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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013978
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 31 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.871s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0278959.1
n.a. Class III HD-Zip protein [Medicago truncatula] gi|357466691|ref|XP_003603630.1| chr0 144776637 144777394 +
2 domain predictions
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Lj3g3v0274640.1
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Cicer arietinum] gi|502081133|ref|XP_004486776.1| chr3 1657712 1665194 +
2 domain predictions
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Lj3g3v0274640.2
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Cicer arietinum] gi|502081133|ref|XP_004486776.1| chr3 1658922 1665194 +
2 domain predictions
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Lj3g3v1074990.1
n.a. TPA_inf: class III HD-Zip protein REV1 [Lotus japonicus] gi|109729905|tpg|DAA05766.1| chr3 14460388 14466975 +
2 domain predictions
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Lj3g3v1074990.2
n.a. TPA_inf: class III HD-Zip protein REV1 [Lotus japonicus] gi|109729905|tpg|DAA05766.1| chr3 14460388 14466975 +
2 domain predictions
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Lj3g3v2315440.1
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Glycine max] gi|356526089|ref|XP_003531652.1| chr3 28367090 28375777 +
2 domain predictions
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Lj3g3v2315440.2
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Glycine max] gi|356526089|ref|XP_003531652.1| chr3 28367973 28375777 +
2 domain predictions
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Lj3g3v2315440.3
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-15-like [Glycine max] gi|356522958|ref|XP_003530109.1| chr3 28370655 28375777 +
2 domain predictions
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Lj3g3v3085530.1
n.a. PREDICTED: homeobox-leucine zipper protein REVOLUTA-like [Glycine max] gi|356539327|ref|XP_003538150.1| chr3 38592356 38598815 -
2 domain predictions
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Lj6g3v1654310.2
n.a. PREDICTED: homeobox-leucine zipper protein ATHB-14-like [Glycine max] gi|356533043|ref|XP_003535078.1| chr6 18590800 18596580 +
2 domain predictions
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LotjaGi1g1v0406500.1
n.a. Homeobox leucine-zipper protein; TAIR: AT4G32880.1 homeobox-leucine zipper protein ATHB-8; Swiss-Prot: sp|Q39123|ATHB8_ARATH Homeobox-leucine zipper protein ATHB-8; TrEMBL-Plants: tr|A0A0L9TDD2|A0A0L9TDD2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0406500 LjG1.1_chr1 89542742 89549690 +
2 domain predictions
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LotjaGi1g1v0406500.3
n.a. Homeobox leucine-zipper protein; TAIR: AT4G32880.1 homeobox-leucine zipper protein ATHB-8; Swiss-Prot: sp|Q39123|ATHB8_ARATH Homeobox-leucine zipper protein ATHB-8; TrEMBL-Plants: tr|A0A0L9TDD2|A0A0L9TDD2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0406500 LjG1.1_chr1 89543309 89549302 +
2 domain predictions
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LotjaGi2g1v0359200.2
n.a. Homeobox leucine-zipper protein; TAIR: AT5G60690.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9SE43|REV_ARATH Homeobox-leucine zipper protein REVOLUTA; TrEMBL-Plants: tr|A0A0L9V6I5|A0A0L9V6I5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0359200 LjG1.1_chr2 85647595 85654704 -
2 domain predictions
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LotjaGi2g1v0359200.3
n.a. Homeobox leucine-zipper protein; TAIR: AT5G60690.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9SE43|REV_ARATH Homeobox-leucine zipper protein REVOLUTA; TrEMBL-Plants: tr|V7AJI7|V7AJI7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0359200 LjG1.1_chr2 85648308 85649686 -
2 domain predictions
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LotjaGi2g1v0359200.4
n.a. Homeobox leucine-zipper protein; TAIR: AT5G60690.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9SE43|REV_ARATH Homeobox-leucine zipper protein REVOLUTA; TrEMBL-Plants: tr|I1LL54|I1LL54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0359200 LjG1.1_chr2 85648308 85652748 -
2 domain predictions
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LotjaGi3g1v0020600.1
n.a. Homeobox leucine-zipper protein; TAIR: AT1G52150.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9ZU11|ATB15_ARATH Homeobox-leucine zipper protein ATHB-15; TrEMBL-Plants: tr|A0A151SHL8|A0A151SHL8_CAJCA Homeobox-leucine zipper protein ATHB-15; Found in the gene: LotjaGi3g1v0020600 LjG1.1_chr3 2111511 2119188 +
2 domain predictions
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LotjaGi3g1v0163300.2
n.a. Homeobox leucine-zipper protein; TAIR: AT5G60690.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9SE43|REV_ARATH Homeobox-leucine zipper protein REVOLUTA; TrEMBL-Plants: tr|Q147T3|Q147T3_LOTJA Class III HD-Zip protein REV1; Found in the gene: LotjaGi3g1v0163300 LjG1.1_chr3 22226969 22233949 +
2 domain predictions
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LotjaGi3g1v0163300.3
n.a. Homeobox leucine-zipper protein; TAIR: AT5G60690.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9SE43|REV_ARATH Homeobox-leucine zipper protein REVOLUTA; TrEMBL-Plants: tr|Q147T3|Q147T3_LOTJA Class III HD-Zip protein REV1; Found in the gene: LotjaGi3g1v0163300 LjG1.1_chr3 22227784 22233511 +
