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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0146800 |
Transcript ID | LotjaGi3g1v0146800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | BED zinc finger,hAT family dimerization domain; TAIR: AT3G42170.1 BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER; Swiss-Prot: sp|Q6AVI0|RSLE2_ORYSJ Zinc finger BED domain-containing protein RICESLEEPER 2; TrEMBL-Plants: tr|A0A151RYB6|A0A151RYB6_CAJCA Putative AC transposase; Found in the gene: LotjaGi3g1v0146800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:19664294..19667589) extracted from Lotus japonicus Gifu genome v1.2.
AACCGTTAAGAACCGAACCGAACTCGAACCTAAATTTAAAAACCGGTTCGGTAACCGAACCAAAATCTCAAAACCGGTTC GGTAACCGAACCGAACCGATATATCCATTTATCCTGTTTCCACACAACCAATAACGGATAACCAGTTAACCACAGAACCG AGAAGTGAGAACCAGTGATGAGTGAACCCTAATTTCAGCACCGCGCCTCCTGCTCCTCCTGCCGGCCGCCGCGCCACCTC CTCATTCCGGCAGCGCCTCCTCCTCCTCCTTCCGGTCGCGCCGCCGTCACCTTGAACACGGCCAGCACGGCAGAACCGCC GTCACCTTGACCACCGAGCTCAGATTCTTCCCACCAACAGCGACGTTCCAACGTAGGTGATATGAGGTCGTAGACTCGTA GGTAAGCTTTCTATTTGTTTGATTATCTATTCATTGTAGTTTCTGATCTGGGTTTGGTTCATTTTTGCTGATTATTTGAT GATTGCTTTTCTATAATCGTTTGTGATGCTCTAATTATTGGCTCAAAAACCAATTTAACTTTTGAGCTGAATTGAACTGC ACCCTTAATTGTAATTAACATGTTAATAAGCTCCCTGAATGTAGCTTTCCTTTCGGTTGTTATTTGACATTGGGGGGTTG CTATATGTTATGTTATAAGTATATATCAATTGAACATCCTAGTATTGTTTAATTATGTACCATTGTACCTAATATTGTTT TTATCTGGTAGATCTGCTTTTGATATTTAGTATTTACAGTCATGTTGAGTTCATTGTCTCATTTGCGTAAATTTGCCAGG TTGAAGTCCCAGATGCTTTGTTAGAGCTGTACTTGCTGCTGAGATTGACACAATTTCTCCTCCAGAGCTTGTGAAACAGT TTGAGCAAGTCCTAGCTGCAAAATCTCAGGTCAGTTTGATATTTAGAATGTTAATTGAATTAAAGCTGCAAAATCTCAAG TCCTAGCAGTACATTTAGAGGTATATGATGATTTTCAGCACTGATATTTTGAATGTATCAAGTTTCTTCCATTGCTATAT AAATTGTTAATTTGATAATTAGAGGTATATGCTGATTTGTAGGCTGCAACACTGATATAACTTGTTCTTTTGCTGCTATT TGTGTCTTAGAATCACTATCTTTTGCTGTAATCAGTCAATGTAGTTATGTGCTTGTTGCTTTGATAAGTTGCATCATGAC AATGTAGTTTTTTGAATAGATGTCGTCACCAAGTAACCAGATGGATTCCGAGTTCCAAGAAACTATGCAAGATTCAATAT TTTCTACACCAGTTACTAACACTGGAGTTGATGTTACATTCCCACCACATCCTAGCACATCAACTGGCAAAAGGAAACAA CCCTCAGAAGTGTGGCTCCACTTTTCACAACAACCTAATGATAAGAGAAGGGCTGCGTGTAACTACTGTGGTACTCTCAT TAGTAGGAATGGAACAAGTACTATGCGAACCCATTTGACGAGATGCTTGCAATATCCAGGCAGTGAAAAAAATAAGAGAA GAAAAGATGGTCCATTTCCGCAGGCTGCAGAAGGACAAGTAGGAAGTGGCATTGTTTCTTCGCCTACGGTCTTTAAGTTT GACCAAGATATATGCCGAACAGAACTTGTGAGGATGTTTATTGCTGCTGAGCTTCCATTCCGGTTTGTCGAAAATGAAGC CTTTCGCCAGTTTCTAAGTGTTCTACAACCGCGATTTGTTGTCATTTCACGGTCTACTCTGAGGAGGGACATTGAAAAAA CGTTTGTTGACGAACAAGTGAAGTTGAAAAGGTTCATGTCCAAACATTGTGGTAGGGTGTGTCTTACAACAGACACATGG