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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0163300 |
| Transcript ID | LotjaGi3g1v0163300.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox leucine-zipper protein; TAIR: AT5G60690.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9SE43|REV_ARATH Homeobox-leucine zipper protein REVOLUTA; TrEMBL-Plants: tr|Q147T3|Q147T3_LOTJA Class III HD-Zip protein REV1; Found in the gene: LotjaGi3g1v0163300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22228844..22233511) extracted from Lotus japonicus Gifu genome v1.2.
CCTGGTCCGGATTCGGTTGGGATCTTTACCATTTCACAAAGTTGCAGTGGCGTGGCTGCTCGAGCGTGTGGTTTGGTTAG TTTAGAACCTAATAAGGTAATTAAAAAGGCCAAATACGATTTGTGATTTTCAGTAATTTCTTGATATGAAGTCTGTAAGC TCTCTGAACTTGCTAAATTCCAAAATTTACATAGGTTGCAGAGATTCTAAAAGATCGTCTGTCTTGGTTTCGAGATTGTC GGAGTCTTGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGGACAATTGAGCTTGTTTACACTCAGGTGAACAATCAA ATGTGAAATGTTAGATCCATTAGTTATTTTCTGAACTTATGAGTAAACTTTAAGTTTGCCACAGACATATGCTCCTATGA CATTGTCTCCTGCCCGGGATTTCTGGACTCTAAGATACACTACAACTTTGGAAAATGGCAGTCTTGTGGTGAGTATTCTT GTTTTGTTTAATATCCAACACAACACCGTTATTGCATAGGGTTAAATATAAAACAACATCCATCCTGGTTTCTTTTAATT GTCGTTTTAAAGGAAGATGATCTAATGTAATTGCACTTATATGCATTCTGATTCACTTAGCCTGTTTGGAACCACTTCTC GGGAGCCATATAGTCACTTCTACATATCAGCTACAAGTTGTAGCTTTTGGTGAAATCTGCACTTGATTTTGTGCCTAATT TATTCCAAACACACTCTGAAGGTTTGTGAGAGGTCACTCTCCGGTTCTGGTGCCGGACCAAATGCTGCTGCTGCCCATCA GTTTGTGAGGGCTGAAATGCTGCCTAGTGGCTACTTGATTCGACCGTGTGAAGGTGGAGGATCGATCATTCACATTGTAG ACCACCTAAACCTACAGGTTTGACTTTGTGGCAATTAGCTTGGATATTTTTAATTTCCTTTAATATACATTAAATTGCTT AATCTTTTTTTCTAGGCATGGAGTGTACCGGAAGTGCTGCGACCACTTTATGAATCATCAAAAGTGGTAGCTCAGAGAAT GACAATTGCAGTAAGTAATTCTCATTTCATCTGATTTTCCTCATCTTTTTCTAAGAAGACAGGTATTAATACAATGGCGT TTGTGACAGGCACTTCGCTATGTCAGGCAAATAGCTCAAGAAACAAGTGGTGAAGTGGTGTATGGGTTAGGTAGGCAACC TGCTGTTCTGAGAACTTTTAGCCAAAGGTTGAGCAGGTATGCCACATTAAATAGTTTGTTCTCTTGAAAACTATTTCAGT CTGCTGTTATCAAAATGATCTGTTGTATTATTGGAAAATTGATACATCACAATTACAGGGGCTTCAATGACGCTGTCAAT GGGTTCAATGATGATGGCTGGTCTGTTCTAAACTGTGATGGTGCTGAGGATGTTATTATTTCGGTTAATTCAACGAAGAA TTTAAGTGGCACGTCTAATCCAGCAAGTTCCCTCACATTTGCTGGAGGAGTTCTCTGTGCAAAAGCTTCTATGTTACTTC AAGTGAGTGTGAGACCCCATTGGCATGACGCGTTGAATGATTTTTCTTTAATATTACATTTATATCTTGCAAATGTTATA TGACAAATTTTCACTCTGCTTTACTTGCAGAACATCCCTCCTGCTGTCTTAGTACGCTTTCTGAGGGAACATCGCTCGGA ATGGGCTGATTTTAATGTGGATGCCTACTCTGCTGCATCACTTAAAGCTGGCTCGTATGCCTATCCAGGAATGAGGCCTA TGAGGTTCACAGGCAATCAAATAATCATGCCTCTTGGGCATACAATTGAACATGAAGAGGTATGTATGCCCTTGCTCATG CATCGATTCCGGATGGAAGTGCCCCTTAATTTATGTCACGGATTCATTTGAGAGATTTTGGCTTGCATGACAAGGAGTTC TTTATTTTTTATTCACATGTTAAATGCATATTTGCTTTGGGCTAAGATTTGGTTTATAAATTTGTGCCTGTTACGCATTT CAGTAGAATGATACCAATCATTTCTGGCCAGCTCACATCAAAAATTTATATTTGCAAGCGACGTTTATGCTATTGTTTTG