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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0150200 |
| Transcript ID | LotjaGi3g1v0150200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT4G14096.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096; TrEMBL-Plants: tr|G7KDV1|G7KDV1_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi3g1v0150200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20199626..20202513) extracted from Lotus japonicus Gifu genome v1.2.
CAATAATTAAGTATTAATAATGGTTTAGCAGGCAACGTACACCATGACAGAAGCTTTCCAAATTCGAATGAACTGCATTA TTATATTCAAGTGACCGTGATTTTGGTTGATTCAAATTTCCCATTTTTCGCTTCTCTTTCAGTGTTTGATAGGCACACGC TTCTTCAGGTATGAATCATTTCCTTGATATTCCAGTGTATTTTCCTTCTCCAGTTCTAGTTCTGTGTCCTCACCAATTGG TTAGATGAGTTTGCTGTATCCTAGGGAGTTGTCGCATCTCGAGCGAATGAATAAACTCTTGAGAAGTGTCATGTGACATG CCCCATGCAATTGTGTTTCATATTGTATTTTTGATTTCATATCAATGTAATTTTTATTGAGTTCCCAGTGCAATATTTAC AACATAAATATCCCATGAAGCTAGAAGCTTATCTTGTGACTTGTCTGGTTGATAGTTATATCTGTTTCCCTTTTTTCTGG TAGGCGCGACGAGCATATGGTTGGTTTAAAGTCATCACCTGATTCACATAAGCTCCAAAGACATAATGTGGGTGACATGA AAGATATGATCAGCAACTTACCTGATGGTATTCTTCATTACATTCTTTCTTTACTCCCTACCAAAGAGGCTATACGAACT TCCATTTTAGCGAAAAGGTGGAAGTACTTGTGGACTGACTTATCTATCTTTGATTTTGAAAATGATATACCAATGGCCAG CATGAAAGAAGACCAAAAACAGAAATCTATACATTGCCTTTTGGATCAAGTGCATGGACTACTTTGTCATTCTAATTGTG TTAAAAGGCTCAGTGTCATGTTTTTTGGGGTTGCCGTTGATGCAGATAGAGTTAATTCTATTATATATGGTGTAGCGAAG CATAAAATCGAAAAGCTTAAGCTTTCTGTACTTGTAAAGCCTCCATTTGTTTTACCTAATTGTTTCTCAGCTTCTAAATC ATTGAATAAGCTGCATTTAGATCTGGGATGTGTTGTAGATTTCCCTAGTGGCATTCATTTCCCTAGCCTGAAGACATTAA AGCTTTCGCGTGTTACCTTTGCAAATGAGAAGTCAGTTGAACAACTTTTCTCTGGGTGCCCTGTCCTGGAAAAGTTAACC TTGTTTATTTGTAATTGGTCTAACATCAAGCAGATCAGCATAACAACTCCAACATTAAAGATATTATCCATCTTTTCGGG CCTGGGAGTTGATAAGCTCTATTCTACTGTCAAGATTGATGCTGTGAACCTCTTATATTTCAGTTTCACAGGCTATCTAG TTGTGGATTTTTCCCTTGTTAACCTGGCCTCCTTAGTTGATGCACGTATTGAGTGTCTCTATCCATTATTGCAAAAAATT ATTGGTCCCCGTGCAATTAGACTAATGAGTCAACTTGGTAGCATCAAATCTCTTAGACTATCAAATGATACACTTCAGGT ATGTTTAACTACTTACTGATCATCTTCATTTTTTAACTGTATAATAGCTATTGGCGATGTTTGCCTTAACTATGTGTTTA TTATATTTGTTTCATATTTCCTCAATAATAGCTGTTGTATTTCCTACATAAGTTTACTTTTATTTCTTTTACTAGTGTCT TTCCTATGAAAAATATACTCTCCATCTCCTTCCTTTGTTCAACAATTTGACTCGTCTCCATGTGGATTCGGGAACTTGGG AGTTCACTAATGAAGCGCTAATGGACATTCTCCAAAAGACACCTAAATTGGAAGTTCTTCATATTCCAATGGTACATCTT TTATCCTGCTTCAATACTTGCATCTGCTATGTTTCAAGGCTAACTTGTTTATTGATCTTATGTAGGGATTTGACCCACAG ATCTGCATGGATGGTGAAGACTGGATATTGAACTCAGTTCCTTGTTGTTTCAAATATAGTCTCAAATCATTTTCTATTTC ATATTTTGATGGGGGTGAAGCTGAAATCCAGTTGCTGAAGTTTTTGTTAGAAAATGCTACAGTTTTAGAGGAGATCCGGA TATTCTGTTCGAAAACTTTATCTTCTAATTTGAAGAAGCAGGCTGAGATCAGCAACCAGTTGCAACCTGTAGTCCTGGAA AATTGTGTCATTAAGTTTCAGTAGAACTTCTTTCTTGTGTTTTGTTGTACTGTTGTTGCTGCTACTACTACTACTGAATA