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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0176400 |
| Transcript ID | LotjaGi3g1v0176400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT1G08320.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q93XM6|TGA9_ARATH Transcription factor TGA9; TrEMBL-Plants: tr|A0A151RN10|A0A151RN10_CAJCA TGACG-sequence-specific DNA-binding protein TGA-2.1; Found in the gene: LotjaGi3g1v0176400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24546767..24554837) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAAAACACAAGTTGATCACAAGCTGAAAACACATGAGTTATAATTTGCTGTTTTAAGTACATACAGCCCTGAGCAGA CCCACAAGAGAACCAATAAGAAAACACAGGCGGTTAGAAGAGAGAGAGAAGTGGAGTAGGAGTCAGTGATTCTAGTGGGT TCCTGCAAAAGACCCCACCTGTCCAATTTCATTAATTTTTTTTCTTGTATTTATTCAATTTTTTTATTTTTTATTTCAGC AACCTTTCAAGCCCCACAAGTCCAAATAGAGCCTGATACAAGATTTTGGGCACCGCAGAATTAGTTTCTTAATCCGAAAA AAAAAATTCAACTAGGGACAGTGGTGCAGACTAATCAATCAGGTTTCTTCATAGAGAAGGAGAAAAAGGATAAAAAGTTT CAAAGAAAAAGAGGATCATATCTGAGAAAAAGACCTGACCCTCTTGCTGTGACAACTTACAACTTTAGATATCATCACTT TGACAAGAAAGCTTTGATCTTTCCCTGCTCTATGATATAGGATTCCATCTATTTATCCTTAGAATTTTCCAAAGAAATTG AGGTAAGGTGAACACATACAACATCATTATTATCATGTACATATTCTTCAATCTTGGTAAAATGCATATGTTTTATTCAT ATAAGTTGAATTAAATGCTAAATCTTTCAGTTTGGAACATGAGAATTGTCTAAAAAAACCCTTGCATGGCGAGTCACAGA ATTGGAGAACTTGGTTTGTCTGAGTCAGGCCCTTCAAGTCACCATGTCCCTTATGGAGTTCTTCACAGGATTGATACTTC TTCATCAAGCTTAATGTAACAAGAATGGTTCTTATGTCAAATCATTTTACTAGTATGATTGATTTATTTAATTTAAACTT TTGTTTTTTAGCAATCAAGGATCTAGTTTTGATTTTGGAGAGTTGGAAGAAGCAATTGCTCTGCAAGGAGTTAATAGTAG AAATGATGAAGCCAAAGCATGTATGTTTCCTTTTCTATCTCTTTTGTTTCCTGACAGTAGATAAGCATAACCAACTCTTT CTAAAAGCAGAGAGGAAAAAAGGGGAATTACCATTTCCAATACCATAATGATTCTGAGACAATAGGCTTGGATGGTGTGG GGTTACAATCTTAGAAACCTGATGATTAGCTTCCTCTGCCATGTGATTCATTATATAATTGAAAATCTTCATGTCTTTAT TTTGGTAATGATCAAAGTCTTTGATCCTCTCTCAAATTTTTCTTTTGTGATTCTTTGCAGCTTTTTTCACAGGCAAACCT GCTGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGAATCAACCAAACCCCAAGAGTACTAGTCTCTTAATTGTCCTT GTTTGACCATCTATTTGTACATGCCCATGATTATCATAAAGTTCAAATAAATCTAACCCTTTTTTTCATCATTCAAATCC TAAGTTTTAAAACACCAAATATTTCTTGTGAGTTGATTTTTAGCATGTACAAATATTCAAATACCAGAATACCAGAATTT TGTGTGTCTCTTTTTCCAAATATAGGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGCTCTTTCAAGTCCATTTG ATCCAGAATCTCCTGTGAGCAAAAAGGCATCTTCATCAGAAAATCAACAAGCTTTTGATCAGCATCAGCATCTTCAACAG GAGATTATGGCAAGTGATGAAGCACCAAGAACAGGCTCTTCATCACAAAATCAATCAGCAGCCAAATCACAGAATCAAGT