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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0162700 |
| Transcript ID | LotjaGi3g1v0162700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alba DNA/RNA-binding protein; TAIR: AT3G04620.1 Alba DNA/RNA-binding protein; Swiss-Prot: sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160; TrEMBL-Plants: tr|A0A151SD76|A0A151SD76_CAJCA Uncharacterized protein family; Found in the gene: LotjaGi3g1v0162700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22123447..22125312) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTCGTACATATTTGATAATGCATTCATCAGATCTGCAGTAGTCTTCTCATTCACAATGTTGAGCGCAACATTTTTGG ATAACGTCAATCTGATCAAACCAAGGGCATGTCGATCTAACAGGCTCTAGTCTTCCTGCTTCATGTCATTTGGCTTCTTC CCTGTCAAGGGTTGATACAACTTCTTTTGGTACAGATAGTCCTCTATCTGCATCTTCCAAAACCCGAAGTCTCTGCCATC GAACCTCTCAATCTTCACCTTCCCTTCTTCCAACGCCATTGCTCCCACTTCTTCCTCTAAACTGAGGATCTATCACACGA ACCAGAAGCTCTGATACCAGTTGTTGAGAGCAATAATAGAAAAGAGATAAGAGAGAAATAAATATCACACAAGAATTTTT AACGTGGTTCAGAACACAATGTGTGTACCTACGTCCACGGCTACACTAGGTAGTAATATTTCTCTTTGGTATGTATAATG CTTACAATGAGGTGCCTATATATAGTAGGAGTAAGTCAACCTCCTCCTTATTCTAAGCGATGTAAGACTTACAAATAGAC TACATAAGCGATGTGGGACTACATAACATAACATTTATGTCTTCCTCAGTGATAATATTTTCACTTAAGCAACCAGTTCT CGAGCTTGCTCCCCCCCCCCCCCCTCCCCCCTCTGGCATGTTCTTCTTCTCCGTCGCGTCCCTCCGGCGACTTCTTCTCT GTCGCGTCCCTCCGACGACTTCTTCTCCGTCGCGTCTCTTCCTCTTTGGCGACTTCTTCTTCTCCGTCGCGTCACTCCCC TATGGCGACTTCTTCTTCTCTGCCGCGTTCTTATCCTCCGGCGGCGACCTCTTCTCGGTGGCAAAGTCCATCAGCTCTTA CAAGTATCACACCTTCTCCCAGATCTTCACCCCACAAGCAAAGAGGCTGAGAAGTCAGAACAAAGCCCCAAACCGAAACT GCTAGGCTCCTGATCTGCCATCTCCTATATCTGCCATCTCCCCCATCTCCTTCACACGTCGATTCTGGTACTGCAACGTC TAAGGGAGGGGACTCGTGAGAAGATTTGGGGTGAACGAAGTTGTTACAGATGGTGATTTGGTGGGGAGGGAAATAGGGTT TGGCAGATAGATTTGTTGGCCTTCTCTGTAATTGGAATTGGAATAAAGTGATAGCAAGATTGTTTGAGAAGAAAGAGAGA GAATGGAAGTGACGGCGGTGACTGCTGCTGAGATCAGAATCGCCAAGATCAATGGCGGCGACGAGAACGCGAAGAAGAAG ATCGCTCGCATTCAGGTTTCCAAGAACAAGAAGCCGTTGTTTGTCTACCTCACCCTCGCCAAGAAGTACATCAAGAAGGA AATTGATGTTGAGCTCTGCGCATTGGGCCAGGTTATTCCAACTGTGATAATCATCTCTGCGATGGTGAAAAGCAATGGGC GAGCAATTGAGAAAAATATTATGATATCCACTGTTGGAGTTGATGATAACAAAGAGAGGGAAGGTCGTGTGTTTACAAAG CCTAAGCTTGCTATTCTGATGGGAAAGGCTAGGGATGTGCACCTGAGTGCTACTGTTGCTGCAACTGCAGCATGTGAGGA AGGTGCTGTCAGTAAGGCATGAAGTAACAGAGTGGTGAAAATAACAGGAGATAATGAAATTCTTCTGCTTGTAGTATGTG TAACTGGATTTACAGTCTCTGTAAATGTTCTTTCATTCTTGTAGCTTCTGTTGTGTCTCAGGAAATAGGCAATGCACATT GTGCGGTGTGGATAGTACTTGTAAATGCAGTTTTGGTACAAGACTATTGTCATTTACTTCTGTAATAAGTGTTCTTTGTA TAGATGTAAGTTTTTTTAAAAATTCC
CDS sequence (LotjaGi3g1v0162700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTGACGGCGGTGACTGCTGCTGAGATCAGAATCGCCAAGATCAATGGCGGCGACGAGAACGCGAAGAAGAAGAT CGCTCGCATTCAGGTTTCCAAGAACAAGAAGCCGTTGTTTGTCTACCTCACCCTCGCCAAGAAGTACATCAAGAAGGAAA TTGATGTTGAGCTCTGCGCATTGGGCCAGGTTATTCCAACTGTGATAATCATCTCTGCGATGGTGAAAAGCAATGGGCGA GCAATTGAGAAAAATATTATGATATCCACTGTTGGAGTTGATGATAACAAAGAGAGGGAAGGTCGTGTGTTTACAAAGCC TAAGCTTGCTATTCTGATGGGAAAGGCTAGGGATGTGCACCTGAGTGCTACTGTTGCTGCAACTGCAGCATGTGAGGAAG GTGCTGTCAGTAAGGCATGA
Protein sequence (LotjaGi3g1v0162700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVTAVTAAEIRIAKINGGDENAKKKIARIQVSKNKKPLFVYLTLAKKYIKKEIDVELCALGQVIPTVIIISAMVKSNGR AIEKNIMISTVGVDDNKEREGRVFTKPKLAILMGKARDVHLSATVAATAACEEGAVSKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 124 | 120 | 6.0E-41 | – | |
| PANTHER | 5 | 124 | 120 | 6.0E-41 | ||
| Gene3D | 26 | 135 | 110 | 1.9E-23 | ||
| SUPERFAMILY | 32 | 115 | 84 | 1.83E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0162700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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