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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0159500 |
| Transcript ID | LotjaGi3g1v0159500.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT5G60450.2 auxin response factor 4; Swiss-Prot: sp|Q9ZTX9|ARFD_ARATH Auxin response factor 4; TrEMBL-Plants: tr|A0A151RGB2|A0A151RGB2_CAJCA Auxin response factor; Found in the gene: LotjaGi3g1v0159500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:21757029..21761768) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAATTGATCTGAATGATGCAGTGACTGAGGTTGACAAGAATGCATATTGCAATGGGGACTGTGAGAATTGTGCTTC TTGTGTTTGTTCTGGTTCCTCTTCAGCAATTGTGTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCCCTTA CTTCCCTACCAAAGAAAGGGAATGTGGTAGTCTATTTCCCACAAGGCCACTTAGAACAAGCTGCATCTTTCTCTCCCTTT TCTCCATTGGATGTTCCCACCTATGATCTTCACCCACAAATCTTCTGTAAAGTTGCCAATGTTCAACTACTTGTGAGTAC TTAAACTCATTGAACTAAGCTCTTAGATTGAATTGTATCTGCTTAATTCAACTCCTTTTTGTTGCTTTTGTTATTTGGTT TAGGCTTAATTGTCTTCTTTTTTGTTTTTATGTTTTTTCTCCATCAACAGGCTAATAAGGAGAATGATGAGGTTTACACC CAAGTTACTTTGCTTCCCCAGGCAGAGGTTGGATTTTCATTTTGTATAGTTATTTCTGTTTTGATGCATCTTCTTTAGTT AATTTTGGTTTGAGTTTCTTCTTGGGAAATAGACAAGTAAAGAATTTGGAACCCTGTTGTTTTGAAATGTTATATGACGC AACAGCAAGATAAAGTAACTCTAATAGCATGTTTGGATTAGCTCATATTTTCTCAATAATCAATTATGGCATCCAGAAGC TACTCACAGAAGCTTTTCTCTATAATTGGTTTTGGCTTCAGAATCAATTGTAGAATGATTTCCAAACATGCACTAAATGT TGGGTTGTCTTCAGTTAGAAGGAATATATTTGGAGGGCAAAGAGCTTGAGGGAGTGGGAGAAGATGTAGAGGGAAATGGA AAAACACCTGCAAAATCAACCCCTCATATGTTCTGCAAAACACTTACTGCCTCTGATACCAGCACTCATGGGGGCTTCTC TGTTCCTCGTAGAGCTGCTGAAGACTGTTTCCCTCCTTTGGTATGACACCAAGATCAAGTTTCCAAGCATAATTTCTAAC ATAAATATTCAGAATTTTTAAAGGTGATCAATTCTGTTTATTTTCACTGCAGGATTATAAGCAGCAAAGACCCTCTCAAG AGCTTGTTGCAAAAGACCTGCATGGTGTTGAGTGGAAATTTCGCCATATTTATAGAGGTAACCATAACAGAGAAACTCTG TCTGGTTTGGCTTCATATATTAACTATAAGTGATACAGGAAGTCCATGTGGTCATTTTTGAAGGTCAGCCGAGGCGGCAT CTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAAGCTTGTTTCTGGCGATGCAGTTCTCTTTCTAAGGTAGGT CTGTGCGCGCGCGCGTGTGTGTGTGGAACTGGGGTTTTTTTTACAAATGGCATTGATTTCTATAAGTTTGATTTTTTTTT TTAATCTTCTTACAATTAATATCATACAGCCATTTTTACAACAAAGTAATATCAGCTGCCAAAAAAATATTTGGATTTGA TCAATCTTGTCCTTTTATTGGAACGGTCATGTATCATTTTGTTGATTATTCATAATAAGAAGCTTCTTGTCATGGAGATG GTAAGGTACCAAACTAGCAAAAGGAATATCTTGTTTTAGAACATATCTCTAGACCTCTGATTTCTTTTGTACAAGAGAAA