AAAGTTTCAATCCTTTTATTTCACTAATTTTTTCACTGTTAATCTCTCAGTTCTTCTTACTTTCCATATCCCCAAAACCA GGGAAAGCTACCCTCTTTAATGCTATTTACTACTGTTATGATCTGTCCCTTCTATCTTCCCCTTCCCTCTTTCTTCTCTC TTGTCACAAAAGAACAAACACAGATCCCAACCGCTTTCAGAAAATCAAAAGAACAGAGTTTCCTGATTCCTGAACGATTT TCTGACATGAAACCATGATAGAGAAGATAAAAATTAAGAGAGGGACATGTGTACAAAGTAGTACAAAACAAAAAAACAAA TGGAGAATCTTTTCAGTACTTATCAGTTATCAAACTCTTCTTCTCATTAAATTGACCCACCACACCCACTTCGCTCAATT TAGCCAAGCCTTGTGTTTTCTCTCCCCAAGTCAAATTTGGTTTTCAAGTGTTCCAAGTTCTTCTTAACCAAAACCACAAT GGCAGATGATGATGCCTTTTGCTACCCATATCATGTTGATGATGGCATGCTTCTTCAGCATTCTGAAATGATTCCCAGAA ATTCCACAAGCACTGTAATCATGCCATCACTCAATTTTGGATTGAAAGCACAGAACCTTATATAAGCTAGTTTTAACAAT TTTCTTTTTTTCCCTCCCTCATTTGCTTAGATGCTAAAATGTTACTCTTATTAATACAATTTTTTTCTGTTTTGCTTAGT CCATTTTGATTTCAACCCATCAACATTTATCCTTTTATCCTTATCTTTTAAATTTCTTTCCTTTTCCTTCTGAAATCATC ATTTAAATAAAAAGTTTTGGTGTCTTCTGTTGCAGAGAAAGGGAGCTGGTTCCACATCTGATAAACCACTTGATGCAAAG GTTTTAATATAGTTCCAAATTCCAAGTTGTAACATTTTTTTGTTATGTGTTCTTTCATGGCTAAGATTGGATTTTTTTTT ACTGGCCTCAGACATTGAGACGTTTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTTTAAGGAAAAAGGTGTGTTAT TGTTGTACAAGTTCAATGGATTCTAGCAGAAAGTGGAAAAAAGTGAAAGAAAAGCTGTGAAATTTAATGCATTTTTTCCT TCTGTGTATGTTACAGGCTTATGTGCAGCAGCTAGAATCAAGTAGATTGAAGCTTACTCAACTGGAGCAAGACCTTCAAA GAACTCAAGCACGCTCTCAGGTTCTCTAGTCATATACTAGTATTTTATAATATAGTTGTGTTTATATTTATTTTTAACTG TTAGTGATTTTTTTTTTGTGATGTTAATTGGATAGGGATTCTTCATGGATTGGGGTGGTGTTGGAGGCAATATAAGCCCT GGTGAGTTTAGTGTCCTTTTTGCTGGTTTAGTTTTCAAATGCTAGTGATCAAAGTGAAACAATTTACTGATATTTAGTTA TTTATCATTATTTACTTTTTTCCAATGAATCTAAATGTTCAAAGTACCTAATAGAAGTCAAAATTTGATTTTGAGAGCCC ATTTAAAATCTAGTGAAGTTTTCTTTTTTTAGGGTAGAGAAGTCTTTGAATCTTGTGCTTGAAAAAAATAAAATCTTGTG CTTGAATTAGAAATCCAATATGCCAATGTTTGAATTTGATTTTGCCAAAATGTTTATTTATCTTTGAAAGTACTAACTTT CTAAAATATATAAACTATAAAAAGTTTACTTTATATTGTTTGGCTTTTCAGAGAATTATTCCATCATGATACTGAACTTT CTCACTTATGGTAAAATAATAGAGTTTCTGGAAAAGTTAACAGCAAATAAAATAAAAACTAATTATTATGCACTTTGTTA TGAAAAGGAAACGCATTATATATTATGATTAATCCATTCATAAGGAATTAAAATGGTGCTGGGTCTCAGGGTCTGTTTCA TTCCTGGCCACAATATGCAATGCATTATTATACTATAAAACATGAAGACAAAACCTTTATAAAAGCATACAAATTAGAAC CTACCACATATGGCACATACTATAGTTTATTTATTATAAACCAATAGTAACACATAATTAATTTAACAATGGTGTTGTTG TTGCAGGAGCTGCAATGTTTGATATGGAATATGCACGGTGGTTAGAAGACGACAACCGTCTCATGGCAGAGCTCCGTAAC GGACTGCAAGCGCCATTATCGGACAGTGATATGAGAGTGATGGTGGATGGATATCTCTCACACTATGATGAGGTTTTCAG