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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0159500 |
| Transcript ID | LotjaGi3g1v0159500.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT5G60450.2 auxin response factor 4; Swiss-Prot: sp|Q9ZTX9|ARFD_ARATH Auxin response factor 4; TrEMBL-Plants: tr|D3GBU8|D3GBU8_LOTJA Auxin response factor; Found in the gene: LotjaGi3g1v0159500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21756471..21763083) extracted from Lotus japonicus Gifu genome v1.2.
AAGTGAATGAAAAAATTATTAATAAAGAAGAAAAGATAAAGCAAAGAAGAGGGTGAGAGAGTGTGGGTTCTGTACTGTCT TAGCCTGTCCCCCCACCCAACACACACACACACACACTCTCTCTCTCTCTAACACTTCAACCCCAAAAGCCACTACCACT TTGGCTTTTGTTTCTGTGCTTCCTAAGCATATGTCTATGTCTCCTCCCTCAGCTCCCTCTTCTCACTACTACCTGCAAAT GGAGGAAGAATCAAACTTTGAATTTCTTGATATTATTTGATGCACTTTTCTTAAACCATGTTTTGTTTTCTGTTCAACCC TCCTCTGTTTTCACCTTTGTGGTGGACTGGTGTCCCTTCCTTTTTCATGATTTGACCTCATTTCCATTTTGTTACAGTCT CAGCTTTCTCAGTTTCCTCTTTTTAAAATCCACTTGATTGCACTGCACTCTCTTGAGTCTCTTCCTTTCTCCTTTACCTT CTTTTTCCATTTTTTTAATGTTCTATTTGGTTTCCATTTGAATCACATAGCAAGTAACTAACTACACTTGGAGTGTTCAT GGAAATTGATCTGAATGATGCAGTGACTGAGGTTGACAAGAATGCATATTGCAATGGGGACTGTGAGAATTGTGCTTCTT GTGTTTGTTCTGGTTCCTCTTCAGCAATTGTGTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCCCTTACT TCCCTACCAAAGAAAGGGAATGTGGTAGTCTATTTCCCACAAGGCCACTTAGAACAAGCTGCATCTTTCTCTCCCTTTTC TCCATTGGATGTTCCCACCTATGATCTTCACCCACAAATCTTCTGTAAAGTTGCCAATGTTCAACTACTTGTGAGTACTT AAACTCATTGAACTAAGCTCTTAGATTGAATTGTATCTGCTTAATTCAACTCCTTTTTGTTGCTTTTGTTATTTGGTTTA GGCTTAATTGTCTTCTTTTTTGTTTTTATGTTTTTTCTCCATCAACAGGCTAATAAGGAGAATGATGAGGTTTACACCCA AGTTACTTTGCTTCCCCAGGCAGAGGTTGGATTTTCATTTTGTATAGTTATTTCTGTTTTGATGCATCTTCTTTAGTTAA TTTTGGTTTGAGTTTCTTCTTGGGAAATAGACAAGTAAAGAATTTGGAACCCTGTTGTTTTGAAATGTTATATGACGCAA CAGCAAGATAAAGTAACTCTAATAGCATGTTTGGATTAGCTCATATTTTCTCAATAATCAATTATGGCATCCAGAAGCTA CTCACAGAAGCTTTTCTCTATAATTGGTTTTGGCTTCAGAATCAATTGTAGAATGATTTCCAAACATGCACTAAATGTTG GGTTGTCTTCAGTTAGAAGGAATATATTTGGAGGGCAAAGAGCTTGAGGGAGTGGGAGAAGATGTAGAGGGAAATGGAAA AACACCTGCAAAATCAACCCCTCATATGTTCTGCAAAACACTTACTGCCTCTGATACCAGCACTCATGGGGGCTTCTCTG TTCCTCGTAGAGCTGCTGAAGACTGTTTCCCTCCTTTGGTATGACACCAAGATCAAGTTTCCAAGCATAATTTCTAACAT AAATATTCAGAATTTTTAAAGGTGATCAATTCTGTTTATTTTCACTGCAGGATTATAAGCAGCAAAGACCCTCTCAAGAG CTTGTTGCAAAAGACCTGCATGGTGTTGAGTGGAAATTTCGCCATATTTATAGAGGTAACCATAACAGAGAAACTCTGTC