GAGTTTTTATCTATTTATTTGTTTCTATAAGCAAACATTTTGTTGACTTTCAGGCAGCTGTTGAGGAAGGTATTGTAGTA GGTGGTGGGTGTACTCTGCTAAGACTTGCGTCAAAGGTGGATGCAATCAAGGCTACCCTAGATAACGATGAAGAGAAAGT GAGTCATATATTTGATATAGCAAGAACTCAAGTTTCTTGAACATGGACATGTTTTTTGTTTTGGGTGAATATTTATTGCT TTTTGACTCAGATTCTGACCTTAGAACTTACAATGACTGGTGCAGGTTGGAGCAGATATTGTTAAAAGAGCTCTTAGTTA CCCTCTAAAATTAATTGCTAAGAATGCTGGTGTAAATGGCAGTGTTGTGAGTGAGAAGGTATGAAGATTTGCTTAATTTG GATGTTCTCAGTACTCTTTCATTCTGCATGTGATGATGTGACATTTTTTGGACAGGTTCTTTCTAGTGACAATTTTAGAT ATGGATATAATGCTGCCACTGGTAAATATGAAGATTTAATGGCTGCTGGTATCATTGATCCAACAAAGGTGCTCTATCAA TATAGCTTTGCATAGTCTTTTTAATTTACCTGCATGTGATATTGCATATCTCTAGCAAAGGTTACATAATCAGGAGTGAA GATGACATGATATTCAATACTTGCATATGGATGTCTAAAGAATGTTTTGACTACTTTTGATTTTTGTACTCAACATGAGT TTCTTCATACTTGAATACTACCCCAAAATAATAACTACATACAGAGGTAATATATTTAAGGAGAGAAACAATACCTGAAC TATTTTATTTTCTTTACTTTCCTGTCTATGCATTGATGTGTAATACTTACATGATATAACTAAAATATTAAAAGGCTTTT CTGAAGAGAATCAACTCAGCATGCTTCTGCTACACTACACTATGATAGTTGTGCTAGAATTGAAATTTTGATTACTCTAT CATCCTCTTTTTCTACAGGTGGTTAGATGTTGTCTGGAACATGCATCCTCTGTGGCCAAAACCTTCTTAATGTCAGATTG TGTAGTTGTTGAGATTAAGGAACCAGAGCCTGTAGTTGCTGGCAACCCTATGGACAACTCAGGTATGTAGTTTAAATGAG GCATTTGAGGCTGTAAGATTTTTTATGTTTCTATTGATTTATCAATACTTTAATGATATCTAGAACTTTAAGGTTCTTTC CTATTATTTTGTGTATCCTTGAATTTCAAAGTGTATGATAATGAGATTGAAATTATTCTTGGGGTGAAATGATCTTTAGT TCTTTCGTTCTTCAAATGTAGTCTTCTGACTATGTGTTACTTTTCTGTCAGGATATGGGATTTAAGGCAATGACTGCTTC AGTTAGAACAAGATTTTCCCCATTCCTTTGATGAAGAACATATGATTTGGCAGCTATTTTATTGGTAGCAGCAAATCCAA ATTAAGGCGGATGTAGTGTGGTGAACTAGATAGAGTGACGGATTTTTGTTTAATAATAATGAAATTCTTTTTGCTAATTA CATCATCCATAAATCTATCATAGCACGATTTTTGTTTTGTACTTGTTATTTTTCGCTGGAAGAAAATATTCAGTTCCTGC TCCTTTACGTTGTGCACTCAAAGTGTTAATTGGATAACAATTGTTACACAATTCCCTTCTAGTTCTGTGATAATAATTGT GATCTTAATAGGAATAATGGTTAAAGTTATGACAACTCAGACATAGGCGTGTTTAATTGTTGGGTTCAGCTGGGAAAGTT CAATCTGTTAAAAACTGAATAATAGCATACATAGCATACATTACTCGCAACTGAATGGCTAATCAGATTATAATATTAGA GGTTGCATCCATGAACCATAATAACTTCATAGACCCCTTTCTTATGCTTATCTTCAAGCTTCAATAACTTATGATAAGTG CTTCTGACCACAAGTGTTTAATCTAGCTGTTTTTTCAGACACACTCTAAGGCAGGGATACCTAGTTAGCTGGTAAACAAA AAGTGAGCAATTGAATGCCCTATTTATCATGAACTTCTGCAGTCTGCACCTCCTCCACGGCTGCACCTTTCTTCAATCTA ACCAATGTATCTCCCTTCATGGTCTCATGGTGTGCATAGACTAGGTTTTGTCCATTACACTCATCCATATCTTGATTGCC TATTACACCCATCCATGTCTTTGCA
CDS sequence (LotjaGi3g1v0145800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCAACCGCTGCCGGCTCCTGCAACCTCTCCTCCTCCGCCTCCATCTCCGCCTTCCCCTTCGCCGGCGGCGCGAG ACGGAGCAGCAGCAGCAGCAGCAACAGCGTTGTTTTATCCAGGAAGACCCGCAACCTCAAGGTCTCCGCCATGGCTAAGG AGTTGCATTTCAACAAGGATGGTTCCGCTATCAAGAGGCTTCAGGCTGGCGTGAACAAGCTTGCGGATCTGGTTGGTGTT ACTCTTGGTCCTAAAGGGAGGAATGTTGTTCTTGAGAGCAAGTATGGTTCACCTAAAATTGTCAATGATGGTGTTACTGT TGCTAAAGAGGTTGAGTTGGAGGATCCTGTTGAGAATATCGGTGCCAAGTTGGTGAGACAGGCAGCTGCCAAGACTAACG ATTTGGCTGGTGATGGAACCACAACCTCGGTTGTCCTAGCTCAGGGTCTTATTGCGGAAGGTGTCAAGGTTGTTGCAGCG GGTGCCAACCCTGTTCTTATTACCCGTGGCATTGAGAAGACAACGAAAGCTCTAGTAGCTGAGCTTAAAAAGATGTCGAA AGAGGTTGAAGATAGTGAGTTGGCGGATGTGGCAGCAGTCAGTGCTGGGAACAATATTGAAGTAGGAAGTATGATAGCAG AAGCTTTGAGCAAGGTTGGTAGAAAGGGTGTTGTGACACTTGAGGAGGGAAAGAGTGCTGAAAATGCTCTATATGTTGTT