Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0162700 |
| Transcript ID | LotjaGi3g1v0162700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alba DNA/RNA-binding protein; TAIR: AT3G04620.1 Alba DNA/RNA-binding protein; Swiss-Prot: sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160; TrEMBL-Plants: tr|A0A151SD76|A0A151SD76_CAJCA Uncharacterized protein family; Found in the gene: LotjaGi3g1v0162700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22123341..22126682) extracted from Lotus japonicus Gifu genome v1.2.
AGTCTCTACATCTCTATGCAGCAGTATTGTCCACCATTGGATGAATCCAACAGTTCAGATTTTTAAAAATTAAATAATTA AAAAATGAGCAAATTGAGGGTCTTCTCTGTTTAGAACATCGCGTGAGCCCCATCTGCAGCGTTTACTCCTCCATGTTGGG AGCAATAATAGAAAAGAGAGAATAGAGAAAGAAATATCACACAAGAATTTTTAACGTGGTTCAGAACACAATGTGTGTAC CTACGTCCACGACTACACTAGGTAGTAATATTTCTCTTTGGTGTGTATAATGCTTACAATAAGGTGCCTATATATAGTAG GAGTAAGTCAACCTCCCCCTTCAAATATCTCAGTATCCACTTTACACCTTCCCAATGCTCCTTCCTAGGGTTTGACATGA ATCTGCTGACAACTCCCACATTATCATGACCCTCCTCCGCAACCATATAAATGGAGCCTCGTTTCTTTCCTCGAGCTACA ACCAGATTTCCTTTCGTCACCTTCCAAACTCCACCCCCAAAAGTGGTGTGGTAACCCTCATCATCCAACTGGCCTATGGA GATCAAATTTCTCTTTATTCCAGGGACATGTCTGACATTATGCAATGTCCAGAGAGTTCCATTAGAGGATCTGATATCAA TATCACCTCTTCCCACAATATCAAGTGGTTTTCCATCTGCAAGATAAACCTTTCCAAACTTTCCAGAGATATAGTTAGAT AATAATTCTTTTGAAGGAATAGTATGAAAAGATGCACCTGAATCTATAACCCATGAATCAACAGGACTATCCAAGCTGCA AATTAATGCGTCTGCTACTTCCTCAGTTGCTGCATTAGCAGATTCATCATCATCTTGCCTCTTTTAGTAATTCTTCTTCT TCCTTGGGGCTTTGCATAGATTGGTGAAGTGACCTTTCTTTTTTCAATTCCAGCAAGTGATGTCATTCCTGACTCTTGTC TGACTTCTTCCTCTTGATTTTGATCTGCCTCGGCCTTGGGCTTGATTGTGACTCTTCTGACTACCTCTTCCTCTACTTTC AGTATTCAATGCTGAACTGGAAGCGTTTGAAGACTCTCCTGAATCTTTCCTGCGAATATCCTCGCTTAAGATCAGGTCTC TGATGTCATCAAACTTCAGCTTGCTATCCCTTGCAGAGTTACTGACCGCAGTGACAGTTGCAGTCCAACTATCCGGTAAG GATTGTAACAGACTCAAGGCCATCAATTCGTCGTCAAAGGTAATCTTCACTGACGATAGCTGCGAAATAATTGTATTAAA GCTATTAATGTGTTCAGTTACAGAGTTACCTTCTCCCATTCTGAGATTGAATAGACGTCGTATCAGATGTACTTTATTGG TGGCAGATGGCTTCTCGTACATATTTGATAATGCATTCATCAGATCTGCAGTAGTCTTCTCATTCACAATGTTGAGCGCA ACATTTTTGGATAACGTCAATCTGATCAAACCAAGGGCATGTCGATCTAACAGGCTCTAGTCTTCCTGCTTCATGTCATT TGGCTTCTTCCCTGTCAAGGGTTGATACAACTTCTTTTGGTACAGATAGTCCTCTATCTGCATCTTCCAAAACCCGAAGT CTCTGCCATCGAACCTCTCAATCTTCACCTTCCCTTCTTCCAACGCCATTGCTCCCACTTCTTCCTCTAAACTGAGGATC TATCACACGAACCAGAAGCTCTGATACCAGTTGTTGAGAGCAATAATAGAAAAGAGATAAGAGAGAAATAAATATCACAC AAGAATTTTTAACGTGGTTCAGAACACAATGTGTGTACCTACGTCCACGGCTACACTAGGTAGTAATATTTCTCTTTGGT ATGTATAATGCTTACAATGAGGTGCCTATATATAGTAGGAGTAAGTCAACCTCCTCCTTATTCTAAGCGATGTAAGACTT