Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0145800 |
Transcript ID | LotjaGi3g1v0145800.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 60 kDa chaperonin; TAIR: AT1G55490.1 chaperonin 60 beta; Swiss-Prot: sp|P08927|RUBB_PEA RuBisCO large subunit-binding protein subunit beta, chloroplastic; TrEMBL-Plants: tr|A0A1J7FWW4|A0A1J7FWW4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0145800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:19402608..19406847) extracted from Lotus japonicus Gifu genome v1.2.
CATAACCCAACCCTCTTAAACCCTATCCCCAACCATGGCGTCAACCGCTGCCGGCTCCTGCAACCTCTCCTCCTCCGCCT CCATCTCCGCCTTCCCCTTCGCCGGCGGCGCGAGACGGAGCAGCAGCAGCAGCAGCAACAGCGTTGTTTTATCCAGGAAG ACCCGCAACCTCAAGGTCTCCGCCATGGCTAAGGAGTTGCATTTCAACAAGGATGGTTCCGCTATCAAGAGGCTTCAGGT ACAGTGAGACCGTGTGAGTAGATTGTTGACATAAACGAGTGATTTGTTTCAGGGTTTGTGATGTTTTGTTTGTTTGTGTG ACAGGCTGGCGTGAACAAGCTTGCGGATCTGGTTGGTGTTACTCTTGGTCCTAAAGGGAGGAATGTTGTTCTTGAGAGCA AGTATGGTTCACCTAAAATTGTCAATGATGGTGTTACTGTTGCTAAAGAGGTGTGAATTTCAATCTCATAATATACTATA TATATATATGTATATATTCAAGTTGTTTGGATGAGTTTAGGTTCTGGGAAATTTTATTAACTCTTTGTTTTGTTCAATTC AAGGAGGGTAGCGGAAGAGAATTCTAGAGCTTGTTTGATCACAGTTTCAGTTTTTAAAACTAAAATACCGCGACTAAAAT TATAATTTTTTTAATGTTGGAAAACATCTAATTAGTTTTTAAAAATTGCAGTTAAACAAGCCCTTAGTTGTTTTAAAATT TGGTTAAAGGAGGGGTGGGATTTTCAAACATTATTGTGTTTATTGTTTGCTTTGTTGTGGTTAAGGATTATTCATTTAAG CTAAAATTATGGACTGAACAAGATATGTTTTTTAAAAGTTCTTTTGTCACCCTTCAATTAGATACTATGTTAAGTTTCAT GTTACTGTGAATTAATTATGTTATGTGGGTGTTTATTCTGATGCTTTGTCGCATTTGGCTTGAAAAGGTTGAGTTGGAGG ATCCTGTTGAGAATATCGGTGCCAAGTTGGTGAGACAGGCAGCTGCCAAGACTAACGATTTGGCTGGTGATGGAACCACA ACCTCGGTTGTCCTAGCTCAGGGTCTTATTGCGGAAGGTGTCAAGGTTGGTTTTATTCTTTCCTTAGATTTATATAACAA GTAACTAATACTTGGTTGGCTCTGTTTCGTTTGTTACATTACAAGGTCCTCATTTTTAGCATAATTTTGCAGGTTGTTGC AGCGGGTGCCAACCCTGTTCTTATTACCCGTGGCATTGAGAAGACAACGAAAGCTCTAGTAGCTGAGCTTAAAAAGATGT CGAAAGAGGTGAAGTGTTTCTTCTCTTTTGAGTGTCTGTGTTTAAGCATGTTTATTTAGTATTACTTGAATGCTCCCCAC TCTTTGCTTATTTTTATGTTTTATTGCACAAATATTGTAAACGTATTTCTGCTTAGACTGAGCGAGCTGCGGTTACATGG GTTGCAGGTTGAAGATAGTGAGTTGGCGGATGTGGCAGCAGTCAGTGCTGGGAACAATATTGAAGTAGGAAGTATGATAG CAGAAGCTTTGAGCAAGGTTGGTAGAAAGGGTGTTGTGACACTTGAGGAGGGAAAGAGTGCTGAAAATGCTCTATATGTT