GCTCAAGATTGTGGCTGCTAAATCAGATGTTTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGCTGCTTCC TCTGGATCGGTGGTTTTAGGCCCTCTGAGCTTATCACGGTGGGTGCACACATCTTATTTTCCTAATTCCATTAATTAATG TATCAATATATCAGGGTGCAATGGGTGGAAATATGGTAGATCAGTCCGATTGAAGCTAGCCTGATCTTTATCTACCTACT AGCCTATTAAAAGTCTATTTAATAGAAAATGTCATCGTAAGGAGTTTAATAGATCATGGGTTAAGAAATTACGAGTTAAT ATGTCTTTCTACATTTTCATATATTTATATTATTAATAAAAATAATAATATGCTTATTCTGATCCATCGAGTCAAATAGA TTTTTTTATCACTTTAGCCCAGTCTTCGGAAGAAGAATAAACTTGAGATTTTTTAAAAGCGACTCAGGTCAGACCTTTGA TGGGCTAGGCCGCGAGCCCCTAATAGGTCGTCTAACTTACTTCCACCCTTAGGTGCAAGTTTGAGTCCTCACTCGTCCGC TTAGTATGAAATAAACTGTAGGGGTTCTTTGAGTCTGACTTTATCTTGGACAAGGGAAAATTGTGATTCTATTGTGGGTT ATGTTAAAAATTTGCCCGCCTCTTAGACCATGTTTTACATATTTAGTGTATGTTATTTACAATATGTTATATATATATAT ATATTAAAATTCATTTATAAAGAATTTTTTTTAACCTGTGAACTCTTTTTGTCCATGCTACATAAAATTTAAAAGAAAAA ACTTTTCTTGACAACAAAAACAAAGTTAAAAGGGACTGGTCACTTTCTTTTTCTTTAATGAAAAAGGAGTGTGTGATTTT CTTGGATAGTGAGACAAATAACTTTCTTGGTAATGGCAGTGCTGTTATAGTTATGATAGTAACAGGATCCAATGGCAGTG ATGAGTTACTGTTCCATTGCCAGTTAAGACTAATAGTTGGCATTATTAATTCAAGGGTAGCATAGCTAGCTAACAGTTTC AAGTGTGATTTTTGTTTTGTGGTCAGATGTTGATTCAACAGTTGGAGCCACTGGCGGAGCAGCAGATTATGGGGATGTAT GGCGTGCGCCACTCTTCACAGCAAGCGGAGGAGGCTCTTTCTCAAGGCCTTGACCAGCTTCAACAGTCTCTCGTTGACAC CATTGCCGGAGGACCTGTTGTTGACGGTGTGCAACAGATGGTGGTGGCCATGGGCAAACTCGCCAATCTCGAAGGATTTG TTCGGCAGGTACGCATACATTTTTTTCTTTAGATAAATTGCATTCAACTCATATATTTTTTAACTCTTATTACATGAACT ATCATTCAGGTATGCATACATTTAATTTATGGCTTTGTCTATTGTCTTCCAATAAAAATTTGATTTAAGTAGAAATACTT CTTAAAAAATAACATGTATTAAATAGTTATAAAACATAGTTTATGAATAATCATTTCTTCCACCAAGGAATTACCCTACG ACGTACCTATGTGGCTATCTTATTCACACTCTTTAAGAAATTTAGTTCATGTGATTAATAACATTAAGTTTATTTTCAAT CTATACCAACTTTTTAAAATTATCCATGACCTACTCTTCTTAACTTTCTATGCATTATAAAAGTGGAAGAGAGAAAAATT CTAATTAAATAAGTATATTCTTGTCTCTTGACAAAAATAATTAATGAACCACAAACTTCAAAGTCTATAATTCAATTTAT TTCTTAATAAAAATTGTAAATCCTGATTAGATGTTTGGATAAAACTTTTTCATACATGATAATTAAACTTATCTAAAAAC ACACCTGCTAACATTGACTTGATTAATTTATTATATTAGCTTAATTAATCGTGGGATGATTTTTCTTGGGTGTAAATATT ACAACTTTTTAAAAGTACAAGATTTGGTGGGGATGTTGACGTAAAGCCCCAGGTGACGACTTGTGTATTTGTGTTTGTTG CAATTTCTGTTTAGCTGATGATTTCATGTTAGACTAACACTTGTATTGCTTGTCAATCTAAACCTTCTAGATTATAAATA CTAATTGTTGCTTAATGAAATTTACAGTTGAAACGAAACCACATTATAAAAAGTAGGCTTGGGAAGGCATTGATTTACAC TATTTTTATGGGATTGATAGTTATATGGCACTTCAATAAGCTTACAGCGCTAGCTTTCTTCATAAATGACACACAGACAT ATATAAATTTATATATACATCATATAATATATATAATATGGTTGTGTGTACGAAAATTTCACCTGTCCTCCTTGAATAAA ATTAGGTTGTATACATGACTTTATATAAGGTAGTACTTGTATTCTTTTTTACCTGCTCTTTTAGAATAAATTCAAAAATA