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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0177500 |
| Transcript ID | LotjaGi3g1v0177500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GTPase-activating protein; TAIR: AT5G22400.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|Q9FMR1|RGAP1_ARATH Rho GTPase-activating protein 1; TrEMBL-Plants: tr|G7ITU3|G7ITU3_MEDTR PAK-box/P21-Rho-binding domain Rho GTPase activating protein; Found in the gene: LotjaGi3g1v0177500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24658963..24664590) extracted from Lotus japonicus Gifu genome v1.2.
TTTTATTTTTTTTAAAGTTCAATATATATTGATGAATGAAAAGGTCAGAGACCTGTACAATAGGAACCAAAAGACAACAC ATGAGAAAACAAGATGAAGATTCTAAAAAACAAACAATAGGAACAGGCTCCTAAAGATACAATACGAGTACTAACAGTGG CTTTCATAGCCTACAAAGCAAGGAAATAGCTAATAAAAATCAAGGGGAAGAGCCACAAAATGGCTAACATAAAAGATCCT TAATTTTTGTCCTCCAAATCCCTAACTAGAACCACCACAGCCTTCATCTTCTCCGTCGCTTCTCCCTCACGAGAAATTGG TCCTTGCCACAAAAACCACAAAAGCTCCAACCTAAACTCAAATCCATCTCCATCGCACCCTTCTTTGCGTAACCAAGCCC CAGACTCACTAAGACTGAAACACAGACGATGGAGAAGATGAAGAAGCGAGACCAGATACACTACCACTCACATCCAGATT TCTCCACCACTGCTCCTCGTCGTTGAGAACCGGATCGGAGCCGTACAACCACCGTCGGACCAGATCTGGCACTCTCCCCT TCGATTCACACCAGATCTGCAACTCTTCACTTCGACCCACTCCTCTGCAACGTTAAGCTTTGGTTAGGGGAAACAAGGAG AAATAAAAATTAAAAAACAAAAAGAGAGAAGGAAAAGGAGAAATTCACCTTGATGTTTTCTTCTTGGTAGTGCTACTGCT GCTGATGGTGCCTGTGCTGCTGGAGATGGTTGAAGTGAGAGGAGGAGAGAGTGGGAGGGAGAAGAAGGAGAAGGGGAAAA GTCTAAAATATCCCGAATGCAAAGTCTGAAATGTCCCTGGTCCACCGGTGGACCAAAAAGAAAGTTCCCCACCCTAGTGG GCACCATTACTTTTTCTGGTACATAGATACATCATTACTTTATATTTAAACTTTTTTAACATGGCTCGTTTCAAAAATAA TAAACAAAAAAAACAAAACAGAAACAGAGCTGGGTAGTTACTAGTTACAAAGCTTCCACCCTCTTCACTCTTCATTTCAT CTTCACCACTTTCTACTCTTCCTCTTTCCCTGTCTGTTAATGTTGATGTTGGTGTGTCTCTCTCTCTGACACTGTCACAA GAAAGAGAGAGAGAAAACAAACACTACTCAAGCAGCGTCATTTGCTTGTTCAACGCTCCACAACACTCAACAACAACAAC AACAACATATTTAATACTAAAAAAGTTCAGTTAATGATTCTCACGTCCCACATTCTCTCAACACAACTTTCCCTTCAATC CAACTCCAACTCCAAAACCCATTCTTCAAATTGCCAAATCAAGCTTTCTTAAATCACAAAAATCATATATTTGTAGTGCT TTTGGTTTTTTATATTCTAAGTAAAGGCCTTTTTCATTGCCACCAATGACCCAGGTCCTTCATTTTGCTTCTTCTTCACC AACAACCTCTTCCTCTCCCTCTCCCTTCTCTTCTTCCCACGCCATTTTTGCAATTCTTGTCACCCTTTTCAGGAAATCAT TTGTTGCTGCTTTCAAGAGTGGCAGGAAACACCTCTGTGCTATGGACATAGGGTCCCCTACTAACGTGCGCCATGTTACT