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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0161600 |
| Transcript ID | LotjaGi3g1v0161600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing protein; TAIR: AT5G60570.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9FKJ0|FK132_ARATH F-box/kelch-repeat protein At5g60570; TrEMBL-Plants: tr|I1M4L4|I1M4L4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0161600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22033659..22037123) extracted from Lotus japonicus Gifu genome v1.2.
TAACTGCAAAACAAGAACAATTCTATGTTATAAGTTGTCTCTGTAACTCACAAAGTACCTCCACAGTCATTTGCAGTCCA AATTTGCAAGCTATCTCTTTTCTATCTATCTTTCTAAAGTCTACGTTGTTTTGCGTTTCCAGCAACATGCTTCACCGCCT CCCACATCCATTTCTGAGATCTACCCCTTCTCTTCACTTCCAGGTACCCATCATTCACATTCATATTCCCAATCTTCTCT AGAATCTTTCAGGAAAAAAATGATTGTTTTTTTGTTTGTTTTGGATCCGAATCCGCTAGTAACTGGTTATTGAATTGGAT CGGAGAATACCCTTTTGCTCAGATTTGATTTTTTTGGAGAAAAGTTGATTAATTTATTTGTTGTTGTGGTGAATTTGCAG ATTGTTCTTCTGGGTCCTTGAAACTGGAAATTTGCAGGGAGAGTTTCAATTTTGAATCTTGCTGCTGGTGATTCATTTGG TATTGAACCCTTGATTTTCTCTCTGTTTCTGTTTTAATTGGAGGTTGTGATTTTCATGTTTATGTGCAAGTTGGGTGAAG TGATTTTTTTTAGCATAAGGCAATAACAGATTCCTAATTAATTGAATAGAGATTGGTGACATACAGATACTGGAATGAAT AAATTTTTATTGGTATACTATAGATAGGAGATACATGAAGGAATGAATTAATGGAATAATAGTGGTCTTTGCTTCTGCTT TTCAAGGTTGATTTTCCATCTGCTTGTTGTTGGGTGGGATGTGCTGAAGATTCTTTGACATGTTGAAGAAATTACGGTTG GATTATTGTTCTTTGCAGGAAGATGAAAAGAAAGTGATTAACTTTCTGAGAATGGATAGGAGGGAAGGAGTGAATGATGG TTTTTCTAGACCTGAACCAAATGATTCGCTTCTCCCTGGCCTAATTGATGATGTTGCTCTGAATTGTCTTGCTTGGGTTA GCGGATCCGATTATGCTTCCTTGTCTTGTGTGAATAAAAGGTACAGTCAGCTGATTAATAGTGGCTATCTATATGGGTTG AGGAAGCAGGTGGGAGCTGTGGAGCATTTGGTTTATATGGTTTGTGATCCGAGAGGATGGGTTGCATTTGACCCCAAGAT AAATAAATGGATGGCGTTACCCAAGATACCTTGTGATGAGTGTTTTAACCATGCAGACAAGGAGTCCTTGGCTGTGGGTT GTGAACTCTTGGTTTTCGGTCGGGAACTGATGGAGTTTGCGATCTGGAAATATAGCTTGGTTTGTCGTGGCTGGGTGAAG TGTCAGGAGATGAACCAGCCTCGCTGCTTGTTTGGATCTAGTAGCCTTGGTTCAATTGCTGTTGTAGCTGGGGGGAGTGA TAAGTACGGAAATGTTCTAAAATCAGCTGAGTTGTATGACTCTTCATCCGGCACATGGGAACTGCTACCAAACATGCACA CACCGCGTAGATTGTGCTCTGGTTTTTTTATGGATGGCAAATTCTACGTGATTGGTGGAATGTCTAGCACAACTGTTTCA