Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0172700 |
| Transcript ID | LotjaGi3g1v0172700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase, putative; TAIR: AT5G03740.1 histone deacetylase 2C; Swiss-Prot: sp|Q8LJS2|HDT1_SOYBN Histone deacetylase HDT1; TrEMBL-Plants: tr|C6TGQ0|C6TGQ0_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0172700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:23877166..23880098) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAGGAAAGTAAAAGAGGGAAGAAGAAGAGGAGGGAGAGAGCACACAGAAACCCTATTTTTTTCCATTCACTATATAT ATTCGCATAAACCCTACAAACCCTTCTCTCTCGCACCACTCGCTCAAACCTCGCACCCTCTTCCAAAACCAAAAACCCTA ACGTGCTCATTTCTCTCTCTTCCTCCAATGGAGTTTTGGGGTAAACCATCTCTATTCTACTCTCTTTTCCTTCTCTACGA TTCTTCTTCTGTAATAACCATGTCATTTTCTCCACTGAATGATAGTTCCTACCATTTTTTTTTTGAATTTTTGAATATTT TTTTGTGTAGCAACCTTCGTTTTGATCTCTGAGCCATTTTATTTGCTGTGCTGATTGCTGATTGCTGATTACTGACCTTG ATTTTAGGATTTGTTTCTCAAATGTTTTTGATCTGTGAAATGCAATTAGAGACAAATTTTATGTGCTAGGGTTTACTTTG CTGTAATCTGATTCGTTTGGTTGGTGATATAGGTGCTGAGGTTAAGGTTGGGGAAACTGTTAAGGTCGACCCAAGCGAGT TTGAGGCATGCATTCACCTTTCCCAGGTTAGGGTTTTCTCTGATTGTTGTTATGTTGTGTTGTTTGTTTTTTTATCGGTG TTGGTCTGAAATCTCTGTCCTGTTGTTGTTTGCTGTGTAGGCTGCTCTTGGTGAGTCAAAGAAGGACAAAGAACCTGTGG TCCTTTCCCTGAAAGTTGGTGACCAGAAATTTGTTCTGGGAACCCTTAACAGGGAGAAGATTCCTCAAGTGTCTCTTGAA TTAGTTCTTGACAGGGAGTTTGAGCTTTCTCACAACTCTAAAACTGCTAGTGTTCATTTCTGTGGATACAAAGCATACTA CCCTGCTGATGAATATCCTTGACACAGTAATTTATATTTGAATTGTTTAATATCTGAGTATATTTCAATTGTCTTTAGAG CTCTGTTATATAAGAATATATATGATGACTTCATCTTTCATTTTTTTCCTTAACCTTCGATGTGTCTTTCTGTCTGCACA AGCGAGGATGATTTTTCTGGTGAGGCTTGAAATTTCTATTAAACTTGTTATTACCTTTTGGACTGAGTTGGTTATTTAAT CATTGATTTATTTTTCTTGACTTGTACAGATAGTGATGAGAGTGATGAGGATATCCCATTGAACGCTGAGAATGGTAGAT ACGTCCTCTTAATCTGTAATTTGTTCCTGGCATTGCATGTTACTCAGTTACTATGTATCTAACTAATTGGCAAAATCATT TTAGGGAAGCCTGTGATAAAAGCTGAGGAGTTAAAGGTAACTGGGTCTAAAAAGGCTGATGCCAAGAGTGGTGCCTCAGC AAAACAAGTCAAGGTTATTGACCCCAAGAAAGATGAAGAGGATGATTCTGATGATGAAGATGATGAAGATGATGATTCTG ATGAGGAGGTATTGATTTATGTTAGGTTTATCTTGCCTTTTGATATAAACTCATTCTTTTGTTTGTCAGAAATAATGTCC TTCGATCTGATACATGCAAATTGTCTGAAATGAATTAGTTTGTTTATGTTTTTATATTGTTTTTTTTATATTAAGTCAAG GTCTTCTCAATGTATAAAAAATTTCATCTGGTTTTCAACCAGATGAATGGCTGGATTGTTTATTTTAACCTTTTATTGCT GATGATTGTAGATGGATGATGCTGATAGTGACAGTGATGAGAGCGACAGTGATGATACTGATGAAGAGACCCCTGTTAAG AAGGTAATACGTAGCAACATATTGGTATTGTAATTGTTTTTGGTTTCTTATGCTTATGGATGTGTGATGGATTTCGCTTG CTTTCTATTGTTGTTGGTTTTGAAGGCTGATCAGGGAAAGAAGAGAGCTAATGACTCTGCATTAAAAACCCCAGTTTCTA CCAAGAAGGCAAAAAACATCACGCCTGAAAAGACTGGTGAGACTAATAATCTTTGCTGCTTTAGATTTTATCACTATATT TTATGTTGTCTTTTTTGTTGAATATACCAAATTATATATTTTTATGGATGCCTGGTTTTGTGCTAAATCTATTTGGGTGC ATGCTCACGTCAGTGCATCAGTGTTTGGTTAATGTATGTTTACGTTGCAGTGTTTTTGACTTTGTTTGATGAATGCATGT TTACTTTGCATTAGTCTTTGAACACTACATGTAGTGTACAAGCTTCTTATGTTATCCCTTTAAATTGAATTGTAGATGGT