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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0175800 |
| Transcript ID | LotjaGi3g1v0175800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger A20 and AN1 domain stress-associated protein; TAIR: AT2G27580.1 A20/AN1-like zinc finger family protein; Swiss-Prot: sp|Q9ZNU9|SAP3_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 3; TrEMBL-Plants: tr|V7BZK7|V7BZK7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0175800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24437515..24439950) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTCCCAAAATAATTAAGAGTACTTATTTAAAAAATAATTCTTTTGAGAAAAGGAGGTAGCGTAGCTTAGACGGTTT CCAGAAGAAACGAAATCATGGCCCCATACAACTCCCCTCAAGAGAAAGAGAGAGAAACACAGTCCATAGAAAACTCCACC GCGAAATAATAGACACGGTTGCACCCCGTTTGGTACAAAAACCAAACAAACCCCACGGGAAAGAAAACCGAAAAGAAAGA AATTCAAGAGAGAGAAAATTAAAAAAAACTATCTAGAATTTTCTTTTCTTTACCCAGACGAACGAATCGCCCTCTGTTTA GGTTTTTATTTTCTCTCCACTTTCCTTCAAATCTCCGTTATTTTCAGATTCTCTCCTCTTCTTTGTTAACCCCCAATCAA ACCCTCTCTCTCTCTCTTCAATTTTCCTTCGATTTTCCATCTCTCTCGTTTCGAATTCCCTCTAATCCATTCAATTTCAC CGTCGATTTGCAGATTCTCATACCGGTAATCTTCGATTCTTCCTTTGTTTTTTGGATTTGTAGCGATTTTTAGGGATTTT GATTTTGATTTTGATTTTGATTTTGAATCTAATCGATTGATCGGTTGTTTGGATCTGATTTGCAGATTGTGAGAAACATG GCGGAAGAACACAGGTGCCAGGCTCCGTTATTCTGCGCGAACAATTGCGGTTTCTTCGGGAGCGCGGCGACGGAGAATCT CTGTTCCAGGTGCTACCGCGATCTGCAGCTCAAGGAGCAACAGGCTTCATCAGCGAAGCAGGTTCTCAACCAGTCGCTCG CGCTTCCGGCTCCGGTGGTGATTTCCGAGCCGGCGGCGGCTTCTTCTTCGTCGGTTGTTGCGTCGCCACGCGCCGTGGAG GAGGTGAAGCCGAATGGGCCGAGCCGGTGCGTGACGTGCAGGAAGCGCGTGGGGCTCACGGGGTTCAAGTGCCGGTGCGG GATGACGCTGTGTGGGGTCCACCGTTACCCGGAGCAGCATGATTGTGAGTTCGATTTCAAGGGTTTGGGGAGGGACCAGA TCGCGAAGGCGAATCCGGTAGTGAAGGCGGAGAAGCTTGAGAAGATCTGAGATGGGGAGGGGCGTTATGGTCATTTCGTA TTTTGTCGTTGTTACCGATTTGTCCGTGGAAACTGACCCGGGTATGGATCCGGGTCGGACTCACGGTGGTGTTAACGGAT CGGCGCCGTAATAGGCGGTGGTGGGGGTGGTTGGGTTAGTGGGTGGGTCATTGTTGCGTTGTGATTGTAAATTAAATTTA ATAACATTTTAATTGTCTTTACAGTTGAATGTTGAATTATTTTCTAGCTTTAAAATATTAATTCTCTTGCAGGCTGAAAA TTATTTCAAAATGAAGGGTCACTCCGCGTGACGCTGATATTCGCTCATGGATTAATAGGATTATTACTTGTGTGTGTATC TCAACAATAGCTTGCTTGCCATTTACCTTCCTCATGGGTTAAAAGTTTGAATTATTGATCCAAATTGATTATTGATTATT TAAACTAAAATTGATTTAATTAGTTTTTCTTAATTTAGTTCATTTGTTTGTGAGTCATATTAGGGGGCGAGGGTGGTGTC