GTTGAGGGGATGCAATTTGACCGTGGTTATATTTCACCATACTTTGTTACTGACAGTGAGAAAATGTCAGTTGAGTTTGA GAACTGTAAGGTAAGACATCTTTTTTCTGTAATGTTTACTATATAACTTTCTTGTGTATTTACTTAAAATCTTATGTGGT GTTTTTGTTCTGCAGTTGCTTTTAGTTGATAAAAAGATAACCAACGCAAGGGATCTTATTAACATACTTGAGGATGCAAT TAGAAATGGTTTCCCTATTTTGATCATTGCGGAGGATATTGAACAAGAAGCTTTAGCGACCCTGGTGGTGAACAAACTTA GAGGATCACTAAAGATTGCAGCACTTAAGGCCCCTGGGTTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATT TTGACAGGAGGTTTATAAATTTTGAAGATTGATGTCTATGTTCTGTTTGATTTGGAAGTGTAAAGTTGTTTCTTAACCTT TTTGTGTACAGCTGTTTTTAAAATGGTGTTTTACCAATTGGCTTACAGGTACTGTGATCAGAGAAGAGGTTGGTCTTACT TTAGACAAAGCTGGGAAAGAGGTTCTGGGTGAGGCCTCCAAGGTGGTGCTTACCAAGGATTCAACCACAATTGTTGGTGA TGGAAGTACCCAAGAAGCTGTGAACAAAAGAGTTGCACAAATCAAGAACCAGATTGAGGTTTTCCTCTCTCTATCACTCT CTCTCTCCCCCCTCCTGGCAAAAATGTTTGTTTATACTGATGGCATGTTCCTTGGAGATGTTGGACTGAGAGAATGAGTA ATGATATACACTCTAGAATGAAGAAACAATTCTGAGCTTAGACTGAATGATATGAAAAACACGTATAGATAGATGGAATC AGTTACTAGTGAGTGTGTTCACACATGCACATGGTCTCACATTGGTAGGAACTCTCCAGATGGAAGAGTATGGGGGATGT TTTGATATTTATCATTCCTCAGGCATTAAATTAAATATGTTTACATTCTATGTAGGCTGCAGAACAAGACTATGAAAAGG AAAAGCTCAGTGAAAGAATTGCAAAACTGTCTGGTGGTGTCGCCGTGATACAGGTAAAAATATACTCACTGAAATATGAT ATTATATATGGTGTAATTTTGCCAAACATTATTTGGTGTAATTTTGTATTCCATATGTATGTAGGTTGGAGCACAAACTG AGACAGAACTCAAAGAAAAGAAATTGAGAGTTGAAGATGCTCTTAACGCCACAAAGGTATATTTTTTTTCTTTCCCCAAA TGCTCATGAGTTTTTATCTATTTATTTGTTTCTATAAGCAAACATTTTGTTGACTTTCAGGCAGCTGTTGAGGAAGGTAT TGTAGTAGGTGGTGGGTGTACTCTGCTAAGACTTGCGTCAAAGGTGGATGCAATCAAGGCTACCCTAGATAACGATGAAG AGAAAGTGAGTCATATATTTGATATAGCAAGAACTCAAGTTTCTTGAACATGGACATGTTTTTTGTTTTGGGTGAATATT TATTGCTTTTTGACTCAGATTCTGACCTTAGAACTTACAATGACTGGTGCAGGTTGGAGCAGATATTGTTAAAAGAGCTC TTAGTTACCCTCTAAAATTAATTGCTAAGAATGCTGGTGTAAATGGCAGTGTTGTGAGTGAGAAGGTATGAAGATTTGCT TAATTTGGATGTTCTCAGTACTCTTTCATTCTGCATGTGATGATGTGACATTTTTTGGACAGGTTCTTTCTAGTGACAAT TTTAGATATGGATATAATGCTGCCACTGGTAAATATGAAGATTTAATGGCTGCTGGTATCATTGATCCAACAAAGGTGCT CTATCAATATAGCTTTGCATAGTCTTTTTAATTTACCTGCATGTGATATTGCATATCTCTAGCAAAGGTTACATAATCAG GAGTGAAGATGACATGATATTCAATACTTGCATATGGATGTCTAAAGAATGTTTTGACTACTTTTGATTTTTGTACTCAA CATGAGTTTCTTCATACTTGAATACTACCCCAAAATAATAACTACATACAGAGGTAATATATTTAAGGAGAGAAACAATA CCTGAACTATTTTATTTTCTTTACTTTCCTGTCTATGCATTGATGTGTAATACTTACATGATATAACTAAAATATTAAAA