TTAACATTCTAGATGCTTGAAGTTATCCGGCTTGAAGGTCACTCTCTCGCTCAAGAAGATGCTTTTGCTTCCAGGGACGT TCATCTCTTACAGGTTCTCCCTCTGACTCTAGTTGGAATTGAGGATATTATCTGTATTATGTTTCTACTTATCTTGCATA AACTGAGTCAGATTAAATGGTGACTTGTCATCTCTGGGAAAATTTTCTATTTTCTTCCTTTGAATCTATTATTTTGTGAC AAATATCACTGAAAAAGGAAGATTCTCAGTGTATAATACTCTAAGCAGAGTTCACAATTAGAAATCTGTGTCTTAATTCA TGATATAGCTGGACTTGTGCTGACATTATCTCAGTAAAGGTTATTTTTGGAAATAACAATTTCCAATTTCAGTATTTGCA AGTTGCAACTGTCTATTATACTCTGATGAAAGGAAACATATGTGAAGGGGATTAGCGGTGTACACAAAATACGACAAATG AAAGTTGGGCTGGGCGCCTGGGCCAGACCAAAATATTTATGTGGGCTTGTATTTGTCAAGCTTAGTCCATTTATTTCATC AGACTTGGCTCATTTTGACAGCGCTGACATGAGTGCACAAAATTTTTCTGCATTCCACCTCATTGTGGCTTTTTACTTGC AACATCAGTTTAAATCTGAAGAAATTGCATGAAATTCTGGCTAGCTTGTTACTTATATTATTTGTGCCCCGTATGGATGC ACTTCATCTATAGTTCATTTTTATGTGGTCTTAGTTTTACTAAGAATGTGATAAAATATAAATAGTCAGGTACTAAGGAC CCTTTTTTGTTTCTTCGTTATTGTTTTGTAACAGTTATGTAGTGGAATTGATGAGGATGCTGTGGGAGCTTGCTGTGAGC TCATATTTGCTCCAATTGATGAAATGTTCCCAGACGATGCTCCGTTGGTTCCTTCGGGTTTCCGCATTATCCCATTAGAT TCAAAACCAGTTGAGTCCTGTTTCTTCGTATCTGATTTTTCTCCTACTGATACTGTTGTTCATATATGGAGCCGCACAGT AATCAAGTTAATTTGATATTTTGTTTCAGGGTGATAAAAAGGACACAATGACAACAAATAAAACCTTGAATTTGACATCT GGCCTTGAAGTAGGCGCATCAACAAATCATACTGCTGGAGATGCCTCATCATGTCATAACAATCGATCAGTGTTGACTAT TGCCTTCCAGTTTCCTTTTGAGAGCAGCCTACAGGATAATGTTGCGGTCATGGCACGTCAGTATGTCCGGAGCGTGATTT CCTCCGTGCAGACGGTTTCCATGGCTATATCTCCATCTGGCACAAACCCAGCTGCTGGAGCAAAACTCTCTGTTGGCTCT CCAGAAGCTTTGACGCTAGCTCGTTGGGTCTGCCAGAGTTATAGGCAAGTGTTCTTATATATGATATCTCTGCTCAATAT TTCCAAAAGTCTAAGTTAATGCATGCATTGTCTATCTCAAGTGGGTTGAGAATTATTTGGCTTGGAAATTGGAATGTATT TTTCTCCTGTCACACTAATATCTATGATAAACGATTCACATTGCCATCTGTTCAAGCATTGTAGTTATATGTTCATTTTA AAAAAGGCATCTCACATGTTTCTCTATTAATCTATCTTTCCATAAATCTTATCTGAAAACAGTTATTATTTGGGGACTGG ACTGCTGAGATCTGATTCTCTTGTGGGTGATTTGGTACTGAAACATTTGTGGCATCATCAGGATGCCATTTTGTGCTGTT CTTTGAAGGTATGCTTATAATATTCATGGTACAGTTTATCCTTTTGAAAGTAATGAAATTTTGCACTGGAATTGGGATGT GTGTGACGATATTCATATGGTTCTTTGTTCGGAATTGCAGTCAGTGCCCATGTTCATATTTGCAAATCAGGCTGGGCTTG ACATGTTGGAAACAACTCTTGTGGCTTTACAAGACATCACTTTGGATAAAATATTTGATGAGTCTGGCCGCAAGGCATTG TTTGCAGATTTCGCCAAGTTAATGCAGCAGGTAATATCCTCATGCGAGCATGTTCACATCAAAAGGCCCAAGCGCCAAAT TAATATGACAAGAATGTCATCTTCTTCTAAAACTAAACTCCCTATCTGCCCTCCGACTAGAAATGAAATTTGAGGTTCTT ACTTCAAAAATAAATAAGAAATTAACATCTCAATTAGTATGCTGTTTCTGTAAAATGTAAATGGATGAAAGCCTGTTTGG ATCAGCTTCTGTTCTCTCAAAAGCAATTCTGACACCCAGAGTTCACTCGCATAAAGTTCTTCGTGTAATTAATTTTGGTT TTAGAATCTATTGTAGAAGAGTTTCCAAACATGCACTGAATTTTTGGTATGCTTTTTTCTATTGTAGAAGAGTTTCGAAA AATGCATTGAATTGTTGTATTCTTTTTTATTCCTTCAGGGATTTGCTTATCTGCCAGCTGGGATCTGTATGTCCACAATG GGGCGGCATGTTTCATATGAGCAAGTCATCGCCTGGAAAGTGCTTGCTGAAGAAGATAACAGTGTTCATTGCTTAGCTTT CTCTTTCATAAATTGGTCATTTGTATGA
