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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0156200 |
| Transcript ID | LotjaGi3g1v0156200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Branched-chain-amino-acid aminotransferase-like protein; TAIR: AT5G57850.1 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; Swiss-Prot: sp|Q8L493|DAAA_ARATH D-amino-acid transaminase, chloroplastic; TrEMBL-Plants: tr|I3SWY2|I3SWY2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0156200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21321237..21323173) extracted from Lotus japonicus Gifu genome v1.2.
AGTCAAACGGATCATGCTCTGTCTTTGGTTTTGGTTAGATTATACTTAGTTTGAGAGGAAAGGAAGGAAGAGGAAGGGTT TCACTGTACTTGCATTTATTTTTGTCAAATACTGAAATTGCTTAATCTGGAAGATTTGCATAGTAATTGAACTTGAACTT GAACATGAACATGCATAGGATGCTGATAACTTATTACTTGCAGCAGTTTTGTTTGGACAAAATTCACATTTAATTTCATA TGGTTTTGTATTATGATCCATTAAGATTTTGAAATTTCATTGGGGTTTGCATTGTTCAGTTACTTGAAAAGCTTCATGAA AGATGGAGTTCAGTGGAGAAACTACCATACCCAGCTATGTACTCTAGTATATATGGTGGTATCATACTTGATCCAGCAAT GATGGTAATCCCCATTGATGATCACATGGTGCATAGAGGGCATGGGGTCTTTGATACTGCTATTATTTTAAATGGGTAAT GCTAACTTATGCTTTTGCTCCATACAAATTAATATCTTTGTATAAAAGTATTCAGATTTTTTGAGTTTGAAACATTTTTT TCTGATCTTGGTTTATATATTATTTGTTCTCACCAGATACCTCTATGAGTTGGATGTTCACCTTGACCGTTTCCTAAGGT CAGCCTCCAAAGCCAAGATAAGCTCTCCTTTCTCTAAGTCGACGCTTCGCAGCATTCTAATACAACTAACTGCAGCATCC AAATGCAAGAAAGGAACTCTAAGATACTGGCTGAGTGCAGGTCCTGGGGATTTCTTGCTCTCTTCATCAGGATGTCCAAC ATCTGCATTCTATGCAGTAGTAATTGATCAAGAATTTTCCCAGTGCAAAGAGGGGGTTAAAGCGGTTACTTCCAGCGTAC CAATGAAGCCGCCTCTATTTGCCACAATGAAAAATGTGAATTACCTTCCTAATGTCCTTTCAATAATGGAAGCAGAAGAG AAAGGAGCATTTGCTGCTATATGGGTTGATGAGGCTGGTTATATTGCTGAAGGTCCACATGTGAATGTTGCTTTTATTAC TCAAGAAAAGGAACTTATCATGCCTTCTTTTGATAACATCCTACGCGGTTGCACTGCGAAAAGGCTTCTTGAGCTTGCAC CCAAGTTGGTTGATCAAGGGCTTCTTAAAGGTGTAACAAATAAAAATCTGACTGTGGAGGAAGCTAAAGCTTCTGCTGAA ATGATGTTTGTAGGAAGCACACTTCCTGTGTTGCCTATCATTGCGTGGGATGATCAACCTATTGGCGATGGTAAGTAATT TGTTGAGAAGTTTTACATTGACTAGAAATGTAGCAAATTAACTAAACTTGCTTTTGGGGTAGAGTTAAGTATAACCTGAA CTTTTATAATCTGCTATCAGAGTGTATCCTAGATTCATTGATCAGAGAGCACCCATATATAGGCCACATGCAAATGTCAA GTCGTGCAAATTCCACTCAAGGGTGTGTTGAGAAGTCCTACATTAATTACATATATGACTAAATAAGTATTTATAAAGGG TAGCGTAACCTGAATTCTAGTATAATTAGCCGCATAAATTCTCTGGTATTGATCTGTCCTTGTTTGGTGTGAATCCTTAC CTTGTATGATTTCTTTCATTCTTTTTTTCTCTATTGATGCACATAAACATTTGTTATACTTTGTTTTGATAGAATCAATG CTTGGATCATTTTGAGCCATTTACTTTTATCCGTCATAATCAATAGGGTACTAATAATCTACAAAATTAGCAAAATATTG TTATTATATCTATGTATAATTCTGCTGAGTCTCTCTTTATCCAAGTGTCATTTTTATTTATTCAATTGACTATGTTTTAC AGGAAGGGTTGGAGAATTGACAATGAAACTCTCAGATTTGCTATGGGATGATATGGTAGCTGGCCCTGACACACAGAGAA TAGCAGTTCCTTACGTC
CDS sequence (LotjaGi3g1v0156200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACTCTAGTATATATGGTGGTATCATACTTGATCCAGCAATGATGGTAATCCCCATTGATGATCACATGGTGCATAG AGGGCATGGGGTCTTTGATACTGCTATTATTTTAAATGGATACCTCTATGAGTTGGATGTTCACCTTGACCGTTTCCTAA GGTCAGCCTCCAAAGCCAAGATAAGCTCTCCTTTCTCTAAGTCGACGCTTCGCAGCATTCTAATACAACTAACTGCAGCA TCCAAATGCAAGAAAGGAACTCTAAGATACTGGCTGAGTGCAGGTCCTGGGGATTTCTTGCTCTCTTCATCAGGATGTCC AACATCTGCATTCTATGCAGTAGTAATTGATCAAGAATTTTCCCAGTGCAAAGAGGGGGTTAAAGCGGTTACTTCCAGCG TACCAATGAAGCCGCCTCTATTTGCCACAATGAAAAATGTGAATTACCTTCCTAATGTCCTTTCAATAATGGAAGCAGAA GAGAAAGGAGCATTTGCTGCTATATGGGTTGATGAGGCTGGTTATATTGCTGAAGGTCCACATGTGAATGTTGCTTTTAT TACTCAAGAAAAGGAACTTATCATGCCTTCTTTTGATAACATCCTACGCGGTTGCACTGCGAAAAGGCTTCTTGAGCTTG CACCCAAGTTGGTTGATCAAGGGCTTCTTAAAGGTGTAACAAATAAAAATCTGACTGTGGAGGAAGCTAAAGAAGGGTTG GAGAATTGA
Protein sequence (LotjaGi3g1v0156200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSSIYGGIILDPAMMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSASKAKISSPFSKSTLRSILIQLTAA SKCKKGTLRYWLSAGPGDFLLSSSGCPTSAFYAVVIDQEFSQCKEGVKAVTSSVPMKPPLFATMKNVNYLPNVLSIMEAE EKGAFAAIWVDEAGYIAEGPHVNVAFITQEKELIMPSFDNILRGCTAKRLLELAPKLVDQGLLKGVTNKNLTVEEAKEGL EN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 241 | 241 | 1.9E-141 | – | |
| PANTHER | 1 | 241 | 241 | 1.9E-141 | – | |
| Gene3D | 1 | 115 | 115 | 2.0E-30 | ||
| SUPERFAMILY | 6 | 238 | 233 | 7.19E-46 | ||
| Pfam | 30 | 236 | 207 | 7.1E-37 | ||
| Gene3D | 116 | 242 | 127 | 1.8E-25 | ||
| Coils | 223 | 242 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi3g1v0156200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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