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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0163700 |
Transcript ID | LotjaGi3g1v0163700.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Auxin response factor; TAIR: AT2G28350.1 auxin response factor 10; Swiss-Prot: sp|Q653H7|ARFR_ORYSJ Auxin response factor 18; TrEMBL-Plants: tr|G7IRU1|G7IRU1_MEDTR Auxin response factor; Found in the gene: LotjaGi3g1v0163700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22264295..22268830) extracted from Lotus japonicus Gifu genome v1.2.
GTCTAGAGTGTCTATGTCCGTGTCCGTGTATGTAGAAGAGAAAAAGTGGTTGTCCCTTTCTTTTCCCTTCTTTCCCTGAG ATCTGAGAGAAACCATCCAAAAGATAAGAGCCAGAAACAAAGAAAAATCACAACAAGAAATCTTTGCATGATGGAACTTG TTCAAGGTATGATTCAGAATCTCTTCTAGTAGCTACTATCTGTTGAAATTGTATTGAAAATCTCAGTATGTTCATAATGT TTCAGGTAACACTTTGGTATTGATTGAGTAAACCAGAAGAAAACCAACTCAGAAAGATTGGAAAATTCAGCAGCAAGAAG AACCTTTCACATGTGATGCACCTTTGAAAACAGAACGTGGGGTTGGAAGATTCACACCGTGGAACCGTGCAAGCCATCAA TCTAACTCTCCCAAACACATTTTCACTCTCTAACAAAAGGTGAAAGCATTTTCTCTTGTTTCAACAAAACAGAGTAAAAC AGAACAGAGTACTCTCTCTGTTTCACCTTCTGATTGTTCAGCTCATTTTGGATCTCTCTTGACTCCACAGGATTCACTGA GGGAAACCCATCAGGAAAACAATCAAACCTGCTTTGTGGCACTGTTTGATCACTCATTCAATGAAGGAAGCTGACAGAAG CAGCTTGGATCCACAGCTATGGCACGCATGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTGTTCTACT TCCCACAGGGGCACGCGGAACACGCACAGTGCAGCGTGGACTTCGCAGCTTCCCTAAGAATCCCACCGCTCATCCTCTGC CGCGTCGCCGCCGTGAAATTCTCCGCCGACCCAGAAACCGATGAAGTGTTCGCCAAGATGAGGCTGGTTCCCCTGAGAAA CTCAGAGCTTGATCACGAAGATGGCGGTGATGGTGCTTCTGATGGAAACGCCACCGAGGGTTCAGAGAAGCCAGCGTCGT TCGCCAAGACGTTAACACAGTCCGATGCTAACAACGGTGGCGGTTTCTCTGTTCCGCGGTACTGCGCGGAGACCATTTTC CCACGGCTGGATTACTCGGCTGAACCGCCGGTTCAGACCGTCATCGCCAAGGACGTTCACGGCGAGGTTTGGAAGTTCCG GCACATATACAGAGGCACGCCGCGCCGGCACTTGCTGACAACCGGGTGGAGCAGTTTTGTCAACCAGAAGAAGCTCGTTG CAGGGGACTCTGTCGTGTTTCTGAGAGCTGAAAACGGCGATCTCTGCGTCGGGATTCGCCGGGCCAAGAGGGGTATCGGC GGCGGGGCAGAGGTGCCGTCCGGGTGGAGTTCCGGCGCCGGTGCCGGAAACTGCGGTCTTGGGCCTTATGGGGCTTTTTC TGTGTTCTTGAGAGAAGAAGGTAAGCTTTTGAGGAATGGTTGTGGCGGTGGCAACTCGAGTCCTGGCGGTGTTGGAAGGC CAAAAGTGAGTGGTGAATCTGTGAGGGAAGCTATGGCATTGGCTGGGAGCAATCAAGCTTTTGAGGTTGTTTACTATCCG AGAGCTAGTACTCCTGAGTTTTGCATCAAGACTTCAGCTGTGAAAGCTGCTATGAGGATTCAATGGTGTTCTGGGATGAG GTTTAAGATGCCATTTGAAACTGAGGATTCTTCAAGGATAAGCTGGTTTATGGGGACCATAGCTTCTGTTCAGGTTGTTG ATCCTATACGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTACTCTTCTAGTCTCACTCTTTGTGGTTAGAATTTCAC AAATTTAACACACTGGAATTTTGGTTTTAGAGAACATGCATGTTTTGACGAATCTGGTTTCTAAACTGTTATATTAGTCC ATATGAGCCAGAAGGAGCTCAATTCTTATGTCTCTTTGGGGCTGTGTTTGTGCTTTGTTAAGGTTCAGATTTTGTAAAGT TTTCTTGAGAATCTGGTTATGTTAGTGCGTGTTTGGATCAACGTTTGTCACAATTGATTTTCAGTAAAATCGATTTCAGT AGAATTGATTATTAGTAAAAATGGGGTGAAAGTGAAGTGTTTTATGTTTCGAACTTTGGATATATTAATGAAAAAAGTGA GTTTTGTTGGATAATGTTGTGAAATTCAGTTGCAAAATCTCACAATTGATTATGTTAGACGAGCTTATTCTAGAATGGGC ATGAAATCAACTCTAGAAAATGACTCTCAAACATCAGTATTTTCATCCAAAATTTGTTTTGCTACAACGGAATTGATTAT GTGGTTTCCCGACGAAAAACCAAACAAACTCTTAATATGTCGCTGTTCTTGATCTATGAACATTTTGGTTTCAGAGTTTG AACTGCCAATTTTCATTAGGGAATGTTTGGTTTTTTTACACTTGATTGTTTCGAAATCTTTCAACAGATGATTCATAATA CACAATTAATGCCTAATGGTATTTAGAAGCTTCTGTGATGAGTAGCTTCTTGGTGCCAGTATTGATTCAGCAGAAATAGA AGCTGGTCCAAACATGCTTTTAATCTTTTAGAAAGACTTTCATGCAACAACCTTGATTGATCTTGTTAATATCACTGCAG GTTACTTGGGACGAGCCAGATTTGCTACACAATGTGAAGCGTGTAAGCCCGTGGCTGGTTGAGTTAGTCTCAAACATGTC AACCATCCACCATCTCACACCCTTCTCTCCTCCGCGGAAGAAGCTCCGGTTTCCGCCACACCCGGACTTCCCGCTTGACA TTCAATTTCCGTTACCGGCGTTTTCAGGCAACCCCCTCGGGCCTAGCAGCCCCTTGTGTTGTCTATCTGACAATGCTCCT GCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTCTCAGATATCCACCTCCACAACAAACTGCAGTTGGG GGTGCTTCCAACTAACATAACCAACCATGATCATAAAAGCAAGGAAAGCTTATCATGCTTGCTCACCATGGGAAATTCTC AAAAAAGTTTGGAGAAATCTGATGATGATGTGAAGAGACACCAATTTTGGCTTTTTGGTAAACCGATACTCACTGAGCAA CAAATTTCTAGAAGAAGAGCTTCTAGTGATGATGATAATGTGTTGTTGTCTCAGAATTGTAATTCACCAAAGAAAGAGAA GTGGTTTTTTGGTGACTCTCAAATCCAATCATCACCAGAAAAGTCTTCTACTACTTCTAGTGGTGAATTCTCTTGGCAAC TTGGTTTGGACACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTGGGAAGAACACTGGACCTGTCACGTGTTGGT TCTTATGAAGAGCTTTATAGGAGACTGGCCAACATGTTTGGAATGGAAAGGTCTGAGCTGTTGAGTCATGTGCTCTACCG TGACTCCACAGGTGCTGTTAAACATACTGGTGAAGAACCCTTCAGGTACAATACAACCTTTTCTTTTTTCATGTTTTTAA CTGGTGAATGTTTTGTTGGAGTTTTGTAATGCTTAATGGGGGGTTTTAATTTTGTTTAATCATCACATTGCAGTGACTTC ATGAAGACAGCAAAAAGATTGACCATTCTGACAGATTCTGCAGGCAGCAAAGATACTAGAAGGTAAAATTTAAAAAATAA CTCGAAATTGAAATATTCATATAGCATGCTGGATCTTTTTTTCCCTCATAATCAATGTTGAGGTAAACAGAAGCTACTTA CCAAAGTTTCTCCCCATAATTGATTCTAGTTTAAAATCAATTCTAGAATGAGTTCCATACATGCTATAGTAGGAATTGGA TTCCCTGGCAGCAGGGAATTGCTACATTCACTCTGTCACGCAATCTGAGTTGTTCGGTAAAAGAACGTTTAGATTTTAAA