CDS sequence (LotjaGi3g1v0163300.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCCTAGTGGCTACTTGATTCGACCGTGTGAAGGTGGAGGATCGATCATTCACATTGTAGACCACCTAAACCTACA GGCATGGAGTGTACCGGAAGTGCTGCGACCACTTTATGAATCATCAAAAGTGGTAGCTCAGAGAATGACAATTGCAGCAC TTCGCTATGTCAGGCAAATAGCTCAAGAAACAAGTGGTGAAGTGGTGTATGGGTTAGGTAGGCAACCTGCTGTTCTGAGA ACTTTTAGCCAAAGGTTGAGCAGGGGCTTCAATGACGCTGTCAATGGGTTCAATGATGATGGCTGGTCTGTTCTAAACTG TGATGGTGCTGAGGATGTTATTATTTCGGTTAATTCAACGAAGAATTTAAGTGGCACGTCTAATCCAGCAAGTTCCCTCA CATTTGCTGGAGGAGTTCTCTGTGCAAAAGCTTCTATGTTACTTCAAAACATCCCTCCTGCTGTCTTAGTACGCTTTCTG AGGGAACATCGCTCGGAATGGGCTGATTTTAATGTGGATGCCTACTCTGCTGCATCACTTAAAGCTGGCTCGTATGCCTA TCCAGGAATGAGGCCTATGAGGTTCACAGGCAATCAAATAATCATGCCTCTTGGGCATACAATTGAACATGAAGAGATGC TTGAAGTTATCCGGCTTGAAGGTCACTCTCTCGCTCAAGAAGATGCTTTTGCTTCCAGGGACGTTCATCTCTTACAGTTA TGTAGTGGAATTGATGAGGATGCTGTGGGAGCTTGCTGTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCAGACGA TGCTCCGTTGGTTCCTTCGGGTTTCCGCATTATCCCATTAGATTCAAAACCAGGTGATAAAAAGGACACAATGACAACAA ATAAAACCTTGAATTTGACATCTGGCCTTGAAGTAGGCGCATCAACAAATCATACTGCTGGAGATGCCTCATCATGTCAT AACAATCGATCAGTGTTGACTATTGCCTTCCAGTTTCCTTTTGAGAGCAGCCTACAGGATAATGTTGCGGTCATGGCACG TCAGTATGTCCGGAGCGTGATTTCCTCCGTGCAGACGGTTTCCATGGCTATATCTCCATCTGGCACAAACCCAGCTGCTG GAGCAAAACTCTCTGTTGGCTCTCCAGAAGCTTTGACGCTAGCTCGTTGGGTCTGCCAGAGTTATAGTTATTATTTGGGG ACTGGACTGCTGAGATCTGATTCTCTTGTGGGTGATTTGGTACTGAAACATTTGTGGCATCATCAGGATGCCATTTTGTG CTGTTCTTTGAAGTCAGTGCCCATGTTCATATTTGCAAATCAGGCTGGGCTTGACATGTTGGAAACAACTCTTGTGGCTT TACAAGACATCACTTTGGATAAAATATTTGATGAGTCTGGCCGCAAGGCATTGTTTGCAGATTTCGCCAAGTTAATGCAG CAGGTAGGATTTGCTTATCTGCCAGCTGGGATCTGTATGTCCACAATGGGGCGGCATGTTTCATATGAGCAAGTCATCGC CTGGAAAGTGCTTGCTGAAGAAGATAACAGTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA
Protein sequence (LotjaGi3g1v0163300.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLR TFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEDVIISVNSTKNLSGTSNPASSLTFAGGVLCAKASMLLQNIPPAVLVRFL REHRSEWADFNVDAYSAASLKAGSYAYPGMRPMRFTGNQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFASRDVHLLQL CSGIDEDAVGACCELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDTMTTNKTLNLTSGLEVGASTNHTAGDASSCH NNRSVLTIAFQFPFESSLQDNVAVMARQYVRSVISSVQTVSMAISPSGTNPAAGAKLSVGSPEALTLARWVCQSYSYYLG TGLLRSDSLVGDLVLKHLWHHQDAILCCSLKSVPMFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALFADFAKLMQ QVGFAYLPAGICMSTMGRHVSYEQVIAWKVLAEEDNSVHCLAFSFINWSFV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 511 | 511 | 6.4E-269 | – | |
| SUPERFAMILY | 1 | 62 | 62 | 6.32E-5 | – | |
| PANTHER | 1 | 511 | 511 | 6.4E-269 | – | |
| ProSiteProfiles | 1 | 69 | 69 | 10.686 | ||
| Pfam | 1 | 59 | 59 | 1.9E-12 | ||
| Pfam | 386 | 530 | 145 | 3.8E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi3g1v0163300.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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