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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0157600 |
| Transcript ID | LotjaGi3g1v0157600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Seed maturation protein/ Late embryogenesis abundant protein; TAIR: AT3G22500.1 Seed maturation protein; Swiss-Prot: sp|P09444|LEA34_GOSHI Late embryogenesis abundant protein D-34; TrEMBL-Plants: tr|G7ITI2|G7ITI2_MEDTR Seed maturation protein; Found in the gene: LotjaGi3g1v0157600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21513364..21516073) extracted from Lotus japonicus Gifu genome v1.2.
AATTAATCAAAACCCTTTTCGGTGAGTTGTAGATATAACCATTTAACTCCATCGTTTACACTTCATAAGTGGTTAATGCT GAAGAAAAAGAAAGGAGAATAATCTGAATTAGCACAAGCACACAAGTCATAGCACAATGAGCCAGGAGCAACCACGAAGA GGTGAGCGTGAAGCGATCAAGTATGGTGACGTGTTTAACGTGTCTGGAGAGTTAGCATCAAAACCAGTAATGCCAAGAGA CGCTGCCATGATGCAATCCGCGGAGGACCAAGTACTGGGTCAGATTCAAAAAGGTGGTCCTGCCGCAGTGATGGAATCCG CCGCTGCAAAAAACGAGAGAGCTGGTCATGTGAACCACCAGGCCGCAACAAAATTCGCAAGAAACCAAGGCGTTTATGTG TCGCAGACAGACAATGGGGTCACTGAGACCCTAGGTGGACAGGTGATTGATTGGTTTTTTTTATAGGCAAATGTTCATTG TTATGAGCGATCCAAATGATTAATTGGTAACTTTAAACATGCACTGCTTTGGCCTTTTGCTAGCTCGAGATTTAATTTCA TGCTGCAATTAATCTCTACTTTATCATAATAATAATGATAAAAAAAGTATAGTTTCAAAACAAAAGGATAAAAAACTACA AATTAACCAAATCATAGCAGACATTTTCTGTTTGAGAAAATAGTTGATCCTTTAGAATTACAAGGAAGAACTAGTTGATC AAATTAGCTATTTTGAATAATTTATTTAGAAAAAAAATCACACAACTATTTCCTGATTCATTAGATATTAAATTAATTAT AAATTTTAAATTGAGATATGAGCATATATTTACTGTGTCTCCTTATTTATTTAATTTTCTTATTGCTGAATTGCTATTTT GAATAATTTGATTTTAATTATTTTAAATAATAATTAATTAAAAATCTGAAACAAACATTTGAGGATATATATATATATAT ATTTATATATATATATATAAAATGTATCCAACAATTATGTATAATTAAAGTTGTTTTCGGTGTTGAATTCAACTCATCAT ATTCATTCATTTTGTTTTTCTACATTTTTTTTTACATGGAGGGCTACGCCCCTTTCTACATCTTTTAAATATGACAAATT GACACTTGGTAAAAAAAATTCACCCAATAACTCTAATACTAAAATTATTTTAATTTTTTCTAAATTTGTTAATAACTTTA TACTAAAGTACCACTAAATTGTCCTAAAATGACAGCTCAAGTGGTAAGAGTTGATGAAAATATGAGTTAGGAGACGAGTG TCCAGGGATCAACCCTTGAAAATTGTACTCCCTCCGTTCCAAAATGATTGTTGTTTAAGGTAATGCACATAGTTTAAGAG CTCATTAATTGATATAATATTTGACTGAAACAACCCTATTTAAAGTTGAGTTATATAAAGAGAGAGAATCGTAATTATTG GTTAAGTGATTGGTGGGCATTGTGTTTGGTGAGAATTGAAGGTGGTAAATGAGAGATACAATATTAAATGAGGGTGTATA TGGAAGAATATGTGACAAATAGTCTTGGATTTCTAAAACAACCACCATTTTGAAATATATGTGAAAAGTTAAAATAACAA CCATTTTGAACGGAAGGAGTAGTTTATAATTCTGATGTTAAAAAATAGTACCACTAAATTAATAAAGAACATTTACTAGT TCATTTCTTGTTCTTAATCCAATAAATGTTCCTTTAGTAATTGTGAAACTTCCTTTCAGCAATATCTTTCTATTTTAATT