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LotjaGi3g1v0150200.1

Overview

Field Value
Gene ID LotjaGi3g1v0150200
Transcript ID LotjaGi3g1v0150200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description F-box protein; TAIR: AT4G14096.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096; TrEMBL-Plants: tr|G7KDV1|G7KDV1_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi3g1v0150200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:20199280..20204668) extracted from Lotus japonicus Gifu genome v1.2.

ATTATTTAATATTTAAATTACTAAAAAAGTAGAAAATATAAATATGACATTATCTACCTACTAATTATAGTATGAGAGAA AAAGCTTATAAAGAAAGACATAGAATGATGGGGTGACATTTGTCAGAGTTGCCACTTTTTAGTTTCGAAAATAGTATATA GTATAAGATAAGATAAGATATGATAGGATAAGATAAGATATGATACGATAAGATTTCATTAAAAGGAATGTATTCATTTA TATATTTATATTTACAAAATTATTTTGTCAACCGAAACAATGGTAATTTTTTTAAAACATATAAATAAAATCACAATGTT TTTAAAACGAAAGCAACAATTAAGGGCAATAATTAAGTATTAATAATGGTTTAGCAGGCAACGTACACCATGACAGAAGC TTTCCAAATTCGAATGAACTGCATTATTATATTCAAGTGACCGTGATTTTGGTTGATTCAAATTTCCCATTTTTCGCTTC TCTTTCAGTGTTTGATAGGCACACGCTTCTTCAGGTATGAATCATTTCCTTGATATTCCAGTGTATTTTCCTTCTCCAGT TCTAGTTCTGTGTCCTCACCAATTGGTTAGATGAGTTTGCTGTATCCTAGGGAGTTGTCGCATCTCGAGCGAATGAATAA ACTCTTGAGAAGTGTCATGTGACATGCCCCATGCAATTGTGTTTCATATTGTATTTTTGATTTCATATCAATGTAATTTT TATTGAGTTCCCAGTGCAATATTTACAACATAAATATCCCATGAAGCTAGAAGCTTATCTTGTGACTTGTCTGGTTGATA GTTATATCTGTTTCCCTTTTTTCTGGTAGGCGCGACGAGCATATGGTTGGTTTAAAGTCATCACCTGATTCACATAAGCT CCAAAGACATAATGTGGGTGACATGAAAGATATGATCAGCAACTTACCTGATGGTATTCTTCATTACATTCTTTCTTTAC TCCCTACCAAAGAGGCTATACGAACTTCCATTTTAGCGAAAAGGTGGAAGTACTTGTGGACTGACTTATCTATCTTTGAT TTTGAAAATGATATACCAATGGCCAGCATGAAAGAAGACCAAAAACAGAAATCTATACATTGCCTTTTGGATCAAGTGCA TGGACTACTTTGTCATTCTAATTGTGTTAAAAGGCTCAGTGTCATGTTTTTTGGGGTTGCCGTTGATGCAGATAGAGTTA ATTCTATTATATATGGTGTAGCGAAGCATAAAATCGAAAAGCTTAAGCTTTCTGTACTTGTAAAGCCTCCATTTGTTTTA CCTAATTGTTTCTCAGCTTCTAAATCATTGAATAAGCTGCATTTAGATCTGGGATGTGTTGTAGATTTCCCTAGTGGCAT TCATTTCCCTAGCCTGAAGACATTAAAGCTTTCGCGTGTTACCTTTGCAAATGAGAAGTCAGTTGAACAACTTTTCTCTG