TTAACTTGTGGGGAAGAATATGACCCCAAGACGAGAATTTGGCGGAAGATAGAGGGTATGTATCCATATGTTAATGTGGG TGCTCAGGCACCTCCGCTCGTGGCAGTTGTGGATAATCAGTTATATGCAGTTGAGCATGTGACTAACATGGTGAAGAAAT ATGACAAGGAAAAGAACACATGGAATGAATTAGGAAGGCTTCCAGTCCGGGCTGATTCTTCTAATGGCTGGGGCCTGGCT TTCAAGGCGTGTGGCGAGCGACTTTTGGTTGTAGGTGGACAGAGAGGTCCGGAAGGTGAAGCTATTGTGTTAAATTCATG GTGTCCTAAGTCAGGGGTCAGGAATGGCACCATAGATTGGCAGGTACTTGGGGTGAAGGAGCATGTCGGGGTGTTTGTTT ATAATTGCGCTGTTATGGGTTGTTGAGAATCCAAGATAATTTTAGATTGACTCAGCCGAAGAATCTGCTGGTATCTACAA TCTGACTTACCCTTGAAGCTGAAGGGTGCTTCCATGCTCAGTCACCTCATTTACTAAGTTGTTGTTGGGATAGCTTTCCC TAGCTGAAAATTTGGTTTCTTTCTTTTAACAATGGTTTAACTGGATGATGTATTTTTCATGTTCCATAATTTTAAATTGC TTTTGAGATTACTGGGTAGGCTTACAGGGATATGTTCTGTTTTCTTTTTCTTAGCCAACTATGTAAACCAATAAATTTAT TGAATGCAATTGTATGCTGCTTTGGTTATTCAGTAGTGTAGTACGTTTGTCAAAATTTATATTTGTTATTCATTCTTAGA GAAGGGGGTGAGCCTCGGCGTAACGTAAGGTTGCTGCCATGTGACTTTCTGGTCACAGGTTCAAGCTGTTGAATCAGCCT CTTGCAAAAATGCAAGGCAAGGCTATCTACATTAGATCTACAAAGTGGATCCGGCCCCTCTTCGGACATTGTGCATAGCG GGAGCTTTAAAACACCACGTTTTCCCTTTTTATGTATTCTTAGAGAAATATTTTGCTTGTGTGCTGAGCCTGAGTATAGG ATTAGGATTCTATTGTGTCACATGATACTGTTATGTGAAACTTTGTGTCTATTTCTCTCTTTATAAGTATTTAGAAGGTT TCAGCTATTTAACAGATATGAAGAGATAGATGATTGCACAATTTTAACATGACACTATCAGTATCAGGTGAAGTTTTCAC GTGAGAGAGGATTCTAATCCGTGGTGTGTGTTGTGTAACAAATAGTCGATCGAACTAGAGTTTCTAAGGGTGATTGGGTC TAGATTGTAGCTGATATGTTCAGTTAAGACAAATGATAGAGGTTGCTTCTCATATTAGTTCACCTATCTATCTATCATCC CATTTGGCTTGTAATTTGAATGTTAGATTGCAAGTATAGGTGAAAACAAAGTTACCAACTTACTTGAAATTATTTTCTGT GTTAACTTCTGTTATTTATTATGAGCAAGAGGTCCCCGGAGGTGTATTATGTGCTTGTGTACTTTGTCCAGCTGTACTTG CTGGATTAAGCTCAAGTTTTCTTCTTCCTATTTATGTGGGGTATGCACTTATGATCAACATGACCTAAAAATGCGTACTC TTCTTTAATCAGGAAGATTAATGGGGACCATTACTTGTTACGCTATTTCTATTTGATTCCTTTGTCCACTTCTCTTGCAA CCCACTATTTATTGTTATACAGTTCATAGTATATCTTGTACACTTATAACCAGTTTGACATTGAGATGAATGTGTGGTTG AACCTCTTTTCTCGCCAACTAACAAATGATTGTTCAATTACATTTTACTCTCTTGTTCGTTTTTAGTCATTAGGTGAGAT TTAAGTTATCCTAATCCAACCATGTTTTTCTGTCATGAAATGCTATCATATTACGTACCCTTCATGTGTGGGGACTAATT CAGGTGGTGCTAGTATCATTTCCTG
