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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0149600 |
Transcript ID | LotjaGi3g1v0149600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein translation factor SUI1-like protein; TAIR: AT5G54760.1 Translation initiation factor SUI1 family protein; Swiss-Prot: sp|A6MZM2|SUI1_ORYSI Protein translation factor SUI1 homolog; TrEMBL-Plants: tr|I3T7H3|I3T7H3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0149600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20156319..20160261) extracted from Lotus japonicus Gifu genome v1.2.
TAAAGACATTGCCGAAGTAGCTTTTGTGCTCACGATTAAGAAGCTTTCGACTCACAATTCATAAAAGATTATCATCACCA TTTGCTTCGACTACACACTTACATCGCACGTGACAATCACGTGCACCTTGCGTTTTCAACATAAATAAATATCTTTTCCT TCCAAAATCTCAAACACTATCTCACACACCTCACCGAGTCGAAGACAGAGACAGCGACACAGGTTTCAGTTCATTCAGCC TAATCCAATTTAGGGTTTCGGTTCTCAACCCAATTTCTCACCCTTCGAAACCCTGAATCTTGGATCAGGTATTCAATCTC TCATCATCTTCAATTTTAGGGTTTGCCTTTGTTGTTTCACCATCGATCTTTCAATACTTTTCAGTTTCATTCAATTTCCC TTCGGAACGTGTTTTTTTTTTGGGGATTTGATTAGGTATTTTAGGTAGCAATCGTTGATTTGGTTCTGATTGGGATTTTA GGGTATTCTGTATCAACGTTGAATTGAATTTGCTTCATCTGCCATGTTTGATTTTACGTTTTCTGTGCTCTTTGCCATGG TTTCTGGAATATTATTCTGATTTGACTGAGATGATGGATATTTTTTTTTCTTTCAATTTTGTATTTATCTGAAGTGTGTT GTTATAGCAATTCTGCTAACATGTTATTGTTGATGGTGAATTCAGGTTTGAGCTATTTGTTTGGTTGGATCGTCTGTCTC GGAGAATTAAGTTTTATGTCTGAATTAGACGCTCAGATTCCTACTGCCTTCGGTATGTTGGGACTTCCTGAAAAGTATTT GGTGTTTATGGCTCCGTTTGGGAGAGCTTATTTGAGCTTATCTGATAGCATACGTTGTGCAAGTGTTTGGGAGAGCTTAT GCAAACAGCTTATGGCCTACCATAAGGCCATAAGCTGGGCCATAAGCTGTTTTGAGCTTATTTTCACAAGCTACTCAGGA TAGCTTATGAAAAAGAGCTTATGCTTATATATATATATATATAGCTTATTTTCAATTTTTTTAATTTTTTTAAAATAGCT TATGATTAAGCATAAGCGCATAAGCGCTTAATTAAGCTGTTTTCCCATACGGGGCCAGCTAAATATGACATTTATGCACT TTATTCGTTTAAGTCTTGAAGTTGTGCACCTTTTCCAATGTGTTAGGCTTGGTTATTGCTTGCTGCTACTCTGATTATAT GAATTAGGTATAATGATTGTAGTCTAAAATGATGTGTGCTGATTCGTAGATCCTTTTGCTGAGGCAAATGTTGACGAGTC GGGTGCTGGGGGTGCTGGGACAAAGGACTATGTGCATATCCGCGTGCAGCAGAGGAATGGCAGGAAAAGCCTGACAACTG TTCAGGGATTGAAGAAAGAATTCAGCTATAACAAGATACTGAAGGACCTTAAGAAAGAGTTCTGTTGCAATGGTACAGTT GTTCAGGACCCAGAACTTGGACAGGTTTGTGTTGACACTTGACATACTCATGTTAAACCATGATATATCCCTTGCTGCTT TTAGTAACATGTGTTTCTGGGTGTAGGTTATCCAACTTCAAGGTGATCAGCGGAAGAATGTTTCTACCTTCCTAGTCCAG GTATCTCTCACCTTATCTTTGTGTTATGCAGCAAGTATACTTCCCTAATTAGTTTCTCCATGTTAATTATCGTTTTTTTC CTTTCTCTTTTTGCTTTGCTGTGTATGTTATTGTTGTTTGAAAGGCCAAATATTGGAAAGCCTCTTTGAGAGAATTAGTG CATGTTTCAAATCTGTTTGAGAATATTTCATATGCCCTGACTGGTTTTGTCTTTGTGTAAGCAATTCTGGAGTTTGGAAC TCTTATCCAAACATACTTAAACTCTTGACTGTGTCTCTAGCTGCGGTTTTTTTAGGGACTGGATATCTTTTTAAAATTCC TTCAGAAGTCATTTGGATGTTCGCAATCTTCGTTGGTTATTCTTTTGACAAACAACTTGGCAGTTAAAAATTATTATGTG CCTTTTTCTGAGTAAGGTGAATGGGATTTGAGTGGGCAGTGGGTTGCCCATACCCAATATGCTGGAGTTATATAAATTAG ACCTTAAAAGTATTCCTAGCTATTCTGCAACGAAGAGAATTAACTTTATTTTGAACTAGTCATGGTTGGAACCGATTCAA CTTTACTTTGGGAAAATAATTGGGGTCTTCATATAACGTTGTGCAGTCTTTATGTAACATTGTAGAAAGCTGATTATACT TGTTCTGCCACATAATGATAATTAAACATTGGTTCATACCTCCAGTATTATGGGAGAAAATGTATCTGGATAATTTGGTC TTATTGGTCCTTTTTCACTTTGTGAATGTGAACAGGCTGGTATCGTGAAGAAGGATAATATCAAGATTCATGGTTTCTGA GCAGCTTGGAACTTAAGGGTCAAGCTTAACTGCCTTTGTGCTGGGCATATAGATGATCTGAGTTTATATGTGACTGGTAT TTCTAGTGTGTTTTGGTGTTCTACCGTGTGATGTTGGATTATGGGTTTTATAATACTCTATGTGTGTGTTTTTAAGACAT ATAAAAACAGTTTAATGTAGTCCTATTCTCTCATTTTGCATGTCTGAAATTTGGATGCATTCATCTACAGCTGATTGATT GGTCGTAGTTTTCATGCAGTCACTTGAAATAAAAAGAAAAGTTGAGAGAAATCCATACAAATTCTAGAAGCTAATTTTAA GGCTCAAATCTGGGTTTTTGTCCTTCATTGTTCTAAAGTGGGGTTTTTAGTGATGAAATTGGTCTTTGTTATTGTTTTCA AGTGAATTTAGGTAGTTGATGTATCAAACGGAATGCTATTTTATCAATGCCATGTCACATTAAATTGCTGACACATCATT CCGTTGCCATATAATCTGGCATGATTGGCATCTGTTAAAGTATCAATTATCCAATCTAAACCATAAACCTTTCCCCACAC CATTCGCTGCCTCTTCTTTGGTGGGATGTTGATGATGCTTCACCCTCATTTTCTTCAAAAACTACATAAGAGCCATTACT AATCTAAATTGCATTTTATTTCTTTATATTCTAAAAATTTAAGGGTTCCAAACCCTCACATTATGGAAGGGTTTCATACC CTTGTCTTCCTTGGCTTTATTTGTCTTCCTCAGCAAGCGTCAGAGCCTTTTACACCCATCAGTGCCTTGACTGATGATAT ACCTCCCTTAAAGATTTCCTCTCAAATTATACAAATCGGGACTTATCTTGGACCATTAGAAGAATAGTGTAGTCTTCTTT GGTGATTCTGTGTGGGTTAGAAATGAGTTTGAATTACCATACGGTTATCCTGACTCTGAGGTTTGGTTTTATTTTATCCA GAATTGAATTGGTTAAAACTAGTTCATCCTTCACTGATATACTTCTTTTTTCACAATGTTTTTATACTCGTCTATTACCT TCGAAAATTAAAGGAACAAAAATATTACATGTATAGAACGTATTTCTGATATTAAATGAATTTTCTTTTGAATATTTGTT ATATATTCATTTTATAATTTCATTTAACCTAAACTTCATATTAATTCAGTCTTGTTTTGATTAACTATATATACCGGTGG CCTAAATGGTACTTGGTGAAACCCAATTTCTCAAACCCTGCTGGTAATTAGAATTCTAAAAAGCTATATATGACATAGGC CTGTCCAACTTATTTTGGCCCGCTCGAAACCGCTCAGCCCGTGGCAAAAAAAAGGTGGCCTAAATGGTACTTGGTGAAAC CCAATTTCTCAAACCCTACTTGGAATAAGAATTCTAAAAAGCTATATATGACATAGGCCTGTCCAACTTATTTTGGCCCG CCCGAAACCGCTCGGCCCGTGGCAAAAAAAAGGCTTTTCGGGCGGGCCGGGTCGGTTCTCGGGTCTTGCAATTTAAAAAA ATCGGTTTTAGCCGGTCTGGTTT
CDS sequence (LotjaGi3g1v0149600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAATTAGACGCTCAGATTCCTACTGCCTTCGATCCTTTTGCTGAGGCAAATGTTGACGAGTCGGGTGCTGGGGG TGCTGGGACAAAGGACTATGTGCATATCCGCGTGCAGCAGAGGAATGGCAGGAAAAGCCTGACAACTGTTCAGGGATTGA AGAAAGAATTCAGCTATAACAAGATACTGAAGGACCTTAAGAAAGAGTTCTGTTGCAATGGTACAGTTGTTCAGGACCCA GAACTTGGACAGGTTATCCAACTTCAAGGTGATCAGCGGAAGAATGTTTCTACCTTCCTAGTCCAGGCTGGTATCGTGAA GAAGGATAATATCAAGATTCATGGTTTCTGA
Protein sequence (LotjaGi3g1v0149600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSELDAQIPTAFDPFAEANVDESGAGGAGTKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDP ELGQVIQLQGDQRKNVSTFLVQAGIVKKDNIKIHGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 115 | 115 | 1.9E-77 | – | |
PANTHER | 1 | 115 | 115 | 1.9E-77 | – | |
PIRSF | 1 | 116 | 116 | 3.0E-49 | ||
Gene3D | 2 | 116 | 115 | 3.7E-48 | – | |
SUPERFAMILY | 4 | 116 | 113 | 6.67E-35 | ||
TIGRFAM | 6 | 116 | 111 | 2.9E-56 | ||
Pfam | 31 | 105 | 75 | 4.7E-26 | ||
CDD | 32 | 115 | 84 | 5.06508E-52 | ||
ProSiteProfiles | 34 | 104 | 71 | 24.535 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi3g1v0149600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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