Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0164300 |
| Transcript ID | LotjaGi3g1v0164300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nucleotide/sugar transporter family protein; TAIR: AT2G28315.1 Nucleotide/sugar transporter family protein; Swiss-Prot: sp|Q8RXL8|Y1689_ARATH Uncharacterized membrane protein At1g06890; TrEMBL-Plants: tr|K7LVI6|K7LVI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0164300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:22361754..22364435) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGAGATGTCGAGCTTCCAATTGGGTGTTATTGGTGCATTATTTCTCTCAGTGGCTTCTTCTGTCTCCATTGTCAT ATGCAACAAAGCCTTGATGAGCAATCTTGGCTTCCCTTTCGGTGATAATCATTTTCTCCCTTCTTGAAGCACTATTAGAT AATCACTTATCAAAATTCAAGTTTACTAAGTTTTTTTTTTCCAGCTACTACACTCACTAGTTGGCATTTGATGGTCACGT TTTGCACCCTTCATGTGGCTCAACGCTTAAATATGTTTGTGGCTAAATCCATTGACATGAAGACCGTCATGTTTTTTGGG TTTCTGAATGGAATCTCCATTGGATTTCTCAACTTGAGTCTTGGCTTCAATTCAGTTGGATTCTATCAGGTTAATTTATC TTTGTAACTTTCTATGATTTTACAACATGTTTGGACGTATAATGGACATAAAACTCACTCTAAAACACGTTAGCTAAAAA GCTACGTAATGTAGCTTATACATAAACGCGCTTTTGGGGTCTAAACATGACTTGCAAGCGCATAGCCAAACAGGCACATA ATCGAATTATTAAGTAAGTTTCACAAGACTAAAATAACATAATGTGAGAGCTCAGACTATCTCTGTTTTTTCAAATCACA TAGCAAAAAAGTTAACTAAAGAATATTTCATTTTAGTCCATGACAATGCTCTAGAAATTAAATAACCCTGTTGAAACTAA GAATTGATTGAAATGGTAAAACCATTCATTGTATTGATCATATCAGTATATATATATATATATATATATATATATATATA TATATATATGTATGTATGTATGTATGTATATTTACACACACATACACAAAATTGGTTCACAACTTACAACTGAATGGCCA ATGAGTTAGCTAGACTAGAAGATAACAAACAACCTAACTCAGAGAACTAGTTCTGAACAGAACTAACAAACTAACTTAAA GTTAAGTACAATTATTCTAACTAACATGCTACTTAATTATAACTTAATTAATAGTGTGTAAAACAAATGTAATTCATTTT GAAACTTCAGGACACACATAAGTGTATATATTGACTTTTACCTTATGAAATGATTATCTTGCAGATGACAAAACTTGCGA TCATACCATTCACCGTACTGTTAGAAACTATTTTTCTAAAGAAGCAGTTCAGGTAAAAAAAAAAGTCAATGAACAGACTC GGTACTAGTTATAGTAAATTAAACACTATGGTCACTTGTTTACTTACTATGAACATTATGCTATTGCAGCCAGAAAATAA AATTCTCCTTACTCTATTTACTTGTTGGAGTTGGCATTGCCTCTATCACAGATCTTCAGCTCAATTTTGTGGGAACAGTT CTTTCCCTTCTAGCAATCATAACTACATGTGTTGGCCAAATTGTATCCTTTACTTGCTCACTCTTCCAGTTTTATGGCAT GTAATTATTGTCAATAAGAGTAGTTCTACAATTAACAGTCTTTCCGACCAATCAAAATCTTCTGTTCTCAAATTGTCCCT CATTTCTCTATCCTGCATATGAAATTTGGTCATGATAATTAGAAAGTGACATGTTAAAATCTCACTAGTGTGACATGAAA TGAGACAGAAGATTTTGATCCATTTCTGATACACATGTTATTATTATTGGGTGAAATTCACTCTTTACTTATTAATTGTG ATTTGTAGCTTAGACTCATTTTACTTGCTGAGGGAAGATTGAATAATTGGATTCTTAACTTTGTTTAGCTGACTAACACT ATACAGAAGAAGCTTAACGTCTCTTCTACGCAGCTGCTCTACCATTCCGCCCCATTCCAAGCAGCAATTCTTTTTGTTTC AGGCCCTCTAGTGGATCAAATGCTCACCAAGCAAAGTGTCTTTGCCTACAAATATTCTCCTATAGTCTTGGTATAACATC TACTCTTCAAATCGAAATCTTATGTCCCCTTTTGGAGTCTCATTCCCTGTCTCACAAATAGAATTGTGTCATGTCATTTA AAAACCACTCATCTAAGGTTATAATTGTCCTATCAATTGACATGACATAATTCTATTGGTGGGACAAGGAACATGACACC GGACTGGGATAGAGGATTTCGTTCCCTACCACTTAATTATCATTCACCAAACTTAGAAATTTCTGAAGTGATTCTTTTTT AAAATAAAATTCAGGCATTTATTGTCATGTCCTGCTTGATTGCTGTTTCGGTGAACTTCAGCACGTTTCTAGTGATAGGA AAAACATCACCTGTAACATATCAAGTGCTGGGCCACCTCAAGACTTGTCTTGTTCTTGGATTTGGCTACACATTACTCCA TGACCCCTTCACTGGAAGGAACATTCTTGGAATACTAGTTGCCGTTTTTGGAATGGGCTTGTACTCTTATTTCTGCACTC AGGAGAACAAAAAGAAACAGTCAGGTGATCTTCCATTGGCCTCCCAGGTATGAACTTATCTTCTTCACCCTTCTCCTTTT GTTTCTTAATTTTTTTTCTGTTTCTACTAATCTGCTTGTTCTAGTGTCTACTAAGAAGTTTATATGAATTTAGTTAATGG TTTTTAAATCTTTACAGGTTAAAGACAAAGATAGCTCACCCCTTTTGGCAGGGAAAAACATGGGTAATCAAGAAGGGGAA AATCATGAGCCTAAGAAATTAAGCAAGGAATCTGTTATTTAA