GGTGCCCTGTCCTGGAAAAGTTAACCTTGTTTATTTGTAATTGGTCTAACATCAAGCAGATCAGCATAACAACTCCAACA TTAAAGATATTATCCATCTTTTCGGGCCTGGGAGTTGATAAGCTCTATTCTACTGTCAAGATTGATGCTGTGAACCTCTT ATATTTCAGTTTCACAGGCTATCTAGTTGTGGATTTTTCCCTTGTTAACCTGGCCTCCTTAGTTGATGCACGTATTGAGT GTCTCTATCCATTATTGCAAAAAATTATTGGTCCCCGTGCAATTAGACTAATGAGTCAACTTGGTAGCATCAAATCTCTT AGACTATCAAATGATACACTTCAGGTATGTTTAACTACTTACTGATCATCTTCATTTTTTAACTGTATAATAGCTATTGG CGATGTTTGCCTTAACTATGTGTTTATTATATTTGTTTCATATTTCCTCAATAATAGCTGTTGTATTTCCTACATAAGTT TACTTTTATTTCTTTTACTAGTGTCTTTCCTATGAAAAATATACTCTCCATCTCCTTCCTTTGTTCAACAATTTGACTCG TCTCCATGTGGATTCGGGAACTTGGGAGTTCACTAATGAAGCGCTAATGGACATTCTCCAAAAGACACCTAAATTGGAAG TTCTTCATATTCCAATGGTACATCTTTTATCCTGCTTCAATACTTGCATCTGCTATGTTTCAAGGCTAACTTGTTTATTG ATCTTATGTAGGGATTTGACCCACAGATCTGCATGGATGGTGAAGACTGGATATTGAACTCAGTTCCTTGTTGTTTCAAA TATAGTCTCAAATCATTTTCTATTTCATATTTTGATGGGGGTGAAGCTGAAATCCAGTTGCTGAAGTTTTTGTTAGAAAA TGCTACAGTTTTAGAGGAGATCCGGATATTCTGTTCGAAAACTTTATCTTCTAATTTGAAGAAGCAGGCTGAGATCAGCA ACCAGTTGCAACCTGTAGTCCTGGAAAATTGTGTCATTAAGTTTCAGTAGAACTTCTTTCTTGTGTTTTGTTGTACTGTT GTTGCTGCTACTACTACTACTGAATATTGGATAAAATTGACTAGTGTTAACATTTTCAGATTGCATTGACTAGATTCTAT TGATCAATAGTTATGTTTCTTCATAATCTGCTTCAGATTATTTTTTTCCCGATGCATATTAGGAAGTGGTCCCAAAATAT CCCCTTCAGTGCCAGAAGATCATATTTTAGTGAGTATGATTCGTAAAAGTTGTGATTGAGAGACAGACTTGAAGAAACAC AGTTTAGAGAAGAATACAAATGATGTGTTCTCTGAAAGATAATATATGTGGTTTTCTAGAGAAGTTGCACCCTAAATGTT CAATAAAATGTGTGATAAAAGGGGTGTCTTCCGGTGGATGCATTCTTGTCGAAGCAACAAATCTACTTTTGTTGGTAATT ACCAAGTTAATCTTTAATTGAATTCTGTGTATTGTTTACTTGAGAGCTTTGAGATGAAATGGTTTTCATTCATCACCCTC CAACATGAACTGAATGTGACCTTTAATACTGAGTGCTGCATTAGGAAAATCAAGATGGAATGTTTCGAGCGGCTGCATTC TGCCATAGAGGCTTCAACAAGTCAAATGTGTTTGGTCATGGTAGCTTTGAACTTGTGCATCAGGGAGTGCTCATTGATGA CAGGAAAGAAAGGTGAAGAATTTAAACTAGACTTTAATTTCTTCTTAGAACATATAAACCAGCCTTTTCTCTTTTATAGT AATTGCTGTAAAGAACTTGCATTGTTCTCTGCTGATAATAAACCAAATTGCATTGTTGAGTAAGAATTTTATTTTATTTT ATTTCTTTGAGCCTATTAACTTGATAGCATTCAGTGGCTTGGGAGCGCAATTCACTGTGGAAGTTGAGTTTCATTGGTTG ATTACATTTATCTGTAGATGGAATTGCTAAGTCTGTTGCATTTTCGTATTTGTTGGTATTGCTTGGGGTCGCTCTGTTAA