TGGTTTGGCTTCATATATTAACTATAAGTGATACAGGAAGTCCATGTGGTCATTTTTGAAGGTCAGCCGAGGCGGCATCT GCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAAGCTTGTTTCTGGCGATGCAGTTCTCTTTCTAAGGTAGGTCT GTGCGCGCGCGCGTGTGTGTGTGGAACTGGGGTTTTTTTTACAAATGGCATTGATTTCTATAAGTTTGATTTTTTTTTTT AATCTTCTTACAATTAATATCATACAGCCATTTTTACAACAAAGTAATATCAGCTGCCAAAAAAATATTTGGATTTGATC AATCTTGTCCTTTTATTGGAACGGTCATGTATCATTTTGTTGATTATTCATAATAAGAAGCTTCTTGTCATGGAGATGGT AAGGTACCAAACTAGCAAAAGGAATATCTTGTTTTAGAACATATCTCTAGACCTCTGATTTCTTTTGTACAAGAGAAACT AGAACTTGTCTTGACAAACTTTAAAAGCAAGAGAGTTGAGTGATAGTAAATAAATAATATATGAATGCCAACTTGAGATT CTACATATTAGTCTCAGAGGAAGAGGAATCTTTCATGCTACTAACTTTTAGATCCCTTACTACTTATGAATCTCTTTGTA GAGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGTTGGT AACCAGAGCTGTTATCCAAATTTCCTTTCTTCCGTGGCTAATGCCATATCCGCGAGAAGCATGTTTCATGTTTTCTACAG TCCAAGGTGATCATTTTTTTTTCACATGTATAGTTCTCTAACTATTTAATCTTTAATTTTCAATTTGTCATGGCTGCTAT AGATGAAATTATTTTAATGTATGCCATGATGGCAGTACGGTACTACCGTGGCATTGGTGAATAAATCAAGGAAGATCTCA AGTATTGTTTTTAGTTTTTACAATCCCTGAGACAGCTTATCTGTCAGTTTCTAATAAACTCTTGGTCACGGAACTTGATT AGATCTTGCATAATGAGAGTCATAGTATTAATTAAGTTGACATTGTAGGTTTAGAGAACAAATGAAGCACTTGGATAACT TTTGAAGTGGTTGTTTACCCTGTATCAACATCTGTTCTGACTTATCACATAGAAGTGCTAGATAGATAAAATAAAGGGTT ATTTTAGCCCACATGTTATTTAGCCCATATGAACCAAGCCACAAATTTGTGACATTTTAATTTGGTATAATGCAGAGCGA GTCATGCAGATTTTGTTGTGCCCTACCATAAATATGTCAGAAGCATCAAGAATCCTGTGACCGTTGGAACAAGATTCAAA ATGAAATTTGACATGGATGAATCTCCAGAAAGAAGGTCGACTACAGCAGTAACTATAAATCGGTAACCATTGTCTTCCAT GAACCCAAAAGAATCTTCTGAGGAATATGACACACTCTTCCTGTCTTGCAGGTGTAGTAGTGGTATAGTCACTGGAATGA GTGATTTGGATCCCTACAAATGGCCCAAGTCAAAATGGAGGTGCTTAATGGTACGTTTTATATTTTTCTTTATGCACAAT TCAGTATGTTTTGACAATATTATCCATTTAGCATTTTGAGCATATGATTTTTGTTAATGAAGTACTGAACAAATGGTGAT ATCTCGATCAACTTAAGCTTGCTTTGATATACAACAGGTTAGATGGGATGAGATTGTTGAAACTAATCATCAAGATAGAG TATCTCCATGGGAGGTTGATCCTTCTGCATCTCTCTCTCCCTTGAGCATTCAAGCTTCACGAAGGCTGAAGAAACCGCGC ACAGATCTGGAAGCTGACTCACCCAATCACCTAATTACTGGTATGAATAATGAATCCTAATACCAAGATAGCCAAAGTAG CATAAATCAGTTATTTCTTACTCAATGCATCCTAATAGTCCTCTCTTCTTTATTCATGTTTTTGGCTTCTTGATTGGAGG GTCGGCAACAGGAGGCAGTGGGTTTATGGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATA CAAGTTTTATGTCACTATATTATGGATGTGACACTGTAACTAAGAAACCAGAATTTGATATCAAATCTCCAAGTCAACCT AATCTTGCATCAACTGGAGTAAGAAAGATTACTGCTGCTGCTGAGGTTATGAGGGTTCACCCTTTTAATTACGCAGGCTT