CTAGAACTTGTCTTGACAAACTTTAAAAGCAAGAGAGTTGAGTGATAGTAAATAAATAATATATGAATGCCAACTTGAGA TTCTACATATTAGTCTCAGAGGAAGAGGAATCTTTCATGCTACTAACTTTTAGATCCCTTACTACTTATGAATCTCTTTG TAGAGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGTTG GTAACCAGAGCTGTTATCCAAATTTCCTTTCTTCCGTGGCTAATGCCATATCCGCGAGAAGCATGTTTCATGTTTTCTAC AGTCCAAGGTGATCATTTTTTTTTCACATGTATAGTTCTCTAACTATTTAATCTTTAATTTTCAATTTGTCATGGCTGCT ATAGATGAAATTATTTTAATGTATGCCATGATGGCAGTACGGTACTACCGTGGCATTGGTGAATAAATCAAGGAAGATCT CAAGTATTGTTTTTAGTTTTTACAATCCCTGAGACAGCTTATCTGTCAGTTTCTAATAAACTCTTGGTCACGGAACTTGA TTAGATCTTGCATAATGAGAGTCATAGTATTAATTAAGTTGACATTGTAGGTTTAGAGAACAAATGAAGCACTTGGATAA CTTTTGAAGTGGTTGTTTACCCTGTATCAACATCTGTTCTGACTTATCACATAGAAGTGCTAGATAGATAAAATAAAGGG TTATTTTAGCCCACATGTTATTTAGCCCATATGAACCAAGCCACAAATTTGTGACATTTTAATTTGGTATAATGCAGAGC GAGTCATGCAGATTTTGTTGTGCCCTACCATAAATATGTCAGAAGCATCAAGAATCCTGTGACCGTTGGAACAAGATTCA AAATGAAATTTGACATGGATGAATCTCCAGAAAGAAGGTCGACTACAGCAGTAACTATAAATCGGTAACCATTGTCTTCC ATGAACCCAAAAGAATCTTCTGAGGAATATGACACACTCTTCCTGTCTTGCAGGTGTAGTAGTGGTATAGTCACTGGAAT GAGTGATTTGGATCCCTACAAATGGCCCAAGTCAAAATGGAGGTGCTTAATGGTACGTTTTATATTTTTCTTTATGCACA ATTCAGTATGTTTTGACAATATTATCCATTTAGCATTTTGAGCATATGATTTTTGTTAATGAAGTACTGAACAAATGGTG ATATCTCGATCAACTTAAGCTTGCTTTGATATACAACAGGTTAGATGGGATGAGATTGTTGAAACTAATCATCAAGATAG AGTATCTCCATGGGAGGTTGATCCTTCTGCATCTCTCTCTCCCTTGAGCATTCAAGCTTCACGAAGGCTGAAGAAACCGC GCACAGATCTGGAAGCTGACTCACCCAATCACCTAATTACTGGTATGAATAATGAATCCTAATACCAAGATAGCCAAAGT AGCATAAATCAGTTATTTCTTACTCAATGCATCCTAATAGTCCTCTCTTCTTTATTCATGTTTTTGGCTTCTTGATTGGA GGGTCGGCAACAGGAGGCAGTGGGTTTATGGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAA TACAAGTTTTATGTCACTATATTATGGATGTGACACTGTAACTAAGAAACCAGAATTTGATATCAAATCTCCAAGTCAAC CTAATCTTGCATCAACTGGAGTAAGAAAGATTACTGCTGCTGCTGAGGTTATGAGGGTTCACCCTTTTAATTACGCAGGC TTCACGGAAACTAACAGGCTTCCGAGGGTCTTGCAAGGTCAAGAAATATTTCCACTGAGTTCCCTGACTGGTAAGGTTGA TTTGAGCCTTGGTGGTTGGGGAAACCCCCATGTCAGTTGCACAAATTACAACCTGCATCAGGCAACCAAACCTAGCTTTC ACTCTTTAAGACCAGAACTTCTTCAAACTGCTTATTTTCCTTTTGGTGATATTCACAAAGCTGGTCAAGGATTCAGCATG TTGTGCTCCAAACCCACCAATTTCCAACGAGAGAATGTCGCGTTTAACGCTCCTTCCACTCAGTCAGGGATCATGAGAAG TGAAGTTGGACTTTCAGACCTGACCATCCCAAATGAGCAGAAGCTACAGGATAATATTTCTGGAACTGCTGCTTCTTTAG GGGCAAACATAAGGATTCTAAATGATGACAATTTCGATGGGAAGGTAAACGCTTGTAAACTATTCGGATTTCCCTTGTCT GGGGAAAGTACCTCCCAAAATTTACAGAACACTGCTAAAAGAAGTTGCACCAAGGTGAGCGATGATAGCAACAGAGTTAT