TTTATATCTACTGTCTGATCTTGAATTTTTTATGAAGTATATGAACCGACTAATCTTGATCATATGACTCAATTTGCTTG ACTGAGCGAATGCATGGTATCCGGTGCAGGGAACCTGAATCACTAAGAGTATTTTTTACTTTTGCAAGTGTTCCTCTATG TGACTTTAAAATCTGTTTCGCAGGGTCTTGATTACAGGAACTAGGAATGCTGAACGTGGATTGGATGCGTCAAATAAGAC AGGTCCTCTGAGTATATTTGCTTAATATGGTGTGGCACATGAGACTTTGGTTTTTAGCTTTGATTTGTGAAGTTTGAAGG ATGTAGTTACCACTCTTACTTACTAGAGGAGACTGAATATGAAGTAAACTTTCACATTCTATAAAGAAGATTGCCATATT TTTGTTTATCTGAAGTTGAAGAAAACAATGATTATTCCTCTATTATGGACAATTGCTATTCAATATTAACCAAGATTTGG GTTCCCTTTTATGTAAGCTGCTAGGGATCTCCAGTGTAGTTTACACGATGCGGGGCTAAAACGTTTGTGCTACTGTGCGA AACCATTTGTTTGGATCTTATACATGCTGTGTATCATTTGATTGTGGCTCATTGATTGAATTAGCATCAAAATGTTTAAT TGGGGATAATCATTTTGCATATGTAGAGAAATGTCTTACTACCATGATCGATGAAG
CDS sequence (LotjaGi3g1v0163700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGAAGCTGACAGAAGCAGCTTGGATCCACAGCTATGGCACGCATGCGCCGGCGGCATGGTTCAGATGCCGCCGGT GAACTCCAAGGTGTTCTACTTCCCACAGGGGCACGCGGAACACGCACAGTGCAGCGTGGACTTCGCAGCTTCCCTAAGAA TCCCACCGCTCATCCTCTGCCGCGTCGCCGCCGTGAAATTCTCCGCCGACCCAGAAACCGATGAAGTGTTCGCCAAGATG AGGCTGGTTCCCCTGAGAAACTCAGAGCTTGATCACGAAGATGGCGGTGATGGTGCTTCTGATGGAAACGCCACCGAGGG TTCAGAGAAGCCAGCGTCGTTCGCCAAGACGTTAACACAGTCCGATGCTAACAACGGTGGCGGTTTCTCTGTTCCGCGGT ACTGCGCGGAGACCATTTTCCCACGGCTGGATTACTCGGCTGAACCGCCGGTTCAGACCGTCATCGCCAAGGACGTTCAC GGCGAGGTTTGGAAGTTCCGGCACATATACAGAGGCACGCCGCGCCGGCACTTGCTGACAACCGGGTGGAGCAGTTTTGT CAACCAGAAGAAGCTCGTTGCAGGGGACTCTGTCGTGTTTCTGAGAGCTGAAAACGGCGATCTCTGCGTCGGGATTCGCC GGGCCAAGAGGGGTATCGGCGGCGGGGCAGAGGTGCCGTCCGGGTGGAGTTCCGGCGCCGGTGCCGGAAACTGCGGTCTT GGGCCTTATGGGGCTTTTTCTGTGTTCTTGAGAGAAGAAGGTAAGCTTTTGAGGAATGGTTGTGGCGGTGGCAACTCGAG TCCTGGCGGTGTTGGAAGGCCAAAAGTGAGTGGTGAATCTGTGAGGGAAGCTATGGCATTGGCTGGGAGCAATCAAGCTT TTGAGGTTGTTTACTATCCGAGAGCTAGTACTCCTGAGTTTTGCATCAAGACTTCAGCTGTGAAAGCTGCTATGAGGATT CAATGGTGTTCTGGGATGAGGTTTAAGATGCCATTTGAAACTGAGGATTCTTCAAGGATAAGCTGGTTTATGGGGACCAT AGCTTCTGTTCAGGTTGTTGATCCTATACGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTTACTTGGGACGAGCCAG ATTTGCTACACAATGTGAAGCGTGTAAGCCCGTGGCTGGTTGAGTTAGTCTCAAACATGTCAACCATCCACCATCTCACA CCCTTCTCTCCTCCGCGGAAGAAGCTCCGGTTTCCGCCACACCCGGACTTCCCGCTTGACATTCAATTTCCGTTACCGGC GTTTTCAGGCAACCCCCTCGGGCCTAGCAGCCCCTTGTGTTGTCTATCTGACAATGCTCCTGCAGGCATACAGGGAGCCA GGCATGCTCAAATTGGAATATCTCTCTCAGATATCCACCTCCACAACAAACTGCAGTTGGGGGTGCTTCCAACTAACATA