GAGGGGATGCAATTTGACCGTGGTTATATTTCACCATACTTTGTTACTGACAGTGAGAAAATGTCAGTTGAGTTTGAGAA CTGTAAGTTGCTTTTAGTTGATAAAAAGATAACCAACGCAAGGGATCTTATTAACATACTTGAGGATGCAATTAGAAATG GTTTCCCTATTTTGATCATTGCGGAGGATATTGAACAAGAAGCTTTAGCGACCCTGGTGGTGAACAAACTTAGAGGATCA CTAAAGATTGCAGCACTTAAGGCCCCTGGGTTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATTTTGACAGG AGGTACTGTGATCAGAGAAGAGGTTGGTCTTACTTTAGACAAAGCTGGGAAAGAGGTTCTGGGTGAGGCCTCCAAGGTGG TGCTTACCAAGGATTCAACCACAATTGTTGGTGATGGAAGTACCCAAGAAGCTGTGAACAAAAGAGTTGCACAAATCAAG AACCAGATTGAGGCTGCAGAACAAGACTATGAAAAGGAAAAGCTCAGTGAAAGAATTGCAAAACTGTCTGGTGGTGTCGC CGTGATACAGGTTGGAGCACAAACTGAGACAGAACTCAAAGAAAAGAAATTGAGAGTTGAAGATGCTCTTAACGCCACAA AGGCAGCTGTTGAGGAAGGTATTGTAGTAGGTGGTGGGTGTACTCTGCTAAGACTTGCGTCAAAGGTGGATGCAATCAAG GCTACCCTAGATAACGATGAAGAGAAAGTTGGAGCAGATATTGTTAAAAGAGCTCTTAGTTACCCTCTAAAATTAATTGC TAAGAATGCTGGTGTAAATGGCAGTGTTGTGAGTGAGAAGGTTCTTTCTAGTGACAATTTTAGATATGGATATAATGCTG CCACTGGTAAATATGAAGATTTAATGGCTGCTGGTATCATTGATCCAACAAAGGTGGTTAGATGTTGTCTGGAACATGCA TCCTCTGTGGCCAAAACCTTCTTAATGTCAGATTGTGTAGTTGTTGAGATTAAGGAACCAGAGCCTGTAGTTGCTGGCAA CCCTATGGACAACTCAGGATATGGGATTTAA
Protein sequence (LotjaGi3g1v0145800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTAAGSCNLSSSASISAFPFAGGARRSSSSSSNSVVLSRKTRNLKVSAMAKELHFNKDGSAIKRLQAGVNKLADLVGV TLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAA GANPVLITRGIEKTTKALVAELKKMSKEVEDSELADVAAVSAGNNIEVGSMIAEALSKVGRKGVVTLEEGKSAENALYVV EGMQFDRGYISPYFVTDSEKMSVEFENCKLLLVDKKITNARDLINILEDAIRNGFPILIIAEDIEQEALATLVVNKLRGS LKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLTLDKAGKEVLGEASKVVLTKDSTTIVGDGSTQEAVNKRVAQIK NQIEAAEQDYEKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIK ATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNFRYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHA SSVAKTFLMSDCVVVEIKEPEPVVAGNPMDNSGYGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
| PANTHER | 42 | 587 | 546 | 0.0 | – | |
| PANTHER | 42 | 587 | 546 | 0.0 | – | |
| Hamap | 51 | 596 | 546 | 36.558 | ||
| TIGRFAM | 52 | 579 | 528 | 7.4E-223 | ||
| CDD | 53 | 576 | 524 | 0.0 | ||
| SUPERFAMILY | 60 | 574 | 515 | 6.72E-72 | ||
| Gene3D | 62 | 574 | 513 | 1.8E-214 | ||
| Pfam | 74 | 577 | 504 | 5.3E-103 | ||
| PRINTS | 78 | 104 | 27 | 7.4E-67 | ||
| PRINTS | 134 | 161 | 28 | 7.4E-67 | ||
| Gene3D | 187 | 460 | 274 | 1.8E-214 | ||
| SUPERFAMILY | 191 | 257 | 67 | 8.7E-17 | ||
| SUPERFAMILY | 235 | 426 | 192 | 8.72E-74 | ||
| Gene3D | 242 | 422 | 181 | 1.8E-214 | ||
| PRINTS | 318 | 341 | 24 | 7.4E-67 | ||
| Coils | 389 | 416 | 28 | - | – | |
| PRINTS | 400 | 425 | 26 | 7.4E-67 | ||
| PRINTS | 448 | 469 | 22 | 7.4E-67 | ||
| ProSitePatterns | 455 | 466 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
| Biological process | Protein refolding | The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. |
Expression pattern of LotjaGi3g1v0145800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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