ATTGTGATATGACTTTTTATCTTCCTTTGATGATTTGCATATCCATGTAACATAACACTGAATGAAGGTTCACAAGCAAG GTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGAGTGAACTAGAGAGGCTATTT AGCATGGAAGGCCTTCTAAGAGAACCTGATAAGGGATGGAGAGTCCTCTACACTGACCGTGAAAATGACATCATGGTTGT GGGAGATGATCCATGGCAGTAAGTATTTGACTCAAATATTTCTTTATTCTAATACTGCTTTGCCATCTTTTAGGAATTTG GCTTACCTACAGTTGGATAGTTCCTAAATTCATCCAGTCAACGAATCTAAGCCATCCAATTTCGAAGATATCTCTACCAT CTGACTTTGGTGAAAAATATGAGCCGATCGATCTTGATCTTATGGTTCAAATTTCATTTATGTGTGTGAATGTAGGAGAT CGGTGACTGCAGAGAATCCATCACTTCACTGCACTCATTTATTGACTGAAAAATGCATTTTTCCTGTTTTCTGCAGTGAA TTCTGCAATGTGGTATCCAAGATTCATATATATACACAAGAAGAAGTGGAGAAGATGACAATCGGTATGATGAGTGACGA TACTCAGAGCAGTTTGGAACAGGCACCACTGATTATGGAGACTTCTAAGTCCTCCTCAGTTTGTCAGCCAGATTCTTCTC CGACGGTAGTTAGAATCTAG
CDS sequence (LotjaGi3g1v0159500.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATTGATCTGAATGATGCAGTGACTGAGGTTGACAAGAATGCATATTGCAATGGGGACTGTGAGAATTGTGCTTC TTGTGTTTGTTCTGGTTCCTCTTCAGCAATTGTGTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCCCTTA CTTCCCTACCAAAGAAAGGGAATGTGGTAGTCTATTTCCCACAAGGCCACTTAGAACAAGCTGCATCTTTCTCTCCCTTT TCTCCATTGGATGTTCCCACCTATGATCTTCACCCACAAATCTTCTGTAAAGTTGCCAATGTTCAACTACTTGCTAATAA GGAGAATGATGAGGTTTACACCCAAGTTACTTTGCTTCCCCAGTTAGAAGGAATATATTTGGAGGGCAAAGAGCTTGAGG GAGTGGGAGAAGATGTAGAGGGAAATGGAAAAACACCTGCAAAATCAACCCCTCATATGTTCTGCAAAACACTTACTGCC TCTGATACCAGCACTCATGGGGGCTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTCCCTCCTTTGGATTATAAGCA GCAAAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTTGAGTGGAAATTTCGCCATATTTATAGAGGTCAGC CGAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAAGCTTGTTTCTGGCGATGCAGTTCTCTTT CTAAGAGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGT TGGTAACCAGAGCTGTTATCCAAATTTCCTTTCTTCCGTGGCTAATGCCATATCCGCGAGAAGCATGTTTCATGTTTTCT ACAGTCCAAGAGCGAGTCATGCAGATTTTGTTGTGCCCTACCATAAATATGTCAGAAGCATCAAGAATCCTGTGACCGTT GGAACAAGATTCAAAATGAAATTTGACATGGATGAATCTCCAGAAAGAAGGTGTAGTAGTGGTATAGTCACTGGAATGAG TGATTTGGATCCCTACAAATGGCCCAAGTCAAAATGGAGGTGCTTAATGGTTAGATGGGATGAGATTGTTGAAACTAATC ATCAAGATAGAGTATCTCCATGGGAGGTTGATCCTTCTGCATCTCTCTCTCCCTTGAGCATTCAAGCTTCACGAAGGCTG AAGAAACCGCGCACAGATCTGGAAGTTGATTTGAGCCTTGGTGGTTGGGGAAACCCCCATGTCAGTTGCACAAATTACAA CCTGCATCAGGCAACCAAACCTAGCTTTCACTCTTTAAGACCAGAACTTCTTCAAACTGCTTATTTTCCTTTTGGTGATA