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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0163700 |
| Transcript ID | LotjaGi3g1v0163700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT2G28350.1 auxin response factor 10; Swiss-Prot: sp|Q653H7|ARFR_ORYSJ Auxin response factor 18; TrEMBL-Plants: tr|G7IRU1|G7IRU1_MEDTR Auxin response factor; Found in the gene: LotjaGi3g1v0163700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22264358..22268794) extracted from Lotus japonicus Gifu genome v1.2.
AGAGAAAAAGTGGTTGTCCCTTTCTTTTCCCTTCTTTCCCTGAGATCTGAGAGAAACCATCCAAAAGATAAGAGCCAGAA ACAAAGAAAAATCACAACAAGAAATCTTTGCATGATGGAACTTGTTCAAGGTATGATTCAGAATCTCTTCTAGTAGCTAC TATCTGTTGAAATTGTATTGAAAATCTCAGTATGTTCATAATGTTTCAGGTAACACTTTGGTATTGATTGAGTAAACCAG AAGAAAACCAACTCAGAAAGATTGGAAAATTCAGCAGCAAGAAGAACCTTTCACATGTGATGCACCTTTGAAAACAGAAC GTGGGGTTGGAAGATTCACACCGTGGAACCGTGCAAGCCATCAATCTAACTCTCCCAAACACATTTTCACTCTCTAACAA AAGGTGAAAGCATTTTCTCTTGTTTCAACAAAACAGAGTAAAACAGAACAGAGTACTCTCTCTGTTTCACCTTCTGATTG TTCAGCTCATTTTGGATCTCTCTTGACTCCACAGGATTCACTGAGGGAAACCCATCAGGAAAACAATCAAACCTGCTTTG TGGCACTGTTTGATCACTCATTCAATGAAGGAAGCTGACAGAAGCAGCTTGGATCCACAGCTATGGCACGCATGCGCCGG CGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTGTTCTACTTCCCACAGGGGCACGCGGAACACGCACAGTGCAGCG TGGACTTCGCAGCTTCCCTAAGAATCCCACCGCTCATCCTCTGCCGCGTCGCCGCCGTGAAATTCTCCGCCGACCCAGAA ACCGATGAAGTGTTCGCCAAGATGAGGCTGGTTCCCCTGAGAAACTCAGAGCTTGATCACGAAGATGGCGGTGATGGTGC TTCTGATGGAAACGCCACCGAGGGTTCAGAGAAGCCAGCGTCGTTCGCCAAGACGTTAACACAGTCCGATGCTAACAACG GTGGCGGTTTCTCTGTTCCGCGGTACTGCGCGGAGACCATTTTCCCACGGCTGGATTACTCGGCTGAACCGCCGGTTCAG ACCGTCATCGCCAAGGACGTTCACGGCGAGGTTTGGAAGTTCCGGCACATATACAGAGGCACGCCGCGCCGGCACTTGCT GACAACCGGGTGGAGCAGTTTTGTCAACCAGAAGAAGCTCGTTGCAGGGGACTCTGTCGTGTTTCTGAGAGCTGAAAACG GCGATCTCTGCGTCGGGATTCGCCGGGCCAAGAGGGGTATCGGCGGCGGGGCAGAGGTGCCGTCCGGGTGGAGTTCCGGC GCCGGTGCCGGAAACTGCGGTCTTGGGCCTTATGGGGCTTTTTCTGTGTTCTTGAGAGAAGAAGGTAAGCTTTTGAGGAA TGGTTGTGGCGGTGGCAACTCGAGTCCTGGCGGTGTTGGAAGGCCAAAAGTGAGTGGTGAATCTGTGAGGGAAGCTATGG CATTGGCTGGGAGCAATCAAGCTTTTGAGGTTGTTTACTATCCGAGAGCTAGTACTCCTGAGTTTTGCATCAAGACTTCA GCTGTGAAAGCTGCTATGAGGATTCAATGGTGTTCTGGGATGAGGTTTAAGATGCCATTTGAAACTGAGGATTCTTCAAG GATAAGCTGGTTTATGGGGACCATAGCTTCTGTTCAGGTTGTTGATCCTATACGTTGGCCTAATTCCCCTTGGAGACTTC