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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0172000 |
| Transcript ID | LotjaGi3g1v0172000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT3G44820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9FYC8|Y3482_ARATH BTB/POZ domain-containing protein At3g44820; TrEMBL-Plants: tr|I1MS75|I1MS75_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0172000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23676771..23678866) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAGAAAGTGTTTTGAGAGAGCGGAGAAAATTTACCTGGGAGCTGGTGTTTCCCACATTTCAATTTTGACTTCATGC GTAAATGCGCAGTTAAATAACAGACATTTCTGTAGTACAAAATTTGATTTTATGTCAGTGGTACTGTTATGCTTTTGTTA TGAAAAATTATTAGTTATACTGTATTTGAGTTTGAGTAAGATTTTCCATGGAACTGCAGTTCCCTCTTGTATCAAAATGT GGAAAAATTGCTCGGGCACATGAAAAGTCCAAGAATACCCATGAGGAGACACTCGCAATGGTGCTGGAAGAATTTCCTGG TGGTTCGGACACTTTCTTATTTGTGGCCAAATTCTGTTATGGGTTTCGTGTGGAACTGACTGCGAAAAATGCAGTTCTGG TCCATTGCGCTGCAGAGTACCTGGAAATGACAGATGAATTTGGAGAAGATAACTTGTTGTCGAAATCAGAGAGCTTTTTC CATAAAAATATACTGCGCAACTGGAAAGATTGCATTTTGGCTCTCCAAAGTTCCGAGCCTGTTCTACCAAGAGCTGAAAG TCTTCATTTAGTGGGCAAGTGTTTAAATGCTCTATCTATGATGGCTTGTACTGACCCAAGTTTGTTTGGATGGCCCATGA TGATGTACGGGAGTTTTCAGAGCCCTGGTGGAAGCATTCTTTGGAATGGTATAAACACCGGTGCTAGAATTCGGAGCGCA GAATCTGATTGGTGGTTCGAAGACATCTCATATCTCAGTGTGAGTTTGTTTGAGAGGCTTATTAAGACGATGCAAGCGAG AGGTATAAGACCTGAAAACCTGGCAGGTGCCATCATGTACTATTCTAGAAAGCACTTGCCCGGTCTGAGTCGGTGGCAGG GTGGCCAAGGCGGCAAAACCCGGACAGTTGTGAGTTTCAGCTTGACGCCTGCTACTACTGTTGATCAGAGGGTTCTGTTG GAAAGCATTGAAAAGCTTCTTCCTGAAAAGAAGGGAAGATCCTTTTGTTGCTTCCTACTTGGACTTCTAAGAGTGGCTTT GATATTGAATGTCAGTCAAACTTGCAAGGATTCTTTAGAGAGGAGGATAGGGATGCAATTGGAACTGGCAACTTTAGATA GTCTTCTGATTCCTACGTATTCAGATTCTGATGCATTATATAACACAGACTGTATTGAACATATAGTCCAGCATTTTATA CGTGCAGAATCAAATTTAACTGCCTTTTCTCCTTCATCACTTGACCAGCATGCGTCGTCTCCTTCATCTGAATCATCCAA AAAAGTGGCAAAGTTGATAGATAGCTACATTGCAGAAATTGCTTCTGATGTTAATTTAAAACCAGGAAAGATACGCGCTC TTGCAGAGGGACTCCCCGAGTCATCAAGATTATTGCACGACGGACTTTACAGGGCACTGGACATATATTTCAAGGTTTGA TTTTCCTGAGCTACATTTTTACTCAATGGTTTATTGCGATCACGGATGGTTACTTTGATGACTAATTATGTTGTGATATT GTTCAGGCCCATCCTTGGCTCTCTGATAAAGAGAAGGAAGAACTATGCAACATCATTGACTACAGAAAACTCTCAATCCA TGCTTGTGCCCATGCGTCGCAAAACGACAGGTTGCCCCTCAGGGTTGTTCTTCAGGTGCTGTTCTTTGAACAGCTGAATT TGAGAACAGCATTAACTGGATGTCTCAATGCATTGGATGGTGAAATTGCTCCAGCAGCTCCTGTTCGTGCAACTGCCTTA GGTGACACGGCAGGCGAAATTGTACAGAGGGACGGATGGGTGACCGTTTCGCGCGAAAACCAGGTTTTAAAGGTGGACAT GGATCGGATGAGCTCTAGAGTTGGAGAACTTGAAGAAGAATTCAGCAAAATAAAGCTAGAAATGAAAACTGTGGCCAAAT CCCACAGTTCTCAGGGTTCTCCTCGATTTTTTGGGAGGAAATTTGGGTGTAAGCTTGTTCCTAGATCTTCAGATGCTCAA CCAGAATCCCTTGACCGCTCCGTGTCCACACCAAGAGCATCAGTTGAACAAGCACGTCGATCCCATAATTCGAAACACAG GGGAAGTTTTTCTTGA