CACGGAAACTAACAGGCTTCCGAGGGTCTTGCAAGGTCAAGAAATATTTCCACTGAGTTCCCTGACTGGTAAGGTTGATT TGAGCCTTGGTGGTTGGGGAAACCCCCATGTCAGTTGCACAAATTACAACCTGCATCAGGCAACCAAACCTAGCTTTCAC TCTTTAAGACCAGAACTTCTTCAAACTGCTTATTTTCCTTTTGGTGATATTCACAAAGCTGGTCAAGGATTCAGCATGTT GTGCTCCAAACCCACCAATTTCCAACGAGAGAATGTCGCGTTTAACGCTCCTTCCACTCAGTCAGGGATCATGAGAAGTG AAGTTGGACTTTCAGACCTGACCATCCCAAATGAGCAGAAGCTACAGGATAATATTTCTGGAACTGCTGCTTCTTTAGGG GCAAACATAAGGATTCTAAATGATGACAATTTCGATGGGAAGGTAAACGCTTGTAAACTATTCGGATTTCCCTTGTCTGG GGAAAGTACCTCCCAAAATTTACAGAACACTGCTAAAAGAAGTTGCACCAAGGTGAGCGATGATAGCAACAGAGTTATAT TGTGATATGACTTTTTATCTTCCTTTGATGATTTGCATATCCATGTAACATAACACTGAATGAAGGTTCACAAGCAAGGT AGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGAGTGAACTAGAGAGGCTATTTAG CATGGAAGGCCTTCTAAGAGAACCTGATAAGGGATGGAGAGTCCTCTACACTGACCGTGAAAATGACATCATGGTTGTGG GAGATGATCCATGGCAGTAAGTATTTGACTCAAATATTTCTTTATTCTAATACTGCTTTGCCATCTTTTAGGAATTTGGC TTACCTACAGTTGGATAGTTCCTAAATTCATCCAGTCAACGAATCTAAGCCATCCAATTTCGAAGATATCTCTACCATCT GACTTTGGTGAAAAATATGAGCCGATCGATCTTGATCTTATGGTTCAAATTTCATTTATGTGTGTGAATGTAGGAGATCG GTGACTGCAGAGAATCCATCACTTCACTGCACTCATTTATTGACTGAAAAATGCATTTTTCCTGTTTTCTGCAGTGAATT CTGCAATGTGGTATCCAAGATTCATATATATACACAAGAAGAAGTGGAGAAGATGACAATCGGTATGATGAGTGACGATA CTCAGAGCAGTTTGGAACAGGCACCACTGATTATGGAGACTTCTAAGTCCTCCTCAGTTTGTCAGCCAGATTCTTCTCCG ACGGTAGTTAGAATCTAGTTTCAAGGTTGTATTTAGTATTCTTATGTTGGCTCTGTTGCTGTTTTATGCAATATAATCAA ATACTGAACTACCTTGGAATTTGTATGGAGCAAAATAACATCGTTAGGAAGGATAATGGACAATGTGCCATCTGAAGTTG CTCAATAATGGTGTCATTACCGCTTGAGAGTTACATTCTGAGTAGAAATGGTGTCCAAATCCTAGTTACCTAATGACACA ATTTCTTTTCAAAGTGAGGCACGGTGCTTCACAAAAAATATTCGCTGAAATTCTGAAAATACCCCTTTCAAATTTTATTA TTCCCAACATACCTTATCCTCTCATCTAAGCCTTGCCACCCAGCTACCACCAACTCCGGCTGGCCACCACCACCGTCGCT CAACAAAACCAGATCTCCTCCATAGTAGATCCTTAATCACCAAAATTTTCAGATCTAGGATTTGGATGTTGTTATTATTT TTGTTGCTGGTCATTCTCAATGCCCACTATTTCCTTTTTTCATTCCCTTATATATTATATTTGATTTGGGGCTAATTCAA TAATTAAACAAAAGAAGTAATCTCTGCATATGAAAATCTGAACTTTATCTGATTCCAGCCATTAAATTGCATATGTAAAT TAAAGTCAGACTTTTAAGTATTTTAATAACTGTTATGTGGTTCTTGATCCTTATTCAGATCTATTTCCTCATTATCTCGT TCTCGTACAGGAGGAAAGAGGTCTTGGACGTGAGTTTTGCGGAGCAGGAGCTATAGTCTGCGGCGGTGAGCAACGCAAAC CTCCCCTGCCCAGATCCTCTTCCGTAAGTCCCACGAACCAGATCGAAACAAAAGCACTATATTGACACTCAGTTTGTGTT TAACTGATGTTGAAGTGAGAGATTTGGTGAGGAGGGAGCGAGAAGGATTAAACACACAAGAGTGAGAGTGAATGGGTTGT TGATGACGATGGTGGATTGAAATAGATTAAGGATATTTTAGTAAAGCTTTGAAATAATTAGGCAATTGCCTAAGGCCCCA AACTTATTTAAGGCCCCAATTTATTTTTACCTATATAATATATTTTATTAAGACTTAAAAAAGATAATGGAACAGTGAAA ACTCATATATCTTAACTACAATATGGACAATGAAATGTGAAAACTCGAAAGTGAAATTATCAAATAAGATACGTGATATT AAAGTGTTATAAAATCTCTCAGTGTTTCATTCCTTACGTTTCAAGCTCTATTAAAACTTTAGATTCTTTTCCAAATGTAT ATATTGTCTATCAAATATTACTGTCGATTCTCGTAACGATTTCTATTGCTAGA