ACCAACCATGATCATAAAAGCAAGGAAAGCTTATCATGCTTGCTCACCATGGGAAATTCTCAAAAAAGTTTGGAGAAATC TGATGATGATGTGAAGAGACACCAATTTTGGCTTTTTGGTAAACCGATACTCACTGAGCAACAAATTTCTAGAAGAAGAG CTTCTAGTGATGATGATAATGTGTTGTTGTCTCAGAATTGTAATTCACCAAAGAAAGAGAAGTGGTTTTTTGGTGACTCT CAAATCCAATCATCACCAGAAAAGTCTTCTACTACTTCTAGTGGTGAATTCTCTTGGCAACTTGGTTTGGACACTGGTCA TTGCAAGGTTTTCTTGGAGTCAGAAGATGTGGGAAGAACACTGGACCTGTCACGTGTTGGTTCTTATGAAGAGCTTTATA GGAGACTGGCCAACATGTTTGGAATGGAAAGGTCTGAGCTGTTGAGTCATGTGCTCTACCGTGACTCCACAGGTGCTGTT AAACATACTGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACCATTCTGACAGATTCTGCAGGCAG CAAAGATACTAGAAGGGTCTTGATTACAGGAACTAGGAATGCTGAACGTGGATTGGATGCGTCAAATAAGACAGGTCCTC TGAGTATATTTGCTTAA
Protein sequence (LotjaGi3g1v0163700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKEADRSSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQCSVDFAASLRIPPLILCRVAAVKFSADPETDEVFAKM RLVPLRNSELDHEDGGDGASDGNATEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVH GEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKRGIGGGAEVPSGWSSGAGAGNCGL GPYGAFSVFLREEGKLLRNGCGGGNSSPGGVGRPKVSGESVREAMALAGSNQAFEVVYYPRASTPEFCIKTSAVKAAMRI QWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMSTIHHLT PFSPPRKKLRFPPHPDFPLDIQFPLPAFSGNPLGPSSPLCCLSDNAPAGIQGARHAQIGISLSDIHLHNKLQLGVLPTNI TNHDHKSKESLSCLLTMGNSQKSLEKSDDDVKRHQFWLFGKPILTEQQISRRRASSDDDNVLLSQNCNSPKKEKWFFGDS QIQSSPEKSSTTSSGEFSWQLGLDTGHCKVFLESEDVGRTLDLSRVGSYEELYRRLANMFGMERSELLSHVLYRDSTGAV KHTGEEPFSDFMKTAKRLTILTDSAGSKDTRRVLITGTRNAERGLDASNKTGPLSIFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 682 | 682 | 0.0 | – | |
PANTHER | 1 | 682 | 682 | 0.0 | – | |
MobiDBLite | 88 | 112 | 25 | - | – | |
SUPERFAMILY | 109 | 217 | 109 | 1.1E-29 | ||
Gene3D | 112 | 216 | 105 | 2.0E-39 | ||
CDD | 113 | 214 | 102 | 7.01607E-23 | ||
ProSiteProfiles | 114 | 216 | 103 | 13.183 | ||
SMART | 114 | 216 | 103 | 2.2E-23 | ||
Pfam | 114 | 215 | 102 | 1.7E-22 | ||
Pfam | 285 | 367 | 83 | 3.6E-32 | ||
Gene3D | 321 | 396 | 76 | 2.1E-28 | – | |
ProSiteProfiles | 585 | 665 | 81 | 18.971 | ||
Gene3D | 585 | 668 | 84 | 8.8E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi3g1v0163700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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