AAGAAAACAGGACATACTGCCACTCCTCACCCTGGGAAGAAAGGTGGAAAGAATTCTGAGTCTAAGGCTCAGACTCCCAA GTCGGGTGGACAGTTCTCTTGCTCTCCCTGTAGCAAGTATGATTTTTAATAATACCCGAACTTAGTTTTGTTCAATTGAT ATTATGATTGACTTTTTTTGGTTGTTTTGACCAGGTCTTTCAATTCTGAGAGTGGTTTCCAACAACATAAAAAGGCTAAG CATGGTGGTCAGTGATGCTACATCTGTCAGTTCAAACTTCATCATGTATCATTTTTCATTACTGCGCATTACAGTGAGTA TCCTAAAGGCACTAGGTGTTTGTCCTTACTTTTTGGTGTAGTAAACTGGCGAAAAGTCTCAAGTTTTGTTTGACATTGTA TTGAGATGTTCTACTGCTTGTTTATTTGAACGGTTTGATTTTTATTTATACCATTGAGGGTTGTAGGCAGCATTGAGGGT TCTTATTTTGCATGCGATATTCCTTGTGATATTTACAATTTAGATGTTTTTAGGATTTTGCTAATACGCACATGCAAAAT CAGGCTTTGTTGCCTTTACCTTGCGGTTTTAACTAAGACTGAACTAAGTGCAGTAATCTTGTACGTGGTTATTGATGTGA ACAGTGACACAAATTTATGTTTGTTAATTATTGTGCACAGAAATGTGTTGGGG
CDS sequence (LotjaGi3g1v0172700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAAACTGTTAAGGTCGACCCAAGCGAGTTTGAGGCATGCATTCACCT TTCCCAGGCTGCTCTTGGTGAGTCAAAGAAGGACAAAGAACCTGTGGTCCTTTCCCTGAAAGTTGGTGACCAGAAATTTG TTCTGGGAACCCTTAACAGGGAGAAGATTCCTCAAGTGTCTCTTGAATTAGTTCTTGACAGGGAGTTTGAGCTTTCTCAC AACTCTAAAACTGCTAGTGTTCATTTCTGTGGATACAAAGCATACTACCCTGCTGATGAAAGCGAGGATGATTTTTCTGA TAGTGATGAGAGTGATGAGGATATCCCATTGAACGCTGAGAATGGGAAGCCTGTGATAAAAGCTGAGGAGTTAAAGGTAA CTGGGTCTAAAAAGGCTGATGCCAAGAGTGGTGCCTCAGCAAAACAAGTCAAGGTTATTGACCCCAAGAAAGATGAAGAG GATGATTCTGATGATGAAGATGATGAAGATGATGATTCTGATGAGGAGATGGATGATGCTGATAGTGACAGTGATGAGAG CGACAGTGATGATACTGATGAAGAGACCCCTGTTAAGAAGGCTGATCAGGGAAAGAAGAGAGCTAATGACTCTGCATTAA AAACCCCAGTTTCTACCAAGAAGGCAAAAAACATCACGCCTGAAAAGACTGATGGTAAGAAAACAGGACATACTGCCACT CCTCACCCTGGGAAGAAAGGTGGAAAGAATTCTGAGTCTAAGGCTCAGACTCCCAAGTCGGGTGGACAGTTCTCTTGCTC TCCCTGTAGCAAGTCTTTCAATTCTGAGAGTGGTTTCCAACAACATAAAAAGGCTAAGCATGGTGGTCAGTGA
Protein sequence (LotjaGi3g1v0172700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFWGAEVKVGETVKVDPSEFEACIHLSQAALGESKKDKEPVVLSLKVGDQKFVLGTLNREKIPQVSLELVLDREFELSH NSKTASVHFCGYKAYYPADESEDDFSDSDESDEDIPLNAENGKPVIKAEELKVTGSKKADAKSGASAKQVKVIDPKKDEE DDSDDEDDEDDDSDEEMDDADSDSDESDSDDTDEETPVKKADQGKKRANDSALKTPVSTKKAKNITPEKTDGKKTGHTAT PHPGKKGGKNSESKAQTPKSGGQFSCSPCSKSFNSESGFQQHKKAKHGGQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 288 | 288 | 6.4E-134 | – | |
| Gene3D | 1 | 98 | 98 | 2.4E-7 | – | |
| PANTHER | 1 | 288 | 288 | 6.4E-134 | – | |
| Pfam | 3 | 92 | 90 | 1.2E-15 | ||
| MobiDBLite | 101 | 290 | 190 | - | – | |
| MobiDBLite | 101 | 115 | 15 | - | – | |
| MobiDBLite | 159 | 192 | 34 | - | – | |
| MobiDBLite | 193 | 209 | 17 | - | – | |
| MobiDBLite | 224 | 238 | 15 | - | – | |
| MobiDBLite | 250 | 279 | 30 | - | – | |
| SUPERFAMILY | 258 | 286 | 29 | 1.39E-5 | ||
| ProSiteProfiles | 264 | 290 | 27 | 12.321 | ||
| ProSitePatterns | 266 | 287 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0172700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…