CDS sequence (LotjaGi3g1v0159500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATTGATCTGAATGATGCAGTGACTGAGGTTGACAAGAATGCATATTGCAATGGGGACTGTGAGAATTGTGCTTC TTGTGTTTGTTCTGGTTCCTCTTCAGCAATTGTGTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCCCTTA CTTCCCTACCAAAGAAAGGGAATGTGGTAGTCTATTTCCCACAAGGCCACTTAGAACAAGCTGCATCTTTCTCTCCCTTT TCTCCATTGGATGTTCCCACCTATGATCTTCACCCACAAATCTTCTGTAAAGTTGCCAATGTTCAACTACTTGCTAATAA GGAGAATGATGAGGTTTACACCCAAGTTACTTTGCTTCCCCAGGCAGAGTTAGAAGGAATATATTTGGAGGGCAAAGAGC TTGAGGGAGTGGGAGAAGATGTAGAGGGAAATGGAAAAACACCTGCAAAATCAACCCCTCATATGTTCTGCAAAACACTT ACTGCCTCTGATACCAGCACTCATGGGGGCTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTCCCTCCTTTGGATTA TAAGCAGCAAAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTTGAGTGGAAATTTCGCCATATTTATAGAG GTCAGCCGAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAAGCTTGTTTCTGGCGATGCAGTT CTCTTTCTAAGAGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATC AATTGTTGGTAACCAGAGCTGTTATCCAAATTTCCTTTCTTCCGTGGCTAATGCCATATCCGCGAGAAGCATGTTTCATG TTTTCTACAGTCCAAGAGCGAGTCATGCAGATTTTGTTGTGCCCTACCATAAATATGTCAGAAGCATCAAGAATCCTGTG ACCGTTGGAACAAGATTCAAAATGAAATTTGACATGGATGAATCTCCAGAAAGAAGGTCGACTACAGCAGTAACTATAAA TCGGTGTAGTAGTGGTATAGTCACTGGAATGAGTGATTTGGATCCCTACAAATGGCCCAAGTCAAAATGGAGGTGCTTAA TGGTTAGATGGGATGAGATTGTTGAAACTAATCATCAAGATAGAGTATCTCCATGGGAGGTTGATCCTTCTGCATCTCTC TCTCCCTTGAGCATTCAAGCTTCACGAAGGCTGAAGAAACCGCGCACAGATCTGGAAGCTGACTCACCCAATCACCTAAT TACTGGAGGCAGTGGGTTTATGGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAAGTT TTATGTCACTATATTATGGATGTGACACTGTAACTAAGAAACCAGAATTTGATATCAAATCTCCAAGTCAACCTAATCTT GCATCAACTGGAGTAAGAAAGATTACTGCTGCTGCTGAGGTTATGAGGGTTCACCCTTTTAATTACGCAGGCTTCACGGA AACTAACAGGCTTCCGAGGGTCTTGCAAGGTCAAGAAATATTTCCACTGAGTTCCCTGACTGGTAAGGTTGATTTGAGCC TTGGTGGTTGGGGAAACCCCCATGTCAGTTGCACAAATTACAACCTGCATCAGGCAACCAAACCTAGCTTTCACTCTTTA AGACCAGAACTTCTTCAAACTGCTTATTTTCCTTTTGGTGATATTCACAAAGCTGGTCAAGGATTCAGCATGTTGTGCTC CAAACCCACCAATTTCCAACGAGAGAATGTCGCGTTTAACGCTCCTTCCACTCAGTCAGGGATCATGAGAAGTGAAGTTG