TTCAGGTACTCTTCTAGTCTCACTCTTTGTGGTTAGAATTTCACAAATTTAACACACTGGAATTTTGGTTTTAGAGAACA TGCATGTTTTGACGAATCTGGTTTCTAAACTGTTATATTAGTCCATATGAGCCAGAAGGAGCTCAATTCTTATGTCTCTT TGGGGCTGTGTTTGTGCTTTGTTAAGGTTCAGATTTTGTAAAGTTTTCTTGAGAATCTGGTTATGTTAGTGCGTGTTTGG ATCAACGTTTGTCACAATTGATTTTCAGTAAAATCGATTTCAGTAGAATTGATTATTAGTAAAAATGGGGTGAAAGTGAA GTGTTTTATGTTTCGAACTTTGGATATATTAATGAAAAAAGTGAGTTTTGTTGGATAATGTTGTGAAATTCAGTTGCAAA ATCTCACAATTGATTATGTTAGACGAGCTTATTCTAGAATGGGCATGAAATCAACTCTAGAAAATGACTCTCAAACATCA GTATTTTCATCCAAAATTTGTTTTGCTACAACGGAATTGATTATGTGGTTTCCCGACGAAAAACCAAACAAACTCTTAAT ATGTCGCTGTTCTTGATCTATGAACATTTTGGTTTCAGAGTTTGAACTGCCAATTTTCATTAGGGAATGTTTGGTTTTTT TACACTTGATTGTTTCGAAATCTTTCAACAGATGATTCATAATACACAATTAATGCCTAATGGTATTTAGAAGCTTCTGT GATGAGTAGCTTCTTGGTGCCAGTATTGATTCAGCAGAAATAGAAGCTGGTCCAAACATGCTTTTAATCTTTTAGAAAGA CTTTCATGCAACAACCTTGATTGATCTTGTTAATATCACTGCAGGTTACTTGGGACGAGCCAGATTTGCTACACAATGTG AAGCGTGTAAGCCCGTGGCTGGTTGAGTTAGTCTCAAACATGTCAACCATCCACCATCTCACACCCTTCTCTCCTCCGCG GAAGAAGCTCCGGTTTCCGCCACACCCGGACTTCCCGCTTGACATTCAATTTCCGTTACCGGCGTTTTCAGGCAACCCCC TCGGGCCTAGCAGCCCCTTGTGTTGTCTATCTGACAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGA ATATCTCTCTCAGATATCCACCTCCACAACAAACTGCAGTTGGGGGTGCTTCCAACTAACATAACCAACCATGATCATAA AAGCAAGGAAAGCTTATCATGCTTGCTCACCATGGGAAATTCTCAAAAAAGTTTGGAGAAATCTGATGATGATGTGAAGA GACACCAATTTTGGCTTTTTGGTAAACCGATACTCACTGAGCAACAAATTTCTAGAAGAAGAGCTTCTAGTGATGATGAT AATGTGTTGTTGTCTCAGAATTGTAATTCACCAAAGAAAGAGAAGTGGTTTTTTGGTGACTCTCAAATCCAATCATCACC AGAAAAGTCTTCTACTACTTCTAGTGGTGAATTCTCTTGGCAACTTGGTTTGGACACTGGTCATTGCAAGGTTTTCTTGG AGTCAGAAGATGTGGGAAGAACACTGGACCTGTCACGTGTTGGTTCTTATGAAGAGCTTTATAGGAGACTGGCCAACATG TTTGGAATGGAAAGGTCTGAGCTGTTGAGTCATGTGCTCTACCGTGACTCCACAGGTGCTGTTAAACATACTGGTGAAGA ACCCTTCAGGTACAATACAACCTTTTCTTTTTTCATGTTTTTAACTGGTGAATGTTTTGTTGGAGTTTTGTAATGCTTAA TGGGGGGTTTTAATTTTGTTTAATCATCACATTGCAGTGACTTCATGAAGACAGCAAAAAGATTGACCATTCTGACAGAT TCTGCAGGCAGCAAAGATACTAGAAGGTAAAATTTAAAAAATAACTCGAAATTGAAATATTCATATAGCATGCTGGATCT TTTTTTCCCTCATAATCAATGTTGAGGTAAACAGAAGCTACTTACCAAAGTTTCTCCCCATAATTGATTCTAGTTTAAAA TCAATTCTAGAATGAGTTCCATACATGCTATAGTAGGAATTGGATTCCCTGGCAGCAGGGAATTGCTACATTCACTCTGT CACGCAATCTGAGTTGTTCGGTAAAAGAACGTTTAGATTTTAAATTTATATCTACTGTCTGATCTTGAATTTTTTATGAA