TTGTGCTCTCCTTTAGTGACAGTGCTTATAGCTTAGAGAAAAAAGACTCAAAAAAGTGGATCGCGAGGGGAAACTTATTC AAGCCCCTATGAAGGTTTGTTGCGACTTTGAGTAGTGCTATTTGAGGATGGTTTATGGTCGAGCATAATGGGTTGGTGCT TTTGGAACCCTAGGGTGTGTCAACGAGGGCGAGACATGCTTTGCTCACGGGGAAACGCTAGGGTTTGGAAACGCCAGGGT TTGGTTTAAGATTTGCTTGGACACTGCCCTCCAAGACCTTATAGCCCAGATTAGTTATTCAGGTTGAGTTAGATTTGGGA GGTAAGGTTGAGTTAGATTTGGGAGGTATAATTTTTTCCTTGGCTTGTTTATTGTTTTTTGTTATTTTCTTGTCTTTCTG CTTTTGGCTAGCTTGGGTGGTTTAGTGTTTTCGGTTAAAGTTCTAGGTTGTTTCTCTTATGTTTTTTGTGGCTTCTTTCT GAATATTTGGTTGTGTTGCTCTGCCGGTGTTTCTGGACTCCTTGTTGTGACTCGTGGGTTGCTTCTTCTCTTTGTTGGTA GGTGTTTGCCTTGGTTGCTTGTTTCGTGAGCTGCCATCTTTCTAATGGGTCTTGAATTCGTAAGATTTCATTGTGTATTC TTATCTATTGCATCGAATATACCTTTTTTTTAAAAATAAAATGCATATAAAAACACAAACATTCAATAATATGTATCGAA TAATATGTATCTAATCAAATACACATGCTTACACCAATCATTAAAAAGTAAAAACTGATATCAACTACAATAAAGACTTT GACTGATGAGAGAGAGTCGAGAGAGAGGCTCTGGAG
CDS sequence (LotjaGi3g1v0175800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAACACAGGTGCCAGGCTCCGTTATTCTGCGCGAACAATTGCGGTTTCTTCGGGAGCGCGGCGACGGAGAA TCTCTGTTCCAGGTGCTACCGCGATCTGCAGCTCAAGGAGCAACAGGCTTCATCAGCGAAGCAGGTTCTCAACCAGTCGC TCGCGCTTCCGGCTCCGGTGGTGATTTCCGAGCCGGCGGCGGCTTCTTCTTCGTCGGTTGTTGCGTCGCCACGCGCCGTG GAGGAGGTGAAGCCGAATGGGCCGAGCCGGTGCGTGACGTGCAGGAAGCGCGTGGGGCTCACGGGGTTCAAGTGCCGGTG CGGGATGACGCTGTGTGGGGTCCACCGTTACCCGGAGCAGCATGATTGTGAGTTCGATTTCAAGGGTTTGGGGAGGGACC AGATCGCGAAGGCGAATCCGGTAGTGAAGGCGGAGAAGCTTGAGAAGATCTGA
Protein sequence (LotjaGi3g1v0175800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEHRCQAPLFCANNCGFFGSAATENLCSRCYRDLQLKEQQASSAKQVLNQSLALPAPVVISEPAAASSSSVVASPRAV EEVKPNGPSRCVTCRKRVGLTGFKCRCGMTLCGVHRYPEQHDCEFDFKGLGRDQIAKANPVVKAEKLEKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 149 | 149 | 8.7E-69 | – | |
| PANTHER | 1 | 149 | 149 | 8.7E-69 | – | |
| ProSiteProfiles | 7 | 41 | 35 | 10.351 | ||
| SMART | 10 | 34 | 25 | 4.7E-7 | ||
| SUPERFAMILY | 12 | 57 | 46 | 1.85E-13 | – | |
| Pfam | 13 | 34 | 22 | 4.3E-11 | ||
| Gene3D | 66 | 146 | 81 | 1.0E-26 | ||
| SUPERFAMILY | 80 | 145 | 66 | 4.06E-29 | ||
| ProSiteProfiles | 88 | 131 | 44 | 12.287 | ||
| SMART | 91 | 128 | 38 | 1.8E-14 | ||
| Pfam | 93 | 127 | 35 | 6.6E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0175800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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