TAATTATAAAAGGCTGGCGTACGGACCTGAGTCCCATTTTTTTAGAAAGCTAACAGAGTAAGCTTTGAAATGGTACCAGT TTAAATTCAGTTTTATTGTCAATCAATACCAGTTTTTTTAGTCTAATCTTTTTTTTGCATGACTCCCATTTTGTTCTAAT TATGGCAGTAGTAACTTAATCAAGCTAACTTCAGCTGTTCTTGCTGGATTTGAGTACTGTGTTTTTTTTGTTAGAAAGCG AACAAAGTAAGCTTTTAAAATGGTACCAATTTTAAATCCAGATTTCTTATCAATCAGTAGTTCAGTACCAGTTTTTGTTT TCTTTTGGAAAAATTCTGCATAGCTCCCATTTTGTTTTAATCCTGGCAGCAGTCACTTAATCAAGCGTAGCTTGAGCTAA GCTACGCTTGTGGGATTTGAGTACCGTTTTTTTGTTAGAAATCTAATAGAGTAAGCTTTAAAATGGTGCCTGTTTTAGAG TCAATTTTCTCGTCAAATTTATGAGTTATCTTTATCGGAACCGGGGTAAATCGAAGGAATAGGGAATTGATAGGAACCTA AATACCAATCTGATAGGAACATCAATTAAAACAATATCAATAACAGATATGAAAAAGTGCAGCACAAGATTTCATTTTGG CCATATAAAAGAAATGACATACTTGCATGGTCATTTGTTCATTTTTGTTGACAGCAGTTCTATAATTTTGTGCTGAGATT TCCACTACTGGTCCATGACTCTTGAACTTGCATTGATTACTGTAAATCTCAAAGAACACCCTCTATTGAAGGCGCTTACT AGAAACCTTCGAGAGATAGATGCTGGTAATCTGAACTGCAGGTCTCATTGATTCATACGCATAACTTCCCTGCAAGGAAG GATCAATTGCACTTCTTGCCATTTATAATTCTTCAATGGGGTTTAAAACATTATCATGTAATATTAGGAAATTTTTGATT TATGAGAATCTAAATTGAAGATATCTGACTTAGAACAAAAAGTCCTCTACTTCAATAGAGGATGCTATTTGTCTGCCTGT GATAACTCCAAATAGAATCACACCCAGCTGTAGATATATTCCTTTTCTGCTCTATTTGTGCTGCATATGGGGTTAAAAAC ATATTGTACTTACACTAAAGCAGTGGAATATAACAGAAGAAAAAGGTAGTAAGCAGAGGAAATACCTGGCGTTTTGATTA GTGGCACTTTGTTCATGAAGTATGTTCTGGAAATCGTATCATTACAGGTTAGAGTTTTGGATGCAATCTTACAAATAGTG GTGAGAGAATAAGCAAACTATGTAGCCTGTCCTAACCTTGGATGGCAAGGGAATGCTGTATCCACAACCTTTGCATTGAG AATATCATCCAACAGAATGTTCTCAATCTTGTAATTATTACCAAATATTCCTGTAGCAACTCCTGTGTGCAAAAACTTGA CTCCTCTTGCATTGCCTATACTGATTGCCATTCTTTGTGGCCATTTCAGAATTTCCCTTTTTTTTCCTATCTGTTAAATA AAACATCAGAGTTAAAATCTTTTGGACATTCAAATCTTTGCATTTGTATTTCATTCTGTGATTGCTAATTACCTGTAAGT TGATCCCTCAATGACACATTTGAGATGTACTCAAATACTATGTGTACTGTGCTTATGGATTTGGAGAGGGTCCTGATGAG TAATGACAGTGTGTCCTAGAATACTCACCATATGCCTATGTCTCAAATTGGCTAATACCTCTAAGTGCTGCACAATGCTA TGGGCCATGGGGCAAACCCTTATGCTTTATTTTTATACAACTAATTAATCAGGACCACTTAGCCAACCTTTATATAGCTG TGTAAATATGATTGATATTAAATGCCATTACAAAATAATGTTCACTCCTAACAACATTATGCTAGCTTACACCAATTAAT