ATGTTATTAATTTCAATTTTTTAGCTTACATATGTAACATGGTATAAACAAAGATATGCAAAAGCAGATCGAAAGTTAAA AAAAAAAGCGTTACCAAACAATGATTGTTCTACGGTGACCTTGTTAGAAATTGATTTCATGTGTTAAGATTAATTTGCAA GAATGAGTTCTTTTAATTTATAAATCATATTTTTCTTAGTCTATAGTAGACGAAGTCATCAAACATATGAGTATTAACTT TCAAATTTGATGCATAGATAACATTAGAAATAAGAACCTTGTGCATGATTATTGACACTAACAATGATTTATGTTTGTGA ATTAAAGGCTGATAATTTGAGACAACAGACTCTTCACCAGTTGTGTCGATTACTAACAGTTCGTCAAGCAGCACGGTGTT TTCTTGTGATTGGAGAGTACTATGCACGTCTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCAAGAGAGTAAGTTAAT TCATTTCTTACATCCCATCTATCTTATAATGTGGTCCGAAGTTTTCACATAAGAGGATCGTAATGGGTCTGTAACTAATA TTTTTATCGTAATGGGTTTGTAACTAATATTTTCTTTTGGGATATTGAAACAGCAACTTGATGAGCGATGAGAACTCATG CCAAACAACCACAGATAACATGCAAATGGTGGTGGTTCAACCTTCTCAGAATCATCATTTCTCCAGTTTCTGAAGAAAAA CTACCGGATTTCGTTGGCTACAGATTTAGAATGAATGGTCATGCATCTAGCTAGAAGAAAATATTTATTTATTTATCTTT TTCAATACCATGCATGCGCTTGTGTCTCTGTATGTTCTATTGTAAATGTAAATCGAGTTTTATGCGCATGATGATGATGA GGAATTAAGCTCCTACTTTAATTTAGCTAGAGAGAGAAATGAAAAACAGTTTATGAAAAGGTGCATTATGTGAGATAAAG TTTCCCTAAAATTATTGATGTCATCTTTTTTTTTTCTCTTCTGCTTTTTTTTCTTTTGTATATAATATTATATATTTATA CATATATGTATATGACTTTTGAACACACCAAAGGGTGGCACAAATTCGGAGAATAGAGAAAGTGAGGGAGGTTGTTGCAT TGCATTTGCAAGTGGAGTTTTCTTTAGTGTGGAGAGCACAAATGGATAAAAGAATATTAATTAAGAAGATTGTGTTGGGG TGGTGGTTACTTAACAATTTGGATGGCTTTTGTAGCTGAAAAGAATAGAGGTTGTTTCTCTTCATTTATTGCATGAATTG GTTGCGAATAGGATATTAATTTGTTACATGAATTTGGTGCCTTTGAAACCGTTTTTGTTTGTTTGTGTTGAGTATGTGGT GACAATGGAAGAATATAGACAAGTCAAGTGCATGCATGTGTGTGTCGGTCTCAGAATTGCATGCATGTAAGTGGCACGCC AATTAGTTTCCATCTCAATACACCGACAGCTTCCTAACTCTGTTTTCTCCTTTGTTTCTTTGCTTCTACTTTTTATCCCT TCTTTTGTTTTTCCTGGTTCATTTTTTTTTTTCTTCTTTTGTTTTTCCTGGTACATGTAGCTTTTCTTCTTCCTATGCGC TGCTATCCATGGCATATGTTGTTTGCAAATAACAGCATAGTGTTTGCCCGGGCAACGATGGAGGAGGCAGC
CDS sequence (LotjaGi3g1v0176400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAGTCACAGAATTGGAGAACTTGGTTTGTCTGAGTCAGGCCCTTCAAGTCACCATGTCCCTTATGGAGTTCTTCA CAGGATTGATACTTCTTCATCAAGCTTAATCAATCAAGGATCTAGTTTTGATTTTGGAGAGTTGGAAGAAGCAATTGCTC TGCAAGGAGTTAATAGTAGAAATGATGAAGCCAAAGCATCTTTTTTCACAGGCAAACCTGCTGCTACACTGGAAATGTTC CCTTCATGGCCAATGAGAATCAACCAAACCCCAAGAGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGCTCTTTC AAGTCCATTTGATCCAGAATCTCCTGTGAGCAAAAAGGCATCTTCATCAGAAAATCAACAAGCTTTTGATCAGCATCAGC ATCTTCAACAGGAGATTATGGCAAGTGATGAAGCACCAAGAACAGGCTCTTCATCACAAAATCAATCAGCAGCCAAATCA