TTGGATAAAATTGACTAGTGTTAACATTTTCAGATTGCATTGACTAGATTCTATTGATCAATAGTTATGTTTCTTCATAA TCTGCTTCAGATTATTTTTTTCCCGATGCATATTAGGAAGTGGTCCCAAAATATCCCCTTCAGTGCCAGAAGATCATATT TTAGTGAGTATGATTCGTAAAAGTTGTGATTGAGAGACAGACTTGAAGAAACACAGTTTAGAGAAGAATACAAATGATGT GTTCTCTGAAAGATAATATATGTGGTTTTCTAGAGAAGTTGCACCCTAAATGTTCAATAAAATGTGTGATAAAAGGGGTG TCTTCCGGTGGATGCATTCTTGTCGAAGCAACAAATCTACTTTTGTTGGTAATTACCAAGTTAATCTTTAATTGAATTCT GTGTATTGTTTACTTGAGAGCTTTGAGATGAAATGGTTTTCATTCATCACCCTCCAACATGAACTGAATGTGACCTTTAA TACTGAGTGCTGCATTAGGAAAATCAAGATGGAATGTTTCGAGCGGCTGCATTCTGCCATAGAGGCTTCAACAAGTCAAA TGTGTTTGGTCATGGTAGCTTTGAACTTGTGCATCAGGGAGTGCTCATTGATGACAGGAAAGAAAGGTGAAGAATTTAAA CTAGACTTTAATTTCTTCTTAGAACATATAAACCAGCCTTTTCTCTTTTATAGTAATTGCTGTAAAGAACTTGCATTGTT CTCTGCTG
CDS sequence (LotjaGi3g1v0150200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGTTTAAAGTCATCACCTGATTCACATAAGCTCCAAAGACATAATGTGGGTGACATGAAAGATATGATCAGCAA CTTACCTGATGGTATTCTTCATTACATTCTTTCTTTACTCCCTACCAAAGAGGCTATACGAACTTCCATTTTAGCGAAAA GGTGGAAGTACTTGTGGACTGACTTATCTATCTTTGATTTTGAAAATGATATACCAATGGCCAGCATGAAAGAAGACCAA AAACAGAAATCTATACATTGCCTTTTGGATCAAGTGCATGGACTACTTTGTCATTCTAATTGTGTTAAAAGGCTCAGTGT CATGTTTTTTGGGGTTGCCGTTGATGCAGATAGAGTTAATTCTATTATATATGGTGTAGCGAAGCATAAAATCGAAAAGC TTAAGCTTTCTGTACTTGTAAAGCCTCCATTTGTTTTACCTAATTGTTTCTCAGCTTCTAAATCATTGAATAAGCTGCAT TTAGATCTGGGATGTGTTGTAGATTTCCCTAGTGGCATTCATTTCCCTAGCCTGAAGACATTAAAGCTTTCGCGTGTTAC CTTTGCAAATGAGAAGTCAGTTGAACAACTTTTCTCTGGGTGCCCTGTCCTGGAAAAGTTAACCTTGTTTATTTGTAATT GGTCTAACATCAAGCAGATCAGCATAACAACTCCAACATTAAAGATATTATCCATCTTTTCGGGCCTGGGAGTTGATAAG CTCTATTCTACTGTCAAGATTGATGCTGTGAACCTCTTATATTTCAGTTTCACAGGCTATCTAGTTGTGGATTTTTCCCT TGTTAACCTGGCCTCCTTAGTTGATGCACGTATTGAGTGTCTCTATCCATTATTGCAAAAAATTATTGGTCCCCGTGCAA TTAGACTAATGAGTCAACTTGGTAGCATCAAATCTCTTAGACTATCAAATGATACACTTCAGGTATGTTTAACTACTTAC TGA
Protein sequence (LotjaGi3g1v0150200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGLKSSPDSHKLQRHNVGDMKDMISNLPDGILHYILSLLPTKEAIRTSILAKRWKYLWTDLSIFDFENDIPMASMKEDQ KQKSIHCLLDQVHGLLCHSNCVKRLSVMFFGVAVDADRVNSIIYGVAKHKIEKLKLSVLVKPPFVLPNCFSASKSLNKLH LDLGCVVDFPSGIHFPSLKTLKLSRVTFANEKSVEQLFSGCPVLEKLTLFICNWSNIKQISITTPTLKILSIFSGLGVDK LYSTVKIDAVNLLYFSFTGYLVVDFSLVNLASLVDARIECLYPLLQKIIGPRAIRLMSQLGSIKSLRLSNDTLQVCLTTY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 279 | 266 | 4.8E-48 | – | |
| PANTHER | 14 | 279 | 266 | 4.8E-48 | – | |
| ProSiteProfiles | 22 | 68 | 47 | 9.603 | ||
| Gene3D | 22 | 318 | 297 | 2.1E-25 | ||
| SUPERFAMILY | 23 | 64 | 42 | 1.7E-10 | ||
| Pfam | 25 | 63 | 39 | 5.5E-5 | ||
| SUPERFAMILY | 144 | 313 | 170 | 1.12E-7 | – | |
| Pfam | 177 | 202 | 26 | 2.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0150200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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