ACTTCTGTGCAGAATTATTGTTATATGAGTTTGACTGCGCATTTTATTGATGATGATTGGAACTTGCAGAAAAAGATTAT AAACTTTCGGAAAGTTACGGGACATTCTGGAGTGGTTATAGCTAACAATGTCGAGTTGTTTCTGAATGAGTGGGAGCTAA GTCAAGTCTTGACTATAACTGTGGACAATGCTACATCTAACGATTCTGCGATTGACAAGCTTAGAAATAGTTTCTTGCCA TTGAACAAGGTGATTTTGAATGGTGAGTATCTTCACATGCGTTGTTGTGCACATATACTCAACTTGATTGTCAAAGAGGG TATGAAAGAGATTGATATTTCTATTTTGAGGATTCGAAATGCTGTGAGATATATGAAGTGCTCTACTAAAAGATTTCTTA AATTCATGAGCTATGCTGAAAGTGTGCATATATCATACAAAGGTATGCTGAGTTTAGATACAGATACTAGGTGGAATTCA ACATACACAATGTTGGAGGCAGCTGTACAATATGAGAAGGTTTTTGTGTTGTATGAAGCACGAGATTCCAAGTTTAAGAA AGCAATGTCAAAAGATAATGGGAAGGGTGTTCCTACATCTGCAGATTGGGACCATGTGAAGTCTATTTTGCCTTTTCTGA AAATATTTCATGCTTCCACAAAGCGCATTTCTGGTTCCTACTACGTAACCAGTAATGTGTATATGAAAGAAGTATTTTCT ATCGGAAAAAAAATAAGGCAATATGAAAGTGATTACAATGCTAAAATAAGGTCAATGGCTAGCAACATGAGGAAGAAGTT TGAAAAGTATTGGGGGGACCCCGATAAAATGAATGTCTTCTTGTTGATTGCTGCTGTACTTGATCCCCAAAGTAAATTGG GCTATGTTAGCCACTTTTTGAAGTATTTCTTCGGTGATGAAATGGGGAATGAGTTGATATCAAAGATGAACTCTAGCTTG AAATCTCTATATGAGCTATATGGAGGCAAGGAAGCGGGTTCTCAAAGACAACTCGACCAAATGGATGAAGATGATGATGA TGATGATGATGATGATGATGATGTTTATTGCATGAATTACTACAACCAAGAAACTGGATTTCGGGTTGATGCTACGTCTG AGTTGGAGAAATACTTGAATGAAGCCCGTGAGCCTTTTACTAAAGGGGTTGAGTTTGATATTCTAAGTTGGTGGAAGGTC AACTCAAGTAGACTTCCGATCCTGTCAAGAATAGCTCGAGATATATTACCTATTCCGGTCTCTACGGTAGCATCAGAATC TGCATTCAGCACTGGAGGAAGGGTGTTGAATGATTTTCGGAGCTCCCTAACTCCGAAAATGGCAGAGATGTTGATTTGTA CCCAAGACTGGATGAAAGGAACACCTTTTTCCCTGGTTTCTAGTGAGGACTTTGAGGAGCTTGAGAGATTTGAGAAAGGT TAGTTTGCATCAATCT
CDS sequence (LotjaGi3g1v0146800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCACCAAGTAACCAGATGGATTCCGAGTTCCAAGAAACTATGCAAGATTCAATATTTTCTACACCAGTTACTAA CACTGGAGTTGATGTTACATTCCCACCACATCCTAGCACATCAACTGGCAAAAGGAAACAACCCTCAGAAGTGTGGCTCC ACTTTTCACAACAACCTAATGATAAGAGAAGGGCTGCGTGTAACTACTGTGGTACTCTCATTAGTAGGAATGGAACAAGT ACTATGCGAACCCATTTGACGAGATGCTTGCAATATCCAGGCAGTGAAAAAAATAAGAGAAGAAAAGATGGTCCATTTCC GCAGGCTGCAGAAGGACAAGTAGGAAGTGGCATTGTTTCTTCGCCTACGGTCTTTAAGTTTGACCAAGATATATGCCGAA CAGAACTTGTGAGGATGTTTATTGCTGCTGAGCTTCCATTCCGGTTTGTCGAAAATGAAGCCTTTCGCCAGTTTCTAAGT GTTCTACAACCGCGATTTGTTGTCATTTCACGGTCTACTCTGAGGAGGGACATTGAAAAAACGTTTGTTGACGAACAAGT GAAGTTGAAAAGGTTCATGTCCAAACATTGTGGTAGGGTGTGTCTTACAACAGACACATGGACTTCTGTGCAGAATTATT GTTATATGAGTTTGACTGCGCATTTTATTGATGATGATTGGAACTTGCAGAAAAAGATTATAAACTTTCGGAAAGTTACG GGACATTCTGGAGTGGTTATAGCTAACAATGTCGAGTTGTTTCTGAATGAGTGGGAGCTAAGTCAAGTCTTGACTATAAC TGTGGACAATGCTACATCTAACGATTCTGCGATTGACAAGCTTAGAAATAGTTTCTTGCCATTGAACAAGGTGATTTTGA ATGGTGAGTATCTTCACATGCGTTGTTGTGCACATATACTCAACTTGATTGTCAAAGAGGGTATGAAAGAGATTGATATT