GTATATGAACCGACTAATCTTGATCATATGACTCAATTTGCTTGACTGAGCGAATGCATGGTATCCGGTGCAGGGAACCT GAATCACTAAGAGTATTTTTTACTTTTGCAAGTGTTCCTCTATGTGACTTTAAAATCTGTTTCGCAGGGTCTTGATTACA GGAACTAGGAATGCTGAACGTGGATTGGATGCGTCAAATAAGACAGGTCCTCTGAGTATATTTGCTTAATATGGTGTGGC ACATGAGACTTTGGTTTTTAGCTTTGATTTGTGAAGTTTGAAGGATGTAGTTACCACTCTTACTTACTAGAGGAGACTGA ATATGAAGTAAACTTTCACATTCTATAAAGAAGATTGCCATATTTTTGTTTATCTGAAGTTGAAGAAAACAATGATTATT CCTCTATTATGGACAATTGCTATTCAATATTAACCAAGATTTGGGTTCCCTTTTATGTAAGCTGCTAGGGATCTCCAGTG TAGTTTACACGATGCGGGGCTAAAACGTTTGTGCTACTGTGCGAAACCATTTGTTTGGATCTTATACATGCTGTGTATCA TTTGATTGTGGCTCATTGATTGAATTAGCATCAAAAT
CDS sequence (LotjaGi3g1v0163700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGAAGCTGACAGAAGCAGCTTGGATCCACAGCTATGGCACGCATGCGCCGGCGGCATGGTTCAGATGCCGCCGGT GAACTCCAAGGTGTTCTACTTCCCACAGGGGCACGCGGAACACGCACAGTGCAGCGTGGACTTCGCAGCTTCCCTAAGAA TCCCACCGCTCATCCTCTGCCGCGTCGCCGCCGTGAAATTCTCCGCCGACCCAGAAACCGATGAAGTGTTCGCCAAGATG AGGCTGGTTCCCCTGAGAAACTCAGAGCTTGATCACGAAGATGGCGGTGATGGTGCTTCTGATGGAAACGCCACCGAGGG TTCAGAGAAGCCAGCGTCGTTCGCCAAGACGTTAACACAGTCCGATGCTAACAACGGTGGCGGTTTCTCTGTTCCGCGGT ACTGCGCGGAGACCATTTTCCCACGGCTGGATTACTCGGCTGAACCGCCGGTTCAGACCGTCATCGCCAAGGACGTTCAC GGCGAGGTTTGGAAGTTCCGGCACATATACAGAGGCACGCCGCGCCGGCACTTGCTGACAACCGGGTGGAGCAGTTTTGT CAACCAGAAGAAGCTCGTTGCAGGGGACTCTGTCGTGTTTCTGAGAGCTGAAAACGGCGATCTCTGCGTCGGGATTCGCC GGGCCAAGAGGGGTATCGGCGGCGGGGCAGAGGTGCCGTCCGGGTGGAGTTCCGGCGCCGGTGCCGGAAACTGCGGTCTT GGGCCTTATGGGGCTTTTTCTGTGTTCTTGAGAGAAGAAGGTAAGCTTTTGAGGAATGGTTGTGGCGGTGGCAACTCGAG TCCTGGCGGTGTTGGAAGGCCAAAAGTGAGTGGTGAATCTGTGAGGGAAGCTATGGCATTGGCTGGGAGCAATCAAGCTT TTGAGGTTGTTTACTATCCGAGAGCTAGTACTCCTGAGTTTTGCATCAAGACTTCAGCTGTGAAAGCTGCTATGAGGATT CAATGGTGTTCTGGGATGAGGTTTAAGATGCCATTTGAAACTGAGGATTCTTCAAGGATAAGCTGGTTTATGGGGACCAT AGCTTCTGTTCAGGTTGTTGATCCTATACGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTTACTTGGGACGAGCCAG ATTTGCTACACAATGTGAAGCGTGTAAGCCCGTGGCTGGTTGAGTTAGTCTCAAACATGTCAACCATCCACCATCTCACA CCCTTCTCTCCTCCGCGGAAGAAGCTCCGGTTTCCGCCACACCCGGACTTCCCGCTTGACATTCAATTTCCGTTACCGGC GTTTTCAGGCAACCCCCTCGGGCCTAGCAGCCCCTTGTGTTGTCTATCTGACAATGCTCCTGCAGGCATACAGGGAGCCA GGCATGCTCAAATTGGAATATCTCTCTCAGATATCCACCTCCACAACAAACTGCAGTTGGGGGTGCTTCCAACTAACATA