CAAGATGTTTCTAGTCAATATTATCTTTCTATTTTAACATGTATAGGATTCTTTTTCTGTTTTGCTTGCACAGGTTCTAG GGCAGTTTGTGAAAGATGAAGACGTGGTCAAGGGGACCATGGGTGGCGAGGTCGTTGGATCTGGAGTGAATGAATTAGGT GCTGATTACTTTGCCTCTGTGCAAGCTCCTAAAGTTAGAGCAATCGAAGACTATGATTTCATAAGTAACCAACAGGATAC TGCTCTAAACCCTCGGTTTTCCGACAATCAAGATAAGAACATCGACTTTAATGTTTCAAAGGTATGTAGTGTATTGATAT TTATTGCTTCAATTTGTTAACTCGTACATGGGCTTATTAAGGATTTTATCGTTGTGGGCCAAAATAAAATATGAAAAAAA TGATTGTAGCCTCTACCAGACCCTTTAATACCCCTTTGAGCTCATTCAACATATTATATAAATATGTATATATTGAACTT TTTTTATGACGAGTATATATTGAACTTGATATTGATGAGATTGACATTCGAATTTTTTGGAATAATGTTTCAATTTATGC AGGATGAAAACCCTAAAATTATAAATAGCGTACCTGGAGGCATGGGAGCATCCATGGCGACCGTAGATCAATTTAAGAAA AATAAATGAGTTCAAATCCTTTTGTTTTTTTGTATGTTTTTAATTTCACAGCAGTATCTTAGTAATACTTTTTTTATGCA AAAATATATGTGGTTAATAAAGTCTTCCTTTCTTTTTCTACGCACTTGGTGATGTAGTTTTACAAAAGCATAATGGAATA AGTCTTATTTTATGTTTCTTTATGTCATATGGTGATAACATAATGTGATTAGGTTTATGCTTACTTTCTTTAAAGAAAGA ACTAATCTTATTCATGTATCATCCATGAACTGGGCGAGAATAGACTAATGCGTAAGGAGAATGAATTGGA
CDS sequence (LotjaGi3g1v0157600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCAGGAGCAACCACGAAGAGGTGAGCGTGAAGCGATCAAGTATGGTGACGTGTTTAACGTGTCTGGAGAGTTAGC ATCAAAACCAGTAATGCCAAGAGACGCTGCCATGATGCAATCCGCGGAGGACCAAGTACTGGGTCAGATTCAAAAAGGTG GTCCTGCCGCAGTGATGGAATCCGCCGCTGCAAAAAACGAGAGAGCTGGTCATGTGAACCACCAGGCCGCAACAAAATTC GCAAGAAACCAAGGCGTTTATGTGTCGCAGACAGACAATGGGGTCACTGAGACCCTAGGTGGACAGGTTCTAGGGCAGTT TGTGAAAGATGAAGACGTGGTCAAGGGGACCATGGGTGGCGAGGTCGTTGGATCTGGAGTGAATGAATTAGGTGCTGATT ACTTTGCCTCTGTGCAAGCTCCTAAAGTTAGAGCAATCGAAGACTATGATTTCATAAGTAACCAACAGGATACTGCTCTA AACCCTCGGTTTTCCGACAATCAAGATAAGAACATCGACTTTAATGTTTCAAAGGATGAAAACCCTAAAATTATAAATAG CGTACCTGGAGGCATGGGAGCATCCATGGCGACCGTAGATCAATTTAAGAAAAATAAATGA
Protein sequence (LotjaGi3g1v0157600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQEQPRRGEREAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGGPAAVMESAAAKNERAGHVNHQAATKF ARNQGVYVSQTDNGVTETLGGQVLGQFVKDEDVVKGTMGGEVVGSGVNELGADYFASVQAPKVRAIEDYDFISNQQDTAL NPRFSDNQDKNIDFNVSKDENPKIINSVPGGMGASMATVDQFKKNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 139 | 139 | 2.9E-46 | – | |
| PANTHER | 1 | 139 | 139 | 2.9E-46 | ||
| Pfam | 14 | 69 | 56 | 9.2E-19 | ||
| MobiDBLite | 164 | 192 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0157600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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