GGCTTTTCTGAAGAGAATCAACTCAGCATGCTTCTGCTACACTACACTATGATAGTTGTGCTAGAATTGAAATTTTGATT ACTCTATCATCCTCTTTTTCTACAGGTGGTTAGATGTTGTCTGGAACATGCATCCTCTGTGGCCAAAACCTTCTTAATGT CAGATTGTGTAGTTGTTGAGATTAAGGAACCAGAGCCTGTAGTTGCTGGCAACCCTATGGACAACTCAGGTATGTAGTTT AAATGAGGCATTTGAGGCTGTAAGATTTTTTATGTTTCTATTGATTTATCAATACTTTAATGATATCTAGAACTTTAAGG TTCTTTCCTATTATTTTGTGTATCCTTGAATTTCAAAGTGTATGATAATGAGATTGAAATTATTCTTGGGGTGAAATGAT CTTTAGTTCTTTCGTTCTTCAAATGTAGTCTTCTGACTATGTGTTACTTTTCTGTCAGGATATGGGATTTAAGGCAATGA
CDS sequence (LotjaGi3g1v0145800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCAACCGCTGCCGGCTCCTGCAACCTCTCCTCCTCCGCCTCCATCTCCGCCTTCCCCTTCGCCGGCGGCGCGAG ACGGAGCAGCAGCAGCAGCAGCAACAGCGTTGTTTTATCCAGGAAGACCCGCAACCTCAAGGTCTCCGCCATGGCTAAGG AGTTGCATTTCAACAAGGATGGTTCCGCTATCAAGAGGCTTCAGGCTGGCGTGAACAAGCTTGCGGATCTGGTTGGTGTT ACTCTTGGTCCTAAAGGGAGGAATGTTGTTCTTGAGAGCAAGTATGGTTCACCTAAAATTGTCAATGATGGTGTTACTGT TGCTAAAGAGGTTGAGTTGGAGGATCCTGTTGAGAATATCGGTGCCAAGTTGGTGAGACAGGCAGCTGCCAAGACTAACG ATTTGGCTGGTGATGGAACCACAACCTCGGTTGTCCTAGCTCAGGGTCTTATTGCGGAAGGTGTCAAGGTTGTTGCAGCG GGTGCCAACCCTGTTCTTATTACCCGTGGCATTGAGAAGACAACGAAAGCTCTAGTAGCTGAGCTTAAAAAGATGTCGAA AGAGGTTGAAGATAGTGAGTTGGCGGATGTGGCAGCAGTCAGTGCTGGGAACAATATTGAAGTAGGAAGTATGATAGCAG AAGCTTTGAGCAAGGTTGGTAGAAAGGGTGTTGTGACACTTGAGGAGGGAAAGAGTGCTGAAAATGCTCTATATGTTGTT GAGGGGATGCAATTTGACCGTGGTTATATTTCACCATACTTTGTTACTGACAGTGAGAAAATGTCAGTTGAGTTTGAGAA CTGTAAGTTGCTTTTAGTTGATAAAAAGATAACCAACGCAAGGGATCTTATTAACATACTTGAGGATGCAATTAGAAATG GTTTCCCTATTTTGATCATTGCGGAGGATATTGAACAAGAAGCTTTAGCGACCCTGGTGGTGAACAAACTTAGAGGATCA CTAAAGATTGCAGCACTTAAGGCCCCTGGGTTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATTTTGACAGG AGGTACTGTGATCAGAGAAGAGGTTGGTCTTACTTTAGACAAAGCTGGGAAAGAGGTTCTGGGTGAGGCCTCCAAGGTGG TGCTTACCAAGGATTCAACCACAATTGTTGGTGATGGAAGTACCCAAGAAGCTGTGAACAAAAGAGTTGCACAAATCAAG AACCAGATTGAGGCTGCAGAACAAGACTATGAAAAGGAAAAGCTCAGTGAAAGAATTGCAAAACTGTCTGGTGGTGTCGC CGTGATACAGGTTGGAGCACAAACTGAGACAGAACTCAAAGAAAAGAAATTGAGAGTTGAAGATGCTCTTAACGCCACAA AGGCAGCTGTTGAGGAAGGTATTGTAGTAGGTGGTGGGTGTACTCTGCTAAGACTTGCGTCAAAGGTGGATGCAATCAAG GCTACCCTAGATAACGATGAAGAGAAAGTTGGAGCAGATATTGTTAAAAGAGCTCTTAGTTACCCTCTAAAATTAATTGC TAAGAATGCTGGTGTAAATGGCAGTGTTGTGAGTGAGAAGGTTCTTTCTAGTGACAATTTTAGATATGGATATAATGCTG CCACTGGTAAATATGAAGATTTAATGGCTGCTGGTATCATTGATCCAACAAAGGTGGTTAGATGTTGTCTGGAACATGCA TCCTCTGTGGCCAAAACCTTCTTAATGTCAGATTGTGTAGTTGTTGAGATTAAGGAACCAGAGCCTGTAGTTGCTGGCAA CCCTATGGACAACTCAGGTATGATATGGGATTTAAGGCAATGA