ACAAATAGACTACATAAGCGATGTGGGACTACATAACATAACATTTATGTCTTCCTCAGTGATAATATTTTCACTTAAGC AACCAGTTCTCGAGCTTGCTCCCCCCCCCCCCCCTCCCCCCTCTGGCATGTTCTTCTTCTCCGTCGCGTCCCTCCGGCGA CTTCTTCTCTGTCGCGTCCCTCCGACGACTTCTTCTCCGTCGCGTCTCTTCCTCTTTGGCGACTTCTTCTTCTCCGTCGC GTCACTCCCCTATGGCGACTTCTTCTTCTCTGCCGCGTTCTTATCCTCCGGCGGCGACCTCTTCTCGGTGGCAAAGTCCA TCAGCTCTTACAAGTATCACACCTTCTCCCAGATCTTCACCCCACAAGCAAAGAGGCTGAGAAGTCAGAACAAAGCCCCA AACCGAAACTGCTAGGCTCCTGATCTGCCATCTCCTATATCTGCCATCTCCCCCATCTCCTTCACACGTCGATTCTGGTA CTGCAACGTCTAAGGGAGGGGACTCGTGAGAAGATTTGGGGTGAACGAAGTTGTTACAGATGGTGATTTGGTGGGGAGGG AAATAGGGTTTGGCAGATAGATTTGTTGGCCTTCTCTGTAATTGGAATTGGAATAAAGTGATAGCAAGATTGTTTGAGAA GAAAGAGAGAGAATGGAAGTGACGGCGGTGACTGCTGCTGAGATCAGAATCGCCAAGATCAATGGCGGCGACGAGAACGC GAAGAAGAAGATCGCTCGCATTCAGGTTTCCAAGAACAAGAAGCCGTTGTTTGTCTACCTCACCCTCGCCAAGAAGTACA TCAAGAAGGAAATTGATGTTGAGCTCTGCGCATTGGGCCAGGTTATTCCAACTGTGATAATCATCTCTGCGATGGTGAAA AGCAATGGGCGAGCAATTGAGAAAAATATTATGATATCCACTGTTGGAGTTGATGATAACAAAGAGAGGGAAGGTCGTGT GTTTACAAAGCCTAAGCTTGCTATTCTGATGGGAAAGGCTAGGGATGTGCACCTGAGTGCTACTGTTGCTGCAACTGCAG CATGTGAGGAAGGTGCTGTCAGTAAGGCATGAAGTAACAGAGTGGTGAAAATAACAGGAGATAATGAAATTCTTCTGCTT GTAGTATGTGTAACTGGATTTACAGTCTCTGTAAATGTTCTTTCATTCTTGTAGCTTCTGTTGTGTCTCAGGAAATAGGC AATGCACATTGTGCGGTGTGGATAGTACTTGTAAATGCAGTTTTGGTACAAGACTATTGTCATTTACTTCTGTAATAAGT GTTCTTTGTATAGATGTAAGTTTTTTTAAAAATTCCTAAAATTATAAGTTACTTATAAGTTACTTATTTTTTATGAAGGA AAACATAAAAAAAGCTCTAAAAATAAAAGTTAAGACTTGGTCTTCTTAACATAATGATTGAC
CDS sequence (LotjaGi3g1v0162700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTGACGGCGGTGACTGCTGCTGAGATCAGAATCGCCAAGATCAATGGCGGCGACGAGAACGCGAAGAAGAAGAT CGCTCGCATTCAGGTTTCCAAGAACAAGAAGCCGTTGTTTGTCTACCTCACCCTCGCCAAGAAGTACATCAAGAAGGAAA TTGATGTTGAGCTCTGCGCATTGGGCCAGGTTATTCCAACTGTGATAATCATCTCTGCGATGGTGAAAAGCAATGGGCGA GCAATTGAGAAAAATATTATGATATCCACTGTTGGAGTTGATGATAACAAAGAGAGGGAAGGTCGTGTGTTTACAAAGCC TAAGCTTGCTATTCTGATGGGAAAGGCTAGGGATGTGCACCTGAGTGCTACTGTTGCTGCAACTGCAGCATGTGAGGAAG GTGCTGTCAGTAAGGCATGA
Protein sequence (LotjaGi3g1v0162700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVTAVTAAEIRIAKINGGDENAKKKIARIQVSKNKKPLFVYLTLAKKYIKKEIDVELCALGQVIPTVIIISAMVKSNGR AIEKNIMISTVGVDDNKEREGRVFTKPKLAILMGKARDVHLSATVAATAACEEGAVSKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 124 | 120 | 6.0E-41 | – | |
| PANTHER | 5 | 124 | 120 | 6.0E-41 | ||
| Gene3D | 26 | 135 | 110 | 1.9E-23 | ||
| SUPERFAMILY | 32 | 115 | 84 | 1.83E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0162700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…