2 domain predictions
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LotjaGi3g1v0163300.4
n.a. Homeobox leucine-zipper protein; TAIR: AT5G60690.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9SE43|REV_ARATH Homeobox-leucine zipper protein REVOLUTA; TrEMBL-Plants: tr|Q147T3|Q147T3_LOTJA Class III HD-Zip protein REV1; Found in the gene: LotjaGi3g1v0163300 LjG1.1_chr3 22227803 22233511 +
2 domain predictions
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LotjaGi3g1v0163300.5
n.a. Homeobox leucine-zipper protein; TAIR: AT5G60690.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9SE43|REV_ARATH Homeobox-leucine zipper protein REVOLUTA; TrEMBL-Plants: tr|Q147T3|Q147T3_LOTJA Class III HD-Zip protein REV1; Found in the gene: LotjaGi3g1v0163300 LjG1.1_chr3 22227803 22233511 +
2 domain predictions
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LotjaGi3g1v0163300.6
n.a. Homeobox leucine-zipper protein; TAIR: AT5G60690.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9SE43|REV_ARATH Homeobox-leucine zipper protein REVOLUTA; TrEMBL-Plants: tr|Q147T3|Q147T3_LOTJA Class III HD-Zip protein REV1; Found in the gene: LotjaGi3g1v0163300 LjG1.1_chr3 22228844 22233511 +
2 domain predictions
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LotjaGi3g1v0369200.1
n.a. Homeobox leucine-zipper protein; TAIR: AT1G52150.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9ZU11|ATB15_ARATH Homeobox-leucine zipper protein ATHB-15; TrEMBL-Plants: tr|A0A151SHC3|A0A151SHC3_CAJCA Homeobox-leucine zipper protein ATHB-15; Found in the gene: LotjaGi3g1v0369200 LjG1.1_chr3 75590190 75599634 +
2 domain predictions
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LotjaGi3g1v0369200.2
n.a. Homeobox leucine-zipper protein; TAIR: AT1G52150.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9ZU11|ATB15_ARATH Homeobox-leucine zipper protein ATHB-15; TrEMBL-Plants: tr|A0A151SHC3|A0A151SHC3_CAJCA Homeobox-leucine zipper protein ATHB-15; Found in the gene: LotjaGi3g1v0369200 LjG1.1_chr3 75590708 75598892 +
2 domain predictions
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LotjaGi3g1v0369200.3
n.a. Homeobox leucine-zipper protein; TAIR: AT1G52150.2 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9ZU11|ATB15_ARATH Homeobox-leucine zipper protein ATHB-15; TrEMBL-Plants: tr|A0A151SHC3|A0A151SHC3_CAJCA Homeobox-leucine zipper protein ATHB-15; Found in the gene: LotjaGi3g1v0369200 LjG1.1_chr3 75590714 75598892 +
2 domain predictions
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LotjaGi3g1v0369200.4
n.a. Homeobox leucine-zipper protein; TAIR: AT1G52150.2 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9ZU11|ATB15_ARATH Homeobox-leucine zipper protein ATHB-15; TrEMBL-Plants: tr|A0A151SHC3|A0A151SHC3_CAJCA Homeobox-leucine zipper protein ATHB-15; Found in the gene: LotjaGi3g1v0369200 LjG1.1_chr3 75591113 75598892 +
2 domain predictions
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LotjaGi3g1v0369200.5
n.a. Homeobox leucine-zipper protein; TAIR: AT1G52150.2 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q9ZU11|ATB15_ARATH Homeobox-leucine zipper protein ATHB-15; TrEMBL-Plants: tr|A0A151SHC3|A0A151SHC3_CAJCA Homeobox-leucine zipper protein ATHB-15; Found in the gene: LotjaGi3g1v0369200 LjG1.1_chr3 75591347 75598892 +
2 domain predictions
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LotjaGi4g1v0386000.1
n.a. Homeobox leucine-zipper protein; TAIR: AT1G30490.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q6AST1|HOX32_ORYSJ Homeobox-leucine zipper protein HOX32; TrEMBL-Plants: tr|A0A151UC57|A0A151UC57_CAJCA Homeobox-leucine zipper protein HOX32; Found in the gene: LotjaGi4g1v0386000 LjG1.1_chr4 76432274 76439014 +
2 domain predictions
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LotjaGi4g1v0386000.2
n.a. Homeobox leucine-zipper protein; TAIR: AT1G30490.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q6AST1|HOX32_ORYSJ Homeobox-leucine zipper protein HOX32; TrEMBL-Plants: tr|A0A151UC57|A0A151UC57_CAJCA Homeobox-leucine zipper protein HOX32; Found in the gene: LotjaGi4g1v0386000 LjG1.1_chr4 76432751 76438764 +
2 domain predictions
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LotjaGi4g1v0386000.3
n.a. Homeobox leucine-zipper protein; TAIR: AT1G30490.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q6AST1|HOX32_ORYSJ Homeobox-leucine zipper protein HOX32; TrEMBL-Plants: tr|A0A151UC57|A0A151UC57_CAJCA Homeobox-leucine zipper protein HOX32; Found in the gene: LotjaGi4g1v0386000 LjG1.1_chr4 76432759 76438764 +
2 domain predictions
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LotjaGi6g1v0271800.1
n.a. Homeobox leucine-zipper protein; TAIR: AT2G34710.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|O04291|ATB14_ARATH Homeobox-leucine zipper protein ATHB-14; TrEMBL-Plants: tr|I1L0E4|I1L0E4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0271800 LjG1.1_chr6 58640145 58646081 +
2 domain predictions
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LotjaGi6g1v0271800.2
n.a. Homeobox leucine-zipper protein; TAIR: AT2G34710.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|O04291|ATB14_ARATH Homeobox-leucine zipper protein ATHB-14; TrEMBL-Plants: tr|K7LBF5|K7LBF5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0271800 LjG1.1_chr6 58640733 58645807 +
2 domain predictions
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