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LotjaGi3g1v0180600.1

Overview

Field Value
Gene ID LotjaGi3g1v0180600
Transcript ID LotjaGi3g1v0180600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description NAC domain protein,; TAIR: AT2G27300.1 NTM1-like 8; Swiss-Prot: sp|Q9XIN7|NAC40_ARATH NAC domain-containing protein 40; TrEMBL-Plants: tr|G7IHH0|G7IHH0_MEDTR NAC transcription factor-like protein; Found in the gene: LotjaGi3g1v0180600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:25129583..25133439) extracted from Lotus japonicus Gifu genome v1.2.

ATAGTGTGTGAGTGTGTGTGACTTGATTAGTAGTACACAAAAAACATGAAGAAAAAGAAAGCAGACGGTCACGGTGCCCA CAGAATGGAATAAAAGCACAAGCACGTGAGGTGATAACATGGGCATGCCACATCGGAACCTTATTAACACAACACTTCAT CTGCTACCGACTTTGTCTGTCTCAACATAAATACTCTTCCCCCACGCCACCACCACCTGACCCACCTTGCTTGCCGCACA CAAGCAAGCAAAGCACCAAAATCACAAAACCAACGAAAGGAATCAGAATTCAATTCCTCACCACCTTAAACCCTTGATTA ATTCTTCATATTTTTGTGTTTGTTTTTGAAAAACAGAGGAGGGTTGTTAGAGTTTTTGATCATGGAATTGGTTTCCAGAG AAGTGCCCTTGTCAATGGCTACCCCCTCCATGTTTCCAGGGTTCAGATTCTGCCCCACAGACGAGGAGTTGATTTCTTAT TACCTCAGGAAGAAGCTTGATGGCCATGAAGAGAGTGTTCAGGTCATTTCTGAGGTTGAAATTTGTAAATATGAGCCATG GGATTTACCAGGