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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0149900 |
| Transcript ID | LotjaGi3g1v0149900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G14096.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096; TrEMBL-Plants: tr|A0A072UXZ5|A0A072UXZ5_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi3g1v0149900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20175103..20179906) extracted from Lotus japonicus Gifu genome v1.2.
TGAGCTCCCAGTCTCCCACCATCTCACGTTGATCATTAGATTTGACACCTCACTCATTAGAAATATCATCCCACTTACGG AAACTCAGTTTCCGAAATATTTCGGAAATAAAGTTTTCGAAGCTCTTTTTCACTCAAAAGTGGGGTGTTACATGTATTTT ACACTACAAATCACGAATTAATTTCGGAATCTAAGATTCCGAAATAATTCGGAACTTGAAAATCCGAAAATTGAGGGTGT GAAATATAATGGTTGGGGTGGCAAATCCAGCTCTCTCTCATGTTCCTTTTCCCTCCTTTGTACTCCTTTTTACCCCTTCT TCTCTTTCAGTGTTTGATAGTTGATACCCACTACACACACTCGCTTTCAGGTATGAACCACTTCCTCGCTCTCTGATTTT TCACGATAAAGCAAACTTCGATAATTTCATGATTTTCTCTTTCTGATCACAGATTTTTGCTTCAGTTACTTGTTTTATGC CTCTTCTTGCATTTGAATCTGACCAAATATATTTAGGGATCTGCTAAAATGACAAATGTTGTAGTCTCTTCCATACAATT GTGTAGTTCATATGAATGAATGAATGACCATTCGAATTAGGGTTTCTTTATGTTTCTTGCTATGTTTTTTCCTCTCAATT CAAACCTTGTTGGGATGCAACACAATTGACTGTGAGTGATCCAATACGCTATTATGTACACCATTACTCAAAAAGCCACG TTTATTCTCTGTTTTTTTTTTTAATTTTTTTATAGGCAAATGTTAGTTGTTAGTAATGTTAGTGAATTAGTCCCTCCTCA GGGTTCAAAAGGTTCAAACCCTGGACCCTTCATCCTTCATCCCGCGGCCCAACCCGTATGTTCCCTAGCTCTAACCACTT GAGCTAACCCTCTGTGTAACAAAAGGATAGGAACTTGGCTATTGGGGAATTAGCTTATTAGGATTTAATGTTTGTACACC GTCAGTGTAAACATTCTTTACACATACACTCAATTGTTTTCTGTCACATCTGAAATTAAAGCTTTTAATTTAAATAATAA TGAAATGTAACTGTTAGTCTTACGTGGCACAAAGTGATTGGATGTCGTGTAAAAAAAAACTACACTGACGCTGCATATCC ATTACAACTCGGTAGTCAGTTAATAACAAACTTCGGTTTTAACTGAATTATTGAACTTTTCATTAGTGACTTGTATAAAT ACTGTGATCAATGAGAATATTTTCACTTTGTTCATTTCTGTTTCTGCACTGAGTCTCAATACTTGCCTATTAATTGGATC TATATTTCATCATGCTAGAAGATTTGACTTGTGACTTGTCTGCTTGATAATTATACTTTTTTCATCCATTAGGCACAGCA GGGGTTATGGCTGGTTTAATCTCATCATCACCTGATACACATAAGCTCCAAAGAAGTAATGTGGGTGAAATGAAGGATAT GATCAGCAACTTACCTGATAGCCTTCTTCATTACATTCTTTCTTTGGTCCCTACCAAAGATGCTATACGAACTTCCATTT TGGCTAAAAGGTGGAAGTACTTGTGGACCTGCTTATCTGTCTTTGATTTTGAAAAGGATCGGTCATTTATCTGCATGAAA GAAGACCAAAGACAGAAATCTCTATATTGCCTCTTAGATCAAGTGCACAGACTACTTTATCATTCTAATTGTGTGAAAAA GCTCCGTGTCAATTACTTTGGAGTTGCCATTGATGCAGATCGAGTTAATTCTCTTATTTCTGCTGCAGTGAAGCACAAAA TCGAAGAGCTTAAGCTTTACATACTTCTAAAGGCTCAGTTTGTGTTACCTCATTGTCTCTCAGCTTTTGAATCATTGAAT AAGCTGGTTTTAGAACTGGGTTGTGCTCTAAATGTTCCTAGTGGCATTCACTTCCCTGGCCTGAAGAGATTAAAGCTTTC GTGTGTTAACTTTGCAAATGAGAAGTCAGTTCAACATCTTTTCTCTGGCTGCCCTGTCCTACAGAAGTTAACCTTGTTCA ATTGTAATTGGTGGAACATCAAGCAGGTCGGCATTACAATTCCCACATTAAAGACATTAACCATCTTTTGCGACCGTTCT GATCGAGAGGATTTGCTCAATTCTAAAGTCAAGATTGAAGCTGTGAATCTTTTATACCTCAGTTGCTCAACCTATCTAAT AGTAGACTTTGTCCTTGTTAACCTAGCCTCCGTAGTTGATGCATATATTGATGTTGGGTGTTGCTATCCATTATGTCCAC AAATCTCTGGTCCCCGTGCATTTAAACTATTGAGTGGACTTGGTAGCATCAAATCTCTTAGACTATCAACTGATACTCTT GAGGTATGTTTAGTAGAACTGCTTGCTGATTGTCTTCATTTTTTAACTGTATAATAGCTATTAACATTGTTTGCCTTCAA TTATGTGTTTATTATATTAATTTCAACTGATAATTTTTTTTCCCTTTTGCCAGTCTCTTTCATATGCAAAAAATACTCTC CATCTCCTTCCTTTGTTTGACAATTTGACTCATCTTGTTGTGGATTTGGGAAATTTTGAGTCCACTAATGAAGCACTAAT GGAAATTCTCCAAAAGACACCTAAATTGGAAGTTCTTCATATTCCTATGGTACATCTTTTATCCTGCTTGAATACTTGCA TTGCCATGTTTCAAGGCTAACAGTAGTATTATTTCTGTCCATTGATTTGTTCATTGAATCTTATGTAGGGATTTGACCCA CAGATCTGCTTGGATGGTGAGGACTGGAGGTTGAACTCAGTACCTTGTTGTTTCAAATATAGTCTCAAATTATTCTCTAT TTCAAATTTTGATGGGAGTGAAGCTGACATTCAGTTGCTGAGGTTTTTGTTAGAAAACGCCAGAGTTTTAGGGGAGATCC GGATATTCTGTTCTAAAACTTTATCTGCTGATTTGAAGAAGCAGGCTGAGATCAGCCGGTTGCAGCTTGTAGGCCTGGGA AGTTGTGTCATTAAGTTCCAGTAAATCTTCTTTCCTTTATTTAGTCTTATTTTGCTTCTTTTTTTCTTTCAAAAAGGTAT TTATTTATGGACAGATGCTGATGTAACCTCATGACAAAGCTTGAATTGTGGTCAAATGAATTCGCTTTGCCTGGTTAGAC TAAAACGACTGTTTCATGGTCTGGCACTTTGCCAAATGACTTAGTAAGTTATTGGAAATATTCATAATATTGGATGAAAC TGACATGTTAAAATTTTCAGAATTACTAGTATTGCCTAGACCCATTGATCAATAGGAAGCCTCATCATAATCAGCTTTAG ATTTTTTTTTTCCTAAGCAGCATTTTTAGGAAGTGTTCCAAAAACATTCCCTTCCTTGCCAGGCACCCTTCAAATTCAAT TTTAGCTTGATAGAAGACCAGGGTACATATCTCACCATAAATAGTGCAACTACTTTGAGACAGCATTTTGTTTCTTGGAC TTGCATGAAATAAGTGAGTTGCAGAGGAATACATAACAGCCTGTGGTGGACTTTCAAGTGTCCACACAACTTTCCCAATC TACATCCGCATAACCATTAATGTTAAGAGAGGGGTTAGAAGGAGCACCCTTAAGGTGTCTAAGTATATGGAATAGCAACA GCATGAAGTTGTGTAGGATTAGAACCGCGGGTTTACAGTCTATAAAGTGGTGGTTTGATACAATCTCCCCAGAAATGCAA GGGATTATCAGATTGAAAATAGAGAGATCGAGCAACACAACTAAATTGATGAAGGGTGCCATGAGAAGCCAGAAAATTAG TAAGGAATTCCTTTACATTTTCGGATCATAATTACTTTACTTTTGTATTGAACTGGGCTTCCACCATATTGAAATCCTAA TTGAGAAATTCAGTGTATGTTTAGCTGGGATAAGACTATTGTTTAGGTTTATGTTAGACTTGAATAGATAAAGAACATTG TCCAAGCTACCTTCCCAATCATCTTTAGGGACTTCTGGCCCTCTATCAAGACAGAATTGTTAGTGAAGATGATGGAGATG TTATGGACAGTGAGAAGACAATTCACAAAATTAAGACTCGTCTGAAGACTAGAAATATGAAGGACATTAAGATTGTAAGT TTATTCTTTAACATTACTATACACAATATGTGCAACTTGAATTTTGCTATTATTTGGCAAAATAACAAAGGAACTGTTAA CAGCAGAATAAGAAGTGGAACTCACACTTGTTCCCATCCACTTTCTCTTCCATATCATTTTCATTTTCACTACTTTATTC CTATCTTTTTTCTTATCATGTTATATATCATATCTCTTTCTTCTATTCTTATCTCTATGAGTGTGCGTGGATTGGACTTG AGGTATTGATGAACTATTTACTTCAAAGATTCAAATGTTACTGGGCCTTGTTGTCAAACGACAGTTGTCTCGGTGGCTAC CTTAACTGTAACTATAATTTGAGCTCAATGCTTCAGGGCTTATTATTCATATAAAATGTCGTAAGTGGAAAAGATACTGG TGAAAGAAATTTTCTGATAATTAGGGGTTTCATCATTTGGATCGACCTGATCAACACAATAATTAATGTCAAACTAATAT AATTGCTTAATATTTTTTTATTAATTTAAACTCAAACCAAACCAATTGCAATAAATTCAATTTTATGATTTATTGTTTTC AATTGAACCAACTTGATAAACTTCTTTTTTTCATATTTAGCATGTGCGTTTCCAACTTCTAAACTTTATTAGTTCGCACA GTTTGAAATATAGCCTTGATGAGGTTGCTCTTGACTCATTAGTTCGCGCAAATTGAGATTAGGGTTTTTTGAAGAGCAGT CAGA
CDS sequence (LotjaGi3g1v0149900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCTTTTCCCTCCTTTGTACTCCTTTTTACCCCTTCTTCTCTTTCAGTGTTTGATAGTTGATACCCACTACACACA CTCGCTTTCAGGCACAGCAGGGGTTATGGCTGGTTTAATCTCATCATCACCTGATACACATAAGCTCCAAAGAAGTAATG TGGGTGAAATGAAGGATATGATCAGCAACTTACCTGATAGCCTTCTTCATTACATTCTTTCTTTGGTCCCTACCAAAGAT GCTATACGAACTTCCATTTTGGCTAAAAGGTGGAAGTACTTGTGGACCTGCTTATCTGTCTTTGATTTTGAAAAGGATCG GTCATTTATCTGCATGAAAGAAGACCAAAGACAGAAATCTCTATATTGCCTCTTAGATCAAGTGCACAGACTACTTTATC ATTCTAATTGTGTGAAAAAGCTCCGTGTCAATTACTTTGGAGTTGCCATTGATGCAGATCGAGTTAATTCTCTTATTTCT GCTGCAGTGAAGCACAAAATCGAAGAGCTTAAGCTTTACATACTTCTAAAGGCTCAGTTTGTGTTACCTCATTGTCTCTC AGCTTTTGAATCATTGAATAAGCTGGTTTTAGAACTGGGTTGTGCTCTAAATGTTCCTAGTGGCATTCACTTCCCTGGCC TGAAGAGATTAAAGCTTTCGTGTGTTAACTTTGCAAATGAGAAGTCAGTTCAACATCTTTTCTCTGGCTGCCCTGTCCTA CAGAAGTTAACCTTGTTCAATTGTAATTGGTGGAACATCAAGCAGGTCGGCATTACAATTCCCACATTAAAGACATTAAC CATCTTTTGCGACCGTTCTGATCGAGAGGATTTGCTCAATTCTAAAGTCAAGATTGAAGCTGTGAATCTTTTATACCTCA GTTGCTCAACCTATCTAATAGTAGACTTTGTCCTTGTTAACCTAGCCTCCGTAGTTGATGCATATATTGATGTTGGGTGT TGCTATCCATTATGTCCACAAATCTCTGGTCCCCGTGCATTTAAACTATTGAGTGGACTTGGTAGCATCAAATCTCTTAG ACTATCAACTGATACTCTTGAGTCTCTTTCATATGCAAAAAATACTCTCCATCTCCTTCCTTTGTTTGACAATTTGACTC ATCTTGTTGTGGATTTGGGAAATTTTGAGTCCACTAATGAAGCACTAATGGAAATTCTCCAAAAGACACCTAAATTGGAA GTTCTTCATATTCCTATGGGATTTGACCCACAGATCTGCTTGGATGGTGAGGACTGGAGGTTGAACTCAGTACCTTGTTG TTTCAAATATAGTCTCAAATTATTCTCTATTTCAAATTTTGATGGGAGTGAAGCTGACATTCAGTTGCTGAGGTTTTTGT TAGAAAACGCCAGAGTTTTAGGGGAGATCCGGATATTCTGTTCTAAAACTTTATCTGCTGATTTGAAGAAGCAGGCTGAG ATCAGCCGGTTGCAGCTTGTAGGCCTGGGAAGTTGTGTCATTAAGTTCCAGTAA
Protein sequence (LotjaGi3g1v0149900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLFPPLYSFLPLLLFQCLIVDTHYTHSLSGTAGVMAGLISSSPDTHKLQRSNVGEMKDMISNLPDSLLHYILSLVPTKD AIRTSILAKRWKYLWTCLSVFDFEKDRSFICMKEDQRQKSLYCLLDQVHRLLYHSNCVKKLRVNYFGVAIDADRVNSLIS AAVKHKIEELKLYILLKAQFVLPHCLSAFESLNKLVLELGCALNVPSGIHFPGLKRLKLSCVNFANEKSVQHLFSGCPVL QKLTLFNCNWWNIKQVGITIPTLKTLTIFCDRSDREDLLNSKVKIEAVNLLYLSCSTYLIVDFVLVNLASVVDAYIDVGC CYPLCPQISGPRAFKLLSGLGSIKSLRLSTDTLESLSYAKNTLHLLPLFDNLTHLVVDLGNFESTNEALMEILQKTPKLE VLHIPMGFDPQICLDGEDWRLNSVPCCFKYSLKLFSISNFDGSEADIQLLRFLLENARVLGEIRIFCSKTLSADLKKQAE ISRLQLVGLGSCVIKFQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 37 | 37 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 37 | 16 | - | – | |
| Phobius | 38 | 497 | 460 | - | – | |
| PANTHER | 49 | 484 | 436 | 3.1E-68 | – | |
| PANTHER | 49 | 484 | 436 | 3.1E-68 | – | |
| Gene3D | 58 | 311 | 254 | 3.9E-23 | ||
| SUPERFAMILY | 58 | 110 | 53 | 9.68E-10 | ||
| ProSiteProfiles | 58 | 94 | 37 | 9.286 | ||
| Pfam | 61 | 95 | 35 | 2.3E-4 | ||
| Pfam | 214 | 238 | 25 | 2.5E-4 | ||
| Pfam | 423 | 463 | 41 | 1.5E-9 | ||
| SMART | 426 | 497 | 72 | 0.0034 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0149900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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