TCTATTTTGAGGATTCGAAATGCTGTGAGATATATGAAGTGCTCTACTAAAAGATTTCTTAAATTCATGAGCTATGCTGA AAGTGTGCATATATCATACAAAGGTATGCTGAGTTTAGATACAGATACTAGGTGGAATTCAACATACACAATGTTGGAGG CAGCTGTACAATATGAGAAGGTTTTTGTGTTGTATGAAGCACGAGATTCCAAGTTTAAGAAAGCAATGTCAAAAGATAAT GGGAAGGGTGTTCCTACATCTGCAGATTGGGACCATGTGAAGTCTATTTTGCCTTTTCTGAAAATATTTCATGCTTCCAC AAAGCGCATTTCTGGTTCCTACTACGTAACCAGTAATGTGTATATGAAAGAAGTATTTTCTATCGGAAAAAAAATAAGGC AATATGAAAGTGATTACAATGCTAAAATAAGGTCAATGGCTAGCAACATGAGGAAGAAGTTTGAAAAGTATTGGGGGGAC CCCGATAAAATGAATGTCTTCTTGTTGATTGCTGCTGTACTTGATCCCCAAAGTAAATTGGGCTATGTTAGCCACTTTTT GAAGTATTTCTTCGGTGATGAAATGGGGAATGAGTTGATATCAAAGATGAACTCTAGCTTGAAATCTCTATATGAGCTAT ATGGAGGCAAGGAAGCGGGTTCTCAAAGACAACTCGACCAAATGGATGAAGATGATGATGATGATGATGATGATGATGAT GATGTTTATTGCATGAATTACTACAACCAAGAAACTGGATTTCGGGTTGATGCTACGTCTGAGTTGGAGAAATACTTGAA TGAAGCCCGTGAGCCTTTTACTAAAGGGGTTGAGTTTGATATTCTAAGTTGGTGGAAGGTCAACTCAAGTAGACTTCCGA TCCTGTCAAGAATAGCTCGAGATATATTACCTATTCCGGTCTCTACGGTAGCATCAGAATCTGCATTCAGCACTGGAGGA AGGGTGTTGAATGATTTTCGGAGCTCCCTAACTCCGAAAATGGCAGAGATGTTGATTTGTACCCAAGACTGGATGAAAGG AACACCTTTTTCCCTGGTTTCTAGTGAGGACTTTGAGGAGCTTGAGAGATTTGAGAAAGGTTAG
Protein sequence (LotjaGi3g1v0146800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPSNQMDSEFQETMQDSIFSTPVTNTGVDVTFPPHPSTSTGKRKQPSEVWLHFSQQPNDKRRAACNYCGTLISRNGTS TMRTHLTRCLQYPGSEKNKRRKDGPFPQAAEGQVGSGIVSSPTVFKFDQDICRTELVRMFIAAELPFRFVENEAFRQFLS VLQPRFVVISRSTLRRDIEKTFVDEQVKLKRFMSKHCGRVCLTTDTWTSVQNYCYMSLTAHFIDDDWNLQKKIINFRKVT GHSGVVIANNVELFLNEWELSQVLTITVDNATSNDSAIDKLRNSFLPLNKVILNGEYLHMRCCAHILNLIVKEGMKEIDI SILRIRNAVRYMKCSTKRFLKFMSYAESVHISYKGMLSLDTDTRWNSTYTMLEAAVQYEKVFVLYEARDSKFKKAMSKDN GKGVPTSADWDHVKSILPFLKIFHASTKRISGSYYVTSNVYMKEVFSIGKKIRQYESDYNAKIRSMASNMRKKFEKYWGD PDKMNVFLLIAAVLDPQSKLGYVSHFLKYFFGDEMGNELISKMNSSLKSLYELYGGKEAGSQRQLDQMDEDDDDDDDDDD DVYCMNYYNQETGFRVDATSELEKYLNEAREPFTKGVEFDILSWWKVNSSRLPILSRIARDILPIPVSTVASESAFSTGG RVLNDFRSSLTPKMAEMLICTQDWMKGTPFSLVSSEDFEELERFEKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 23 | 49 | 27 | - | – | |
ProSiteProfiles | 46 | 88 | 43 | 10.809 | ||
SMART | 46 | 92 | 47 | 3.2E-11 | ||
Pfam | 49 | 88 | 40 | 1.5E-10 | ||
SUPERFAMILY | 49 | 90 | 42 | 2.26E-6 | ||
MobiDBLite | 92 | 114 | 23 | - | – | |
PANTHER | 127 | 668 | 542 | 8.5E-128 | – | |
SUPERFAMILY | 191 | 667 | 477 | 2.2E-79 | ||
Pfam | 431 | 534 | 104 | 1.4E-21 | ||
Pfam | 581 | 665 | 85 | 2.9E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0146800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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