TTCTCAGTTACTTTAGTTCTATTTTCCCC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0150200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGGTTTAAAGTCATCACCTGATTCACATAAGCTCCAAAGACATAATGTGGGTGACATGAAAGATATGATCAGCAA CTTACCTGATGGTATTCTTCATTACATTCTTTCTTTACTCCCTACCAAAGAGGCTATACGAACTTCCATTTTAGCGAAAA GGTGGAAGTACTTGTGGACTGACTTATCTATCTTTGATTTTGAAAATGATATACCAATGGCCAGCATGAAAGAAGACCAA AAACAGAAATCTATACATTGCCTTTTGGATCAAGTGCATGGACTACTTTGTCATTCTAATTGTGTTAAAAGGCTCAGTGT CATGTTTTTTGGGGTTGCCGTTGATGCAGATAGAGTTAATTCTATTATATATGGTGTAGCGAAGCATAAAATCGAAAAGC TTAAGCTTTCTGTACTTGTAAAGCCTCCATTTGTTTTACCTAATTGTTTCTCAGCTTCTAAATCATTGAATAAGCTGCAT TTAGATCTGGGATGTGTTGTAGATTTCCCTAGTGGCATTCATTTCCCTAGCCTGAAGACATTAAAGCTTTCGCGTGTTAC CTTTGCAAATGAGAAGTCAGTTGAACAACTTTTCTCTGGGTGCCCTGTCCTGGAAAAGTTAACCTTGTTTATTTGTAATT GGTCTAACATCAAGCAGATCAGCATAACAACTCCAACATTAAAGATATTATCCATCTTTTCGGGCCTGGGAGTTGATAAG CTCTATTCTACTGTCAAGATTGATGCTGTGAACCTCTTATATTTCAGTTTCACAGGCTATCTAGTTGTGGATTTTTCCCT TGTTAACCTGGCCTCCTTAGTTGATGCACGTATTGAGTGTCTCTATCCATTATTGCAAAAAATTATTGGTCCCCGTGCAA TTAGACTAATGAGTCAACTTGGTAGCATCAAATCTCTTAGACTATCAAATGATACACTTCAGGTATGTTTAACTACTTAC TGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0150200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVGLKSSPDSHKLQRHNVGDMKDMISNLPDGILHYILSLLPTKEAIRTSILAKRWKYLWTDLSIFDFENDIPMASMKEDQ KQKSIHCLLDQVHGLLCHSNCVKRLSVMFFGVAVDADRVNSIIYGVAKHKIEKLKLSVLVKPPFVLPNCFSASKSLNKLH LDLGCVVDFPSGIHFPSLKTLKLSRVTFANEKSVEQLFSGCPVLEKLTLFICNWSNIKQISITTPTLKILSIFSGLGVDK LYSTVKIDAVNLLYFSFTGYLVVDFSLVNLASLVDARIECLYPLLQKIIGPRAIRLMSQLGSIKSLRLSNDTLQVCLTTY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32212
14 279 266 4.8E-48 –
PANTHER
PTHR32212:SF289
14 279 266 4.8E-48 –
ProSiteProfiles
PS50181
22 68 47 9.603
IPR001810
Gene3D
G3DSA:3.80.10.10
22 318 297 2.1E-25
IPR032675
SUPERFAMILY
SSF81383
23 64 42 1.7E-10
IPR036047
Pfam
PF00646
25 63 39 5.5E-5
IPR001810
SUPERFAMILY
SSF52058
144 313 170 1.12E-7 –
Pfam
PF07723
177 202 26 2.8E-7
IPR013101

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0150200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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