CDS sequence (LotjaGi3g1v0164300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAGATGTCGAGCTTCCAATTGGGTGTTATTGGTGCATTATTTCTCTCAGTGGCTTCTTCTGTCTCCATTGTCAT ATGCAACAAAGCCTTGATGAGCAATCTTGGCTTCCCTTTCGCTACTACACTCACTAGTTGGCATTTGATGGTCACGTTTT GCACCCTTCATGTGGCTCAACGCTTAAATATGTTTGTGGCTAAATCCATTGACATGAAGACCGTCATGTTTTTTGGGTTT CTGAATGGAATCTCCATTGGATTTCTCAACTTGAGTCTTGGCTTCAATTCAGTTGGATTCTATCAGATGACAAAACTTGC GATCATACCATTCACCGTACTGTTAGAAACTATTTTTCTAAAGAAGCAGTTCAGCCAGAAAATAAAATTCTCCTTACTCT ATTTACTTGTTGGAGTTGGCATTGCCTCTATCACAGATCTTCAGCTCAATTTTGTGGGAACAGTTCTTTCCCTTCTAGCA ATCATAACTACATGTGTTGGCCAAATTAAGAAGCTTAACGTCTCTTCTACGCAGCTGCTCTACCATTCCGCCCCATTCCA AGCAGCAATTCTTTTTGTTTCAGGCCCTCTAGTGGATCAAATGCTCACCAAGCAAAGTGTCTTTGCCTACAAATATTCTC CTATAGTCTTGGCATTTATTGTCATGTCCTGCTTGATTGCTGTTTCGGTGAACTTCAGCACGTTTCTAGTGATAGGAAAA ACATCACCTGTAACATATCAAGTGCTGGGCCACCTCAAGACTTGTCTTGTTCTTGGATTTGGCTACACATTACTCCATGA CCCCTTCACTGGAAGGAACATTCTTGGAATACTAGTTGCCGTTTTTGGAATGGGCTTGTACTCTTATTTCTGCACTCAGG AGAACAAAAAGAAACAGTCAGGTGATCTTCCATTGGCCTCCCAGGTTAAAGACAAAGATAGCTCACCCCTTTTGGCAGGG AAAAACATGGGTAATCAAGAAGGGGAAAATCATGAGCCTAAGAAATTAAGCAAGGAATCTGTTATTTAA
Protein sequence (LotjaGi3g1v0164300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEMSSFQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLMVTFCTLHVAQRLNMFVAKSIDMKTVMFFGF LNGISIGFLNLSLGFNSVGFYQMTKLAIIPFTVLLETIFLKKQFSQKIKFSLLYLLVGVGIASITDLQLNFVGTVLSLLA IITTCVGQIKKLNVSSTQLLYHSAPFQAAILFVSGPLVDQMLTKQSVFAYKYSPIVLAFIVMSCLIAVSVNFSTFLVIGK TSPVTYQVLGHLKTCLVLGFGYTLLHDPFTGRNILGILVAVFGMGLYSYFCTQENKKKQSGDLPLASQVKDKDSSPLLAG KNMGNQEGENHEPKKLSKESVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 322 | 322 | 8.9E-189 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 322 | 322 | 8.9E-189 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Pfam | 21 | 288 | 268 | 2.9E-18 | ||
| Phobius | 23 | 37 | 15 | - | – | |
| TMHMM | 37 | 59 | 23 | - | – | |
| Phobius | 38 | 59 | 22 | - | – | |
| Phobius | 60 | 74 | 15 | - | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 75 | 93 | 19 | - | – | |
| Phobius | 94 | 98 | 5 | - | – | |
| Phobius | 99 | 120 | 22 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| TMHMM | 128 | 145 | 18 | - | – | |
| Phobius | 132 | 164 | 33 | - | – | |
| TMHMM | 149 | 166 | 18 | - | – | |
| Phobius | 165 | 183 | 19 | - | – | |
| TMHMM | 179 | 198 | 20 | - | – | |
| Phobius | 184 | 203 | 20 | - | – | |
| Phobius | 204 | 214 | 11 | - | – | |
| TMHMM | 213 | 235 | 23 | - | – | |
| Phobius | 215 | 238 | 24 | - | – | |
| Phobius | 239 | 243 | 5 | - | – | |
| Phobius | 244 | 265 | 22 | - | – | |
| TMHMM | 248 | 265 | 18 | - | – | |
| Phobius | 266 | 271 | 6 | - | – | |
| TMHMM | 269 | 291 | 23 | - | – | |
| Phobius | 272 | 290 | 19 | - | – | |
| Phobius | 291 | 342 | 52 | - | – | |
| MobiDBLite | 298 | 342 | 45 | - | – | |
| MobiDBLite | 327 | 342 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0164300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…