TTCACAAAGCTGGTCAAGGATTCAGCATGTTGTGCTCCAAACCCACCAATTTCCAACGAGAGAATGTCGCGTTTAACGCT CCTTCCACTCAGTCAGGGATCATGAGAAGTGAAGTTGGACTTTCAGACCTGACCATCCCAAATGAGCAGAAGCTACAGGA TAATATTTCTGGAACTGCTGCTTCTTTAGGGGCAAACATAAGGATTCTAAATGATGACAATTTCGATGGGAAGGTAAACG CTTGTAAACTATTCGGATTTCCCTTGTCTGGGGAAAGTACCTCCCAAAATTTACAGAACACTGCTAAAAGAAGTTGCACC AAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGAGTGA ACTAGAGAGGCTATTTAGCATGGAAGGCCTTCTAAGAGAACCTGATAAGGGATGGAGAGTCCTCTACACTGACCGTGAAA ATGACATCATGGTTGTGGGAGATGATCCATGGCATGAATTCTGCAATGTGGTATCCAAGATTCATATATATACACAAGAA GAAGTGGAGAAGATGACAATCGGTATGATGAGTGACGATACTCAGAGCAGTTTGGAACAGGCACCACTGATTATGGAGAC TTCTAAGTCCTCCTCAGTTTGTCAGCCAGATTCTTCTCCGACGGTAGTTAGAATCTAG
Protein sequence (LotjaGi3g1v0159500.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIDLNDAVTEVDKNAYCNGDCENCASCVCSGSSSAIVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPF SPLDVPTYDLHPQIFCKVANVQLLANKENDEVYTQVTLLPQLEGIYLEGKELEGVGEDVEGNGKTPAKSTPHMFCKTLTA SDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKKLVSGDAVLF LRGENGELRLGIRRAARPRNGLPESIVGNQSCYPNFLSSVANAISARSMFHVFYSPRASHADFVVPYHKYVRSIKNPVTV GTRFKMKFDMDESPERRCSSGIVTGMSDLDPYKWPKSKWRCLMVRWDEIVETNHQDRVSPWEVDPSASLSPLSIQASRRL KKPRTDLEVDLSLGGWGNPHVSCTNYNLHQATKPSFHSLRPELLQTAYFPFGDIHKAGQGFSMLCSKPTNFQRENVAFNA PSTQSGIMRSEVGLSDLTIPNEQKLQDNISGTAASLGANIRILNDDNFDGKVNACKLFGFPLSGESTSQNLQNTAKRSCT KVHKQGSLVGRAIDLSRLSSYNDLLSELERLFSMEGLLREPDKGWRVLYTDRENDIMVVGDDPWHEFCNVVSKIHIYTQE EVEKMTIGMMSDDTQSSLEQAPLIMETSKSSSVCQPDSSPTVVRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 408 | 388 | 0.0 | – | |
| PANTHER | 21 | 408 | 388 | 0.0 | – | |
| SUPERFAMILY | 146 | 265 | 120 | 1.7E-44 | ||
| Gene3D | 151 | 256 | 106 | 6.2E-45 | ||
| CDD | 152 | 254 | 103 | 1.5529E-23 | ||
| ProSiteProfiles | 154 | 256 | 103 | 13.14 | ||
| SMART | 154 | 256 | 103 | 3.1E-24 | ||
| Pfam | 154 | 255 | 102 | 4.1E-22 | ||
| Pfam | 280 | 362 | 83 | 2.9E-32 | ||
| Gene3D | 317 | 392 | 76 | 7.2E-33 | – | |
| PANTHER | 408 | 677 | 270 | 0.0 | – | |
| PANTHER | 408 | 677 | 270 | 0.0 | – | |
| Gene3D | 552 | 646 | 95 | 4.7E-35 | – | |
| ProSiteProfiles | 557 | 641 | 85 | 20.772 | ||
| SUPERFAMILY | 560 | 636 | 77 | 1.7E-9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi3g1v0159500.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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