CDS sequence (LotjaGi3g1v0172000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCTGGAAGAATTTCCTGGTGGTTCGGACACTTTCTTATTTGTGGCCAAATTCTGTTATGGGTTTCGTGTGGAACT GACTGCGAAAAATGCAGTTCTGGTCCATTGCGCTGCAGAGTACCTGGAAATGACAGATGAATTTGGAGAAGATAACTTGT TGTCGAAATCAGAGAGCTTTTTCCATAAAAATATACTGCGCAACTGGAAAGATTGCATTTTGGCTCTCCAAAGTTCCGAG CCTGTTCTACCAAGAGCTGAAAGTCTTCATTTAGTGGGCAAGTGTTTAAATGCTCTATCTATGATGGCTTGTACTGACCC AAGTTTGTTTGGATGGCCCATGATGATGTACGGGAGTTTTCAGAGCCCTGGTGGAAGCATTCTTTGGAATGGTATAAACA CCGGTGCTAGAATTCGGAGCGCAGAATCTGATTGGTGGTTCGAAGACATCTCATATCTCAGTGTGAGTTTGTTTGAGAGG CTTATTAAGACGATGCAAGCGAGAGGTATAAGACCTGAAAACCTGGCAGGTGCCATCATGTACTATTCTAGAAAGCACTT GCCCGGTCTGAGTCGGTGGCAGGGTGGCCAAGGCGGCAAAACCCGGACAGTTGTGAGTTTCAGCTTGACGCCTGCTACTA CTGTTGATCAGAGGGTTCTGTTGGAAAGCATTGAAAAGCTTCTTCCTGAAAAGAAGGGAAGATCCTTTTGTTGCTTCCTA CTTGGACTTCTAAGAGTGGCTTTGATATTGAATGTCAGTCAAACTTGCAAGGATTCTTTAGAGAGGAGGATAGGGATGCA ATTGGAACTGGCAACTTTAGATAGTCTTCTGATTCCTACGTATTCAGATTCTGATGCATTATATAACACAGACTGTATTG AACATATAGTCCAGCATTTTATACGTGCAGAATCAAATTTAACTGCCTTTTCTCCTTCATCACTTGACCAGCATGCGTCG TCTCCTTCATCTGAATCATCCAAAAAAGTGGCAAAGTTGATAGATAGCTACATTGCAGAAATTGCTTCTGATGTTAATTT AAAACCAGGAAAGATACGCGCTCTTGCAGAGGGACTCCCCGAGTCATCAAGATTATTGCACGACGGACTTTACAGGGCAC TGGACATATATTTCAAGGCCCATCCTTGGCTCTCTGATAAAGAGAAGGAAGAACTATGCAACATCATTGACTACAGAAAA CTCTCAATCCATGCTTGTGCCCATGCGTCGCAAAACGACAGGTTGCCCCTCAGGGTTGTTCTTCAGGTGCTGTTCTTTGA ACAGCTGAATTTGAGAACAGCATTAACTGGATGTCTCAATGCATTGGATGGTGAAATTGCTCCAGCAGCTCCTGTTCGTG CAACTGCCTTAGGTGACACGGCAGGCGAAATTGTACAGAGGGACGGATGGGTGACCGTTTCGCGCGAAAACCAGGTTTTA AAGGTGGACATGGATCGGATGAGCTCTAGAGTTGGAGAACTTGAAGAAGAATTCAGCAAAATAAAGCTAGAAATGAAAAC TGTGGCCAAATCCCACAGTTCTCAGGGTTCTCCTCGATTTTTTGGGAGGAAATTTGGGTGTAAGCTTGTTCCTAGATCTT CAGATGCTCAACCAGAATCCCTTGACCGCTCCGTGTCCACACCAAGAGCATCAGTTGAACAAGCACGTCGATCCCATAAT TCGAAACACAGGGGAAGTTTTTCTTGA
Protein sequence (LotjaGi3g1v0172000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLEEFPGGSDTFLFVAKFCYGFRVELTAKNAVLVHCAAEYLEMTDEFGEDNLLSKSESFFHKNILRNWKDCILALQSSE PVLPRAESLHLVGKCLNALSMMACTDPSLFGWPMMMYGSFQSPGGSILWNGINTGARIRSAESDWWFEDISYLSVSLFER LIKTMQARGIRPENLAGAIMYYSRKHLPGLSRWQGGQGGKTRTVVSFSLTPATTVDQRVLLESIEKLLPEKKGRSFCCFL LGLLRVALILNVSQTCKDSLERRIGMQLELATLDSLLIPTYSDSDALYNTDCIEHIVQHFIRAESNLTAFSPSSLDQHAS SPSSESSKKVAKLIDSYIAEIASDVNLKPGKIRALAEGLPESSRLLHDGLYRALDIYFKAHPWLSDKEKEELCNIIDYRK LSIHACAHASQNDRLPLRVVLQVLFFEQLNLRTALTGCLNALDGEIAPAAPVRATALGDTAGEIVQRDGWVTVSRENQVL KVDMDRMSSRVGELEEEFSKIKLEMKTVAKSHSSQGSPRFFGRKFGCKLVPRSSDAQPESLDRSVSTPRASVEQARRSHN SKHRGSFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 566 | 566 | 2.4E-296 | ||
| PANTHER | 1 | 566 | 566 | 2.4E-296 | – | |
| Phobius | 1 | 235 | 235 | - | – | |
| CDD | 3 | 56 | 54 | 1.42476E-17 | – | |
| ProSiteProfiles | 144 | 430 | 287 | 88.27 | ||
| Pfam | 144 | 406 | 263 | 9.3E-87 | ||
| Phobius | 236 | 253 | 18 | - | – | |
| Phobius | 254 | 568 | 315 | - | – | |
| Coils | 477 | 504 | 28 | - | – | |
| MobiDBLite | 531 | 568 | 38 | - | – | |
| MobiDBLite | 537 | 554 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0172000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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