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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0152600 |
| Transcript ID | LotjaGi3g1v0152600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription repressor; TAIR: AT1G06920.1 ovate family protein 4; Swiss-Prot: sp|O04351|OFP2_ARATH Transcription repressor OFP2; TrEMBL-Plants: tr|I3S027|I3S027_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0152600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:20611617..20613978) extracted from Lotus japonicus Gifu genome v1.2.
CAATCATCCAGTGTCATTCACCACCTCTGCCCCACTCAATTTTCCTTTACGCCAACCCTTTCCTTCTCCTGTGGACCCAT TGCCTACTACCATGTCCAAAAAACCTTTTTATTTATATCCCTACTCCACCATGAGTGCAAACACAGACTACTCTCTCATG GAGATGGAGTTATCTGATATCTGAGCCAGAACAACCCCATTCACCACAGTCACAATTCACCAACACAACACACACACACA CTCACTCACTCACACAAACATATAGAGTAAGAGTGCATTAATGGGGAATTACAGGTTCAAGTTATCAGACATGATTCCCA ATGCCTGGTTTTACAAGCTGAAAGACATGGGGAGAGGGAACAAGCAAACACACACTCTTTCCAGAAACAAGAAACAATCC TTACCATCCTCAACCACACAATCATCAAAACCAAAACAAACCCACCATTCCAATCCCAGAAGGTCTTACTATTTCACAAG AGAGGTTAACCCTTACCCAACCACCTACAAACCCAACAATTCCCCTGAACCTGAACCTGAACCACCCAGAAAATCATCCA AACAGAGAACCAGAAGAAGAAGAAGAAGAACAGCTTCTTCTGCTACCCCAAAGCTTGTTACCTCAGCAGGTTGTAACTGC CGCCCCACCATCGAATCTGTTTGGATCAAATCGAATTCCCCACCAGGACACTCTTCATCTCATTCACCATTTGATGATAG CTCTGCTGAAACAGAGTCCCCTGACCCAGAATTCAGAACAGACCGTGTTCTTCTTCCCTCTGAGTCATCATCATTTGATG AAATGGTTTCCTTATCCACCTCCTGTGCCTGCACCAGAGACATCGTTATCGATGTTGAAGGGAATTCTCTTGCCAGAAAA GATGACAAGCTTGAAGGCTGTGACGATGATGATGATGATGATGATGTTGATGCATTTTCAGAGCTTGTAGAACTTCCTCC AATCATAACCAAAACACCCAAAATCAACAACTTTGTGAGCGATTGCAGGAAGAAAGAACCAAAATCCAGAAGCAGAATCG CCAAAACAAACGAACAAGGGTATCTGAAGGTTCGAATTGTGAAGGAAGATTCAACTGCAGCATCAGTGAAAGGACAGAGA AGCACTGGCTCTGTTTTTCGGAGATTCTCCTCTGCTTCTCACATGGCAAATTCTCCGGGAGTGAAACTCCGGGTCAACTC GCCGAGAATTGCTAGCTTAAAGGTCCACAACTACTCTCATGGCAGGTCGTCGACGACTGGCTCCCGGAGAAGCTTCTCCG GCAGCTGCGCCGTCGTGAAGTCGTCGTTCAACCCGCAGAAGGATTTCAGGGAGTCAATGGTGGAGATGATCGTGCAGAAC AACATCAGGGCGTCGAAGGACTTGGAAGATCTTCTTGCTTGTTACCTTTCTCTGAATTCAGACCAGTATCATGAACTCAT CATCAAGGTGTTCAAGCAAATTTGGTTTGATTTGACAAGGTAGAGAGAGAGAAATGTGAAACCTCTGTTGCATCTTCTTC TATCATCTCCTTCACATTCTAACAACCTCTCCCTTAGACAAAATTCTTAATCAGTTAGTTTGTTCATTAAATTTTCTTAA TCTTCATATGTATGTAATAATAATTACAAATAATCATAATAATTATAGTAATATATCTTTGGTTCCCTCTAATGACTATG TTTAGAAAGTTGTGGTTTTCAATTCAAAATTCCAAATTGAGTTAGAACATGTTTGGATTTGTTGGAACGGATTCGATTGA CTCATGCCGATCAACCCATCTCCGATCATTACCATCCCCACCCTTGTCTAGCTGGCTCTCACAACCGATCGCCAAAACGA GGGCGCATATATCACTTCACTACAACCGATTTGGTCGGATTCGTCCAATCAGGATATACCGTAGATTTTCATGGTGGGAG GAGAATTGATTTTGGGAGAAGCTACTCTTGACACCTTTTGTGATAGTAAAATTGAATTTGGAATATCTATAATTCTCAAG TCAGAATCAATTCTTTCAAGAATTGAGTAATTTCTGAGTCCGTCAGTACTTCTGAGTCCCAAAATCGATTTTAATGAAAA AGAAGTTGAAGCAAATGTAATTGATGTAGGTCGAAATTTTTTCTCTCATAAAATGGGATTAGTGAATTTGTTTCAAAAAG GGGATTCATTTTTCATTTAAGTGATGCAGAAACTTCATAAAGATTGTAGGGACAGGTCATGGGCATGTAAACGTGTGCAA AATTCTAGCTAGTCACAGAGATTGTCTATTTCCTTTCCTGAAAGGCAAAATATCTGGGGCGTGTTGGTTTTCAGTCATCT TTTAAAAGAAAGTTTAGAGCAGTAAATTTGCATCAGAAATTC