CATGTCACATTTGATAGGTTCAATGGCTTCTTGGGTTTGCCTGTTGAGTTTGAACCTGATGTGCCCAGAAGGCCTCCCAG TGCTAGGTACGCTGCTTCTTCACCTTCCATGTGCCATTGTTTGGGTTGAATTGTAGTTACATTACTAAGGGCGCGTTTGA GTAAATAGTTTAATTAAGCGCTTATCACATAAACGTTTATTCATAGGCTAATTTGAGAAGCTTATTGAAAGAAGCTTAAA ATAGGTTATAGATAGGTATAAACGCTTATCCATAAGCTAATCTGAGTAAGTTATGAAAATCTATAGGCAGGTCATAGGCT GTCTCAAACACTTGCATAAGCGCTTATGGTATAAGATAAGCTCAAATAAATACTTCCAAACAGGGCCTAAATGCATGTTT CATTTTGAGAGAAAAATAGATTATTTCTTTTTAAAGCTCCCTATGTTTTTTATTATAAGCTGTTTTTTTTAAGTATGCTA AGCACAAAACATAAGCTTATTTTCTTTAGATGCCGCCTTCAATTTTTGATTTAGTTATTTTCACTAATTTTATATGTAAT TTTTGCTTTAATTTGGTTTTTTGTTCCCTTGTTTGATTTTCACATGTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCC ATGCAGTTATCTTATGACTCAAGAGGGAACAGTGTGCCAACAATTCTGCTGCTAATGCAAAGGCATCTGTATGCTCAAGG AGGACTGCAGGTTGGTTGGTTTGCATTAAAGAAGAAAGAAAGATAGTTCTTCTTTATATAAGTCACAACACTATGGGGAC TTGTTCTTCTTACAAATGACCAATTTAATGGTCATGCTTAAGTAAAAAGTTCAATTTGCACATGCAGGTGGAGGGGATTT TCAGAATTAATCCAGACAATAGTCAAGAAGAAAATGTCAGGGATCAATTGAACATGGGATTAATCCCAGAAGGTATTGAT GTACATTGTTTGGCAGGACTAATTAAGGTATGACTTTGCAACATGATTGCCTCTGTTTCCTCTGTTCCTGTATTATGCTT GTTTAGGGGATTGATCTGAATGATCATGTAAAAAGAAGTCTCTTTAATGATATGATACTGGTGAATAGTTTTGCTTGCAG ATTTTGATTTCTAAAACTTTTTTTCCAAAAAGGGCAACTGTTATCTTTTCCAAAAAAAGTTATAGGTCTAACAAATACTT ATCATTTTCAAACAGTTATCTGTCAAGCCTAATAAATGAGACGAATACACATCATTTTCAAAGTGTATTGGACTGAAAGT GCGACATTGCATATCCAGTTTGTTATAAATAACGGATAATGGATTAAATGAATCATACTAGCCATGCAATATTTGAGCTG TTAAACTGGGCTTCTGAAATATCCTCTGGTTATTGAGAGTTTATTATCACTCATTCACTCCTATATTTTTATTTTGACTC TTATCTAACTATCTTTTTCCGAATTTCCCTAAAATATCCTTTATTAAATAGTAAGTCAGACAAGTGTTCTCTTGCCACTC CTATACTTGTCCAAATTTCTAATTAGCCATTGCAACAATTTGTAAAATGCTACAAATCACTTACTACTATTTGATCTGAA AAGTACATTACTTGTGTTTTGCATCTGTAAGTTTTATGATCCTGTTGGAAACAGATCTTATGATCCTATTGTTCTACTAT TTATTTATCAAAAACTTGCATCTTTAAAATGATTCAGTTAAAACAATTCTATCTTTTCTTTTTTCATTGCGCTTACTAGA CAGCTCAGACAGAACCTGATAGTTGTATTCCCTTTTCACTTTCCCTGTATCATATGCTGGTCAAATGCATCCATATTTAC CTCTGCTGCTGTCTTAACCCTCCAGCTTATTTACTCCCAGCCTAAAACTCATGTCTTCAGGAAGGAAAATGATTATGAAA CGAAATTTCATTTCAGTTACCACCCGAATCTGATTGCTCAATACCACACTATTTGGACCCTACCATTGAATGGTAATCAG TACCCACGTTACTATTCGTCAAGTCTATGTTAATATTCGTCCTGTTCATGCAGCCATTTCTTCGCTCCATATAGCACTTC TCCTTGAGTAAATACTCATATTTCCAATCCAACATCTTAGTTCAAGTGCTGCTGTTCATGAACCTACAGCACTACTTAGC