Protein sequence (LotjaGi3g1v0145800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTAAGSCNLSSSASISAFPFAGGARRSSSSSSNSVVLSRKTRNLKVSAMAKELHFNKDGSAIKRLQAGVNKLADLVGV TLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAA GANPVLITRGIEKTTKALVAELKKMSKEVEDSELADVAAVSAGNNIEVGSMIAEALSKVGRKGVVTLEEGKSAENALYVV EGMQFDRGYISPYFVTDSEKMSVEFENCKLLLVDKKITNARDLINILEDAIRNGFPILIIAEDIEQEALATLVVNKLRGS LKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLTLDKAGKEVLGEASKVVLTKDSTTIVGDGSTQEAVNKRVAQIK NQIEAAEQDYEKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIK ATLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNFRYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHA SSVAKTFLMSDCVVVEIKEPEPVVAGNPMDNSGMIWDLRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 28 | 28 | - | – | |
PANTHER | 42 | 587 | 546 | 0.0 | – | |
PANTHER | 42 | 587 | 546 | 0.0 | – | |
Hamap | 51 | 594 | 544 | 36.578 | ||
TIGRFAM | 52 | 579 | 528 | 7.6E-223 | ||
CDD | 53 | 576 | 524 | 0.0 | ||
SUPERFAMILY | 60 | 574 | 515 | 6.95E-72 | ||
Gene3D | 62 | 574 | 513 | 1.9E-214 | ||
Pfam | 74 | 577 | 504 | 5.5E-103 | ||
PRINTS | 78 | 104 | 27 | 7.5E-67 | ||
PRINTS | 134 | 161 | 28 | 7.5E-67 | ||
Gene3D | 187 | 460 | 274 | 1.9E-214 | ||
SUPERFAMILY | 191 | 257 | 67 | 8.7E-17 | ||
SUPERFAMILY | 235 | 426 | 192 | 8.72E-74 | ||
Gene3D | 242 | 422 | 181 | 1.9E-214 | ||
PRINTS | 318 | 341 | 24 | 7.5E-67 | ||
Coils | 389 | 416 | 28 | - | – | |
PRINTS | 400 | 425 | 26 | 7.5E-67 | ||
PRINTS | 448 | 469 | 22 | 7.5E-67 | ||
ProSitePatterns | 455 | 466 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. | ||
Biological process | Protein refolding | The process carried out by a cell that restores the biological activity of an unfolded or misfolded protein, using helper proteins such as chaperones. |
Expression pattern of LotjaGi3g1v0145800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…