GACTTTCAGACCTGACCATCCCAAATGAGCAGAAGCTACAGGATAATATTTCTGGAACTGCTGCTTCTTTAGGGGCAAAC ATAAGGATTCTAAATGATGACAATTTCGATGGGAAGGTAAACGCTTGTAAACTATTCGGATTTCCCTTGTCTGGGGAAAG TACCTCCCAAAATTTACAGAACACTGCTAAAAGAAGTTGCACCAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCA TTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGAGTGAACTAGAGAGGCTATTTAGCATGGAAGGCCTTCTAAGA GAACCTGATAAGGGATGGAGAGTCCTCTACACTGACCGTGAAAATGACATCATGGTTGTGGGAGATGATCCATGGCATGA ATTCTGCAATGTGGTATCCAAGATTCATATATATACACAAGAAGAAGTGGAGAAGATGACAATCGGTATGATGAGTGACG ATACTCAGAGCAGTTTGGAACAGGCACCACTGATTATGGAGACTTCTAAGTCCTCCTCAGTTTGTCAGCCAGATTCTTCT CCGACGGTAGTTAGAATCTAG
Protein sequence (LotjaGi3g1v0159500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIDLNDAVTEVDKNAYCNGDCENCASCVCSGSSSAIVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPF SPLDVPTYDLHPQIFCKVANVQLLANKENDEVYTQVTLLPQAELEGIYLEGKELEGVGEDVEGNGKTPAKSTPHMFCKTL TASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKKLVSGDAV LFLRGENGELRLGIRRAARPRNGLPESIVGNQSCYPNFLSSVANAISARSMFHVFYSPRASHADFVVPYHKYVRSIKNPV TVGTRFKMKFDMDESPERRSTTAVTINRCSSGIVTGMSDLDPYKWPKSKWRCLMVRWDEIVETNHQDRVSPWEVDPSASL SPLSIQASRRLKKPRTDLEADSPNHLITGGSGFMGFEESVRSPKVLQGQENTSFMSLYYGCDTVTKKPEFDIKSPSQPNL ASTGVRKITAAAEVMRVHPFNYAGFTETNRLPRVLQGQEIFPLSSLTGKVDLSLGGWGNPHVSCTNYNLHQATKPSFHSL RPELLQTAYFPFGDIHKAGQGFSMLCSKPTNFQRENVAFNAPSTQSGIMRSEVGLSDLTIPNEQKLQDNISGTAASLGAN IRILNDDNFDGKVNACKLFGFPLSGESTSQNLQNTAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFSMEGLLR EPDKGWRVLYTDRENDIMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGMMSDDTQSSLEQAPLIMETSKSSSVCQPDSS PTVVRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 798 | 778 | 0.0 | – | |
| PANTHER | 21 | 798 | 778 | 0.0 | – | |
| SUPERFAMILY | 148 | 267 | 120 | 2.22E-44 | ||
| Gene3D | 153 | 258 | 106 | 7.9E-45 | ||
| CDD | 154 | 256 | 103 | 1.82962E-23 | ||
| ProSiteProfiles | 156 | 258 | 103 | 13.14 | ||
| Pfam | 156 | 257 | 102 | 5.1E-22 | ||
| SMART | 156 | 258 | 103 | 3.1E-24 | ||
| Pfam | 282 | 373 | 92 | 8.0E-28 | ||
| Gene3D | 319 | 403 | 85 | 4.4E-31 | – | |
| Gene3D | 673 | 767 | 95 | 5.9E-35 | – | |
| ProSiteProfiles | 678 | 762 | 85 | 20.772 | ||
| SUPERFAMILY | 681 | 757 | 77 | 3.34E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi3g1v0159500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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