CAGAATCAAAGAAAGGGAGCTGGTTCCACATCTGATAAACCACTTGATGCAAAGACATTGAGACGTTTAGCTCAAAACAG AGAAGCTGCAAGGAAAAGCCGTTTAAGGAAAAAGGCTTATGTGCAGCAGCTAGAATCAAGTAGATTGAAGCTTACTCAAC TGGAGCAAGACCTTCAAAGAACTCAAGCACGCTCTCAGGGATTCTTCATGGATTGGGGTGGTGTTGGAGGCAATATAAGC CCTGGAGCTGCAATGTTTGATATGGAATATGCACGGTGGTTAGAAGACGACAACCGTCTCATGGCAGAGCTCCGTAACGG ACTGCAAGCGCCATTATCGGACAGTGATATGAGAGTGATGGTGGATGGATATCTCTCACACTATGATGAGGTTTTCAGGC TCAAGATTGTGGCTGCTAAATCAGATGTTTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGCTGCTTCCTC TGGATCGGTGGTTTTAGGCCCTCTGAGCTTATCACGATGTTGATTCAACAGTTGGAGCCACTGGCGGAGCAGCAGATTAT GGGGATGTATGGCGTGCGCCACTCTTCACAGCAAGCGGAGGAGGCTCTTTCTCAAGGCCTTGACCAGCTTCAACAGTCTC TCGTTGACACCATTGCCGGAGGACCTGTTGTTGACGGTGTGCAACAGATGGTGGTGGCCATGGGCAAACTCGCCAATCTC GAAGGATTTGTTCGGCAGGCTGATAATTTGAGACAACAGACTCTTCACCAGTTGTGTCGATTACTAACAGTTCGTCAAGC AGCACGGTGTTTTCTTGTGATTGGAGAGTACTATGCACGTCTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCAAGAG ACAACTTGATGAGCGATGAGAACTCATGCCAAACAACCACAGATAACATGCAAATGGTGGTGGTTCAACCTTCTCAGAAT CATCATTTCTCCAGTTTCTGA
Protein sequence (LotjaGi3g1v0176400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASHRIGELGLSESGPSSHHVPYGVLHRIDTSSSSLINQGSSFDFGELEEAIALQGVNSRNDEAKASFFTGKPAATLEMF PSWPMRINQTPRGGSKSGGESTDSALSSPFDPESPVSKKASSSENQQAFDQHQHLQQEIMASDEAPRTGSSSQNQSAAKS QNQRKGAGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRTQARSQGFFMDWGGVGGNIS PGAAMFDMEYARWLEDDNRLMAELRNGLQAPLSDSDMRVMVDGYLSHYDEVFRLKIVAAKSDVFHLINGMWTSQAERCFL WIGGFRPSELITMLIQQLEPLAEQQIMGMYGVRHSSQQAEEALSQGLDQLQQSLVDTIAGGPVVDGVQQMVVAMGKLANL EGFVRQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYARLRALSSLWASRPRDNLMSDENSCQTTTDNMQMVVVQPSQN HHFSSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 34 | 463 | 430 | 1.1E-203 | – | |
| PANTHER | 34 | 463 | 430 | 1.1E-203 | – | |
| MobiDBLite | 80 | 179 | 100 | - | – | |
| MobiDBLite | 88 | 169 | 82 | - | – | |
| SMART | 174 | 231 | 58 | 2.3E-4 | ||
| ProSiteProfiles | 176 | 220 | 45 | 9.232 | ||
| Pfam | 177 | 219 | 43 | 8.7E-8 | ||
| Gene3D | 178 | 227 | 50 | 3.2E-9 | – | |
| SUPERFAMILY | 180 | 227 | 48 | 1.56E-7 | – | |
| ProSitePatterns | 181 | 196 | 16 | - | ||
| Coils | 197 | 224 | 28 | - | – | |
| ProSiteProfiles | 243 | 451 | 209 | 30.877 | ||
| Pfam | 261 | 335 | 75 | 3.8E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0176400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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