TGGAAATGTCTCCTCTTTTCGTATAGTTTTGTCCAAGCATGTAACCATCAGAACCCATTCCCATTTCATTACACTAGTAG CAAACCGTCATATTCATGAAGGGATGCAGCAAGGTAAATGCTAGGAGAAACTATTTCTATGGCTTCTACTTACATTTTCT TATTTGTTTGTGATTTTGTTTTGGCAAGAAGGGGAGGTTTTATGTATTGTATACACTATATGATAATTTAGTTTGACATT CTTGTACTTTTCAAGGCTTGGTTTAGGGAGCTTCCTACAGGAATTCTGGATTCATTATCGCCAGAGCAGGTAATGCAATG CGAAACTGAGGAAGAATGTGTTGAGCTAGCAAGGAATCTACCTCACACTGAAGCTGCACTCTTGGACTGGGCCATCAATC TGATGGCTGATGTTGTCCAACAGGAACATGTTAATAAGATGAATGCGCGTAACATTGCCATGGTTTTTGCACCAAATATG ACTCAGGTGTGTTCCAATAACTCAATTCTCAAGTTATTGCAGGGAAGAGAATGTGCTATTTTATCTTTGTACTTTATTAA ATTGCATATGAACATCTTGTAAATGTAATTGAAGTTGTGATGAACCAATTGGTAAATGGCACATGAATGATTATAAGTTA TATTTCTAACACGCCCCATCACGCAAGAGCCTTCTTGGGCTTGAACCCTGAACAATGTACAGGTCCACCTACCACGTGCT GAAATTCAACTTTTTATTAGAGTAATGAGGGAACCTAGGACCGAACTATAAACCACTTGGTCATAGAGGCTATGATACCA TGTCATGAACCAATTATCCCAAAAGCTTAAGCTTTAGGGCAAAGGACACATGGATGGTTATTCTATATTATATTCCTAAC ATAAGTTTTCTTCTATATGAAAGTATTTTCTGCACTTTTGGATCATGGTTCTTTTGACTATTCTTTTTACCTTTAGCATG TTTGGGTAGCTTGTTTTTCCTCAATCAAATTTGGCACCCATAAATTGCTCACAGAAGCTCATCTTGAGAATAGATTTTAA CTTTATAATCAATTGTAGAAAGATTTCCAAGCATGTACTAAGTTCATGAGAGTTTTTGGTCTTTCTGGTTGCAGATGGCA GACCCTTTCACTGCATTGATGTATGCAGTTCAAGTGATGAATTTCTTGAAGTCACTTATATTAAGGACACTGCAGGAAAG AAAGGATTCTGTGGTAGAATCTCATCCTAAATTATATCCAGGACCATCTGATGAGAATGGTAACCGTACACTTTTGGAGT CTTGCCAGCAAGATACTATGGCAGAAAATGAAGAGGCTGAAGAAACAGTCGTATCCGAGAAAACTGTCGTAGAATGTTCC CCTGAACCACTCCAAAATAACACCTCAACTGGAGGAGAATCTGACAGTTTGGTAAGCTCTTCTGAGAATACAATTTGCAA TGAGGACTTGTATTGCGAGTTTCCACCCAAAGGAAACATGGGAAAGGGTAAGCCTGCACAATCTAGTAGCTCAAATGCTA GAAAAGGGACCAAAAAGACCCGAGGCAAGCAACCTGTGGTTGATCAAACAGTGCCAGCTGAGAAAAGGGGAATGAGGAGT GCGAGCAACACAGATTCAAGATATGAAAGAGTTGAAGCCTGGCGGTGAAAGAAGCACTGAAGTGTAAATGGATTATTTGA CATCATCATGGCCTTGTAAGTTTGTGAAGTGATTCCTGTATGTTCTCTTCATTTTCTGGGTTTTAATTAAATTATATGCT TTCAAGAATATCACTATGATCATACCAACATTGTAATGAAATTTCATTTCCTCAGTGTTCACTTATGTTCATAATTATTC CTTAACAATAAACTCATTCATTATTGCA