CDS sequence (LotjaGi3g1v0152600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAATTACAGGTTCAAGTTATCAGACATGATTCCCAATGCCTGGTTTTACAAGCTGAAAGACATGGGGAGAGGGAA CAAGCAAACACACACTCTTTCCAGAAACAAGAAACAATCCTTACCATCCTCAACCACACAATCATCAAAACCAAAACAAA CCCACCATTCCAATCCCAGAAGGTCTTACTATTTCACAAGAGAGGTTAACCCTTACCCAACCACCTACAAACCCAACAAT TCCCCTGAACCTGAACCTGAACCACCCAGAAAATCATCCAAACAGAGAACCAGAAGAAGAAGAAGAAGAACAGCTTCTTC TGCTACCCCAAAGCTTGTTACCTCAGCAGGTTGTAACTGCCGCCCCACCATCGAATCTGTTTGGATCAAATCGAATTCCC CACCAGGACACTCTTCATCTCATTCACCATTTGATGATAGCTCTGCTGAAACAGAGTCCCCTGACCCAGAATTCAGAACA GACCGTGTTCTTCTTCCCTCTGAGTCATCATCATTTGATGAAATGGTTTCCTTATCCACCTCCTGTGCCTGCACCAGAGA CATCGTTATCGATGTTGAAGGGAATTCTCTTGCCAGAAAAGATGACAAGCTTGAAGGCTGTGACGATGATGATGATGATG ATGATGTTGATGCATTTTCAGAGCTTGTAGAACTTCCTCCAATCATAACCAAAACACCCAAAATCAACAACTTTGTGAGC GATTGCAGGAAGAAAGAACCAAAATCCAGAAGCAGAATCGCCAAAACAAACGAACAAGGGTATCTGAAGGTTCGAATTGT GAAGGAAGATTCAACTGCAGCATCAGTGAAAGGACAGAGAAGCACTGGCTCTGTTTTTCGGAGATTCTCCTCTGCTTCTC ACATGGCAAATTCTCCGGGAGTGAAACTCCGGGTCAACTCGCCGAGAATTGCTAGCTTAAAGGTCCACAACTACTCTCAT GGCAGGTCGTCGACGACTGGCTCCCGGAGAAGCTTCTCCGGCAGCTGCGCCGTCGTGAAGTCGTCGTTCAACCCGCAGAA GGATTTCAGGGAGTCAATGGTGGAGATGATCGTGCAGAACAACATCAGGGCGTCGAAGGACTTGGAAGATCTTCTTGCTT GTTACCTTTCTCTGAATTCAGACCAGTATCATGAACTCATCATCAAGGTGTTCAAGCAAATTTGGTTTGATTTGACAAGG TAG
Protein sequence (LotjaGi3g1v0152600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNYRFKLSDMIPNAWFYKLKDMGRGNKQTHTLSRNKKQSLPSSTTQSSKPKQTHHSNPRRSYYFTREVNPYPTTYKPNN SPEPEPEPPRKSSKQRTRRRRRRTASSATPKLVTSAGCNCRPTIESVWIKSNSPPGHSSSHSPFDDSSAETESPDPEFRT DRVLLPSESSSFDEMVSLSTSCACTRDIVIDVEGNSLARKDDKLEGCDDDDDDDDVDAFSELVELPPIITKTPKINNFVS DCRKKEPKSRSRIAKTNEQGYLKVRIVKEDSTAASVKGQRSTGSVFRRFSSASHMANSPGVKLRVNSPRIASLKVHNYSH GRSSTTGSRRSFSGSCAVVKSSFNPQKDFRESMVEMIVQNNIRASKDLEDLLACYLSLNSDQYHELIIKVFKQIWFDLTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 399 | 399 | 4.6E-113 | ||
| Pfam | 1 | 53 | 53 | 3.9E-19 | ||
| PANTHER | 1 | 399 | 399 | 4.6E-113 | – | |
| MobiDBLite | 27 | 76 | 50 | - | – | |
| MobiDBLite | 27 | 117 | 91 | - | – | |
| MobiDBLite | 129 | 161 | 33 | - | – | |
| MobiDBLite | 129 | 149 | 21 | - | – | |
| TIGRFAM | 337 | 399 | 63 | 5.4E-23 | ||
| ProSiteProfiles | 338 | 397 | 60 | 18.521 | ||
| Pfam | 342 | 398 | 57 | 6.7E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0152600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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