ACCAACCATGATCATAAAAGCAAGGAAAGCTTATCATGCTTGCTCACCATGGGAAATTCTCAAAAAAGTTTGGAGAAATC TGATGATGATGTGAAGAGACACCAATTTTGGCTTTTTGGTAAACCGATACTCACTGAGCAACAAATTTCTAGAAGAAGAG CTTCTAGTGATGATGATAATGTGTTGTTGTCTCAGAATTGTAATTCACCAAAGAAAGAGAAGTGGTTTTTTGGTGACTCT CAAATCCAATCATCACCAGAAAAGTCTTCTACTACTTCTAGTGGTGAATTCTCTTGGCAACTTGGTTTGGACACTGGTCA TTGCAAGGTTTTCTTGGAGTCAGAAGATGTGGGAAGAACACTGGACCTGTCACGTGTTGGTTCTTATGAAGAGCTTTATA GGAGACTGGCCAACATGTTTGGAATGGAAAGGTCTGAGCTGTTGAGTCATGTGCTCTACCGTGACTCCACAGGTGCTGTT AAACATACTGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACCATTCTGACAGATTCTGCAGGCAG CAAAGATACTAGAAGGGTCTTGATTACAGGAACTAGGAATGCTGAACGTGGATTGGATGCGTCAAATAAGACAGGTCCTC TGAGTATATTTGCTTAA
Protein sequence (LotjaGi3g1v0163700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKEADRSSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQCSVDFAASLRIPPLILCRVAAVKFSADPETDEVFAKM RLVPLRNSELDHEDGGDGASDGNATEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVH GEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKRGIGGGAEVPSGWSSGAGAGNCGL GPYGAFSVFLREEGKLLRNGCGGGNSSPGGVGRPKVSGESVREAMALAGSNQAFEVVYYPRASTPEFCIKTSAVKAAMRI QWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMSTIHHLT PFSPPRKKLRFPPHPDFPLDIQFPLPAFSGNPLGPSSPLCCLSDNAPAGIQGARHAQIGISLSDIHLHNKLQLGVLPTNI TNHDHKSKESLSCLLTMGNSQKSLEKSDDDVKRHQFWLFGKPILTEQQISRRRASSDDDNVLLSQNCNSPKKEKWFFGDS QIQSSPEKSSTTSSGEFSWQLGLDTGHCKVFLESEDVGRTLDLSRVGSYEELYRRLANMFGMERSELLSHVLYRDSTGAV KHTGEEPFSDFMKTAKRLTILTDSAGSKDTRRVLITGTRNAERGLDASNKTGPLSIFA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 682 | 682 | 0.0 | – | |
| PANTHER | 1 | 682 | 682 | 0.0 | – | |
| MobiDBLite | 88 | 112 | 25 | - | – | |
| SUPERFAMILY | 109 | 217 | 109 | 1.1E-29 | ||
| Gene3D | 112 | 216 | 105 | 2.0E-39 | ||
| CDD | 113 | 214 | 102 | 7.01607E-23 | ||
| ProSiteProfiles | 114 | 216 | 103 | 13.183 | ||
| SMART | 114 | 216 | 103 | 2.2E-23 | ||
| Pfam | 114 | 215 | 102 | 1.7E-22 | ||
| Pfam | 285 | 367 | 83 | 3.6E-32 | ||
| Gene3D | 321 | 396 | 76 | 2.1E-28 | – | |
| ProSiteProfiles | 585 | 665 | 81 | 18.971 | ||
| Gene3D | 585 | 668 | 84 | 8.8E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi3g1v0163700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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