CDS sequence (LotjaGi3g1v0177500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCCTGGTCCACCGGTGGACCAAAAAGAAAGTTCCCCACCCTAGTGGGCACCATTACTTTTTCTGGTTCAATGGCTT CTTGGGTTTGCCTGTTGAGTTTGAACCTGATGTGCCCAGAAGGCCTCCCAGTGCTAGTGCAACTGTTTTTGGAGTTTCAA CAGAATCCATGCAGTTATCTTATGACTCAAGAGGGAACAGTGTGCCAACAATTCTGCTGCTAATGCAAAGGCATCTGTAT GCTCAAGGAGGACTGCAGGTGGAGGGGATTTTCAGAATTAATCCAGACAATAGTCAAGAAGAAAATGTCAGGGATCAATT GAACATGGGATTAATCCCAGAAGGTATTGATGTACATTGTTTGGCAGGACTAATTAAGGCTTGGTTTAGGGAGCTTCCTA CAGGAATTCTGGATTCATTATCGCCAGAGCAGGTAATGCAATGCGAAACTGAGGAAGAATGTGTTGAGCTAGCAAGGAAT CTACCTCACACTGAAGCTGCACTCTTGGACTGGGCCATCAATCTGATGGCTGATGTTGTCCAACAGGAACATGTTAATAA GATGAATGCGCGTAACATTGCCATGGTTTTTGCACCAAATATGACTCAGATGGCAGACCCTTTCACTGCATTGATGTATG CAGTTCAAGTGATGAATTTCTTGAAGTCACTTATATTAAGGACACTGCAGGAAAGAAAGGATTCTGTGGTAGAATCTCAT CCTAAATTATATCCAGGACCATCTGATGAGAATGGTAACCGTACACTTTTGGAGTCTTGCCAGCAAGATACTATGGCAGA AAATGAAGAGGCTGAAGAAACAGTCGTATCCGAGAAAACTGTCGTAGAATGTTCCCCTGAACCACTCCAAAATAACACCT CAACTGGAGGAGAATCTGACAGTTTGGTAAGCTCTTCTGAGAATACAATTTGCAATGAGGACTTGTATTGCGAGTTTCCA CCCAAAGGAAACATGGGAAAGGGTAAGCCTGCACAATCTAGTAGCTCAAATGCTAGAAAAGGGACCAAAAAGACCCGAGG CAAGCAACCTGTGGTTGATCAAACAGTGCCAGCTGAGAAAAGGGGAATGAGGAGTGCGAGCAACACAGATTCAAGATATG AAAGAGTTGAAGCCTGGCGGTGA
Protein sequence (LotjaGi3g1v0177500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLVHRWTKKKVPHPSGHHYFFWFNGFLGLPVEFEPDVPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLY AQGGLQVEGIFRINPDNSQEENVRDQLNMGLIPEGIDVHCLAGLIKAWFRELPTGILDSLSPEQVMQCETEEECVELARN LPHTEAALLDWAINLMADVVQQEHVNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMNFLKSLILRTLQERKDSVVESH PKLYPGPSDENGNRTLLESCQQDTMAENEEAEETVVSEKTVVECSPEPLQNNTSTGGESDSLVSSSENTICNEDLYCEFP PKGNMGKGKPAQSSSSNARKGTKKTRGKQPVVDQTVPAEKRGMRSASNTDSRYERVEAWR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 312 | 295 | 1.3E-165 | – | |
| PANTHER | 18 | 312 | 295 | 1.3E-165 | – | |
| Gene3D | 37 | 243 | 207 | 1.2E-35 | ||
| SUPERFAMILY | 47 | 226 | 180 | 3.53E-38 | ||
| ProSiteProfiles | 52 | 237 | 186 | 26.392 | ||
| SMART | 66 | 229 | 164 | 1.6E-33 | ||
| Pfam | 69 | 203 | 135 | 1.8E-21 | ||
| CDD | 69 | 225 | 157 | 2.17764E-35 | – | |
| MobiDBLite | 236 | 255 | 20 | - | – | |
| MobiDBLite | 274 | 305 | 32 | - | – | |
| MobiDBLite | 284 | 305 | 22 | - | – | |
| MobiDBLite | 321 | 380 | 60 | - | – | |
| MobiDBLite | 365 | 380 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi3g1v0177500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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