CDS sequence (LotjaGi3g1v0161600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAGGAGGGAAGGAGTGAATGATGGTTTTTCTAGACCTGAACCAAATGATTCGCTTCTCCCTGGCCTAATTGATGA TGTTGCTCTGAATTGTCTTGCTTGGGTTAGCGGATCCGATTATGCTTCCTTGTCTTGTGTGAATAAAAGGTACAGTCAGC TGATTAATAGTGGCTATCTATATGGGTTGAGGAAGCAGGTGGGAGCTGTGGAGCATTTGGTTTATATGGTTTGTGATCCG AGAGGATGGGTTGCATTTGACCCCAAGATAAATAAATGGATGGCGTTACCCAAGATACCTTGTGATGAGTGTTTTAACCA TGCAGACAAGGAGTCCTTGGCTGTGGGTTGTGAACTCTTGGTTTTCGGTCGGGAACTGATGGAGTTTGCGATCTGGAAAT ATAGCTTGGTTTGTCGTGGCTGGGTGAAGTGTCAGGAGATGAACCAGCCTCGCTGCTTGTTTGGATCTAGTAGCCTTGGT TCAATTGCTGTTGTAGCTGGGGGGAGTGATAAGTACGGAAATGTTCTAAAATCAGCTGAGTTGTATGACTCTTCATCCGG CACATGGGAACTGCTACCAAACATGCACACACCGCGTAGATTGTGCTCTGGTTTTTTTATGGATGGCAAATTCTACGTGA TTGGTGGAATGTCTAGCACAACTGTTTCATTAACTTGTGGGGAAGAATATGACCCCAAGACGAGAATTTGGCGGAAGATA GAGGGTATGTATCCATATGTTAATGTGGGTGCTCAGGCACCTCCGCTCGTGGCAGTTGTGGATAATCAGTTATATGCAGT TGAGCATGTGACTAACATGGTGAAGAAATATGACAAGGAAAAGAACACATGGAATGAATTAGGAAGGCTTCCAGTCCGGG CTGATTCTTCTAATGGCTGGGGCCTGGCTTTCAAGGCGTGTGGCGAGCGACTTTTGGTTGTAGGTGGACAGAGAGGTCCG GAAGGTGAAGCTATTGTGTTAAATTCATGGTGTCCTAAGTCAGGGGTCAGGAATGGCACCATAGATTGGCAGGTACTTGG GGTGAAGGAGCATGTCGGGGTGTTTGTTTATAATTGCGCTGTTATGGGTTGTTGA
Protein sequence (LotjaGi3g1v0161600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRREGVNDGFSRPEPNDSLLPGLIDDVALNCLAWVSGSDYASLSCVNKRYSQLINSGYLYGLRKQVGAVEHLVYMVCDP RGWVAFDPKINKWMALPKIPCDECFNHADKESLAVGCELLVFGRELMEFAIWKYSLVCRGWVKCQEMNQPRCLFGSSSLG SIAVVAGGSDKYGNVLKSAELYDSSSGTWELLPNMHTPRRLCSGFFMDGKFYVIGGMSSTTVSLTCGEEYDPKTRIWRKI EGMYPYVNVGAQAPPLVAVVDNQLYAVEHVTNMVKKYDKEKNTWNELGRLPVRADSSNGWGLAFKACGERLLVVGGQRGP EGEAIVLNSWCPKSGVRNGTIDWQVLGVKEHVGVFVYNCAVMGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 364 | 363 | 5.4E-228 | – | |
| PANTHER | 2 | 364 | 363 | 5.4E-228 | – | |
| SUPERFAMILY | 16 | 105 | 90 | 3.92E-7 | ||
| Gene3D | 79 | 337 | 259 | 1.3E-40 | ||
| SUPERFAMILY | 82 | 321 | 240 | 1.57E-45 | ||
| Pfam | 150 | 195 | 46 | 3.6E-9 | ||
| SMART | 162 | 209 | 48 | 3.1E-5 | ||
| Pfam | 198 | 243 | 46 | 4.1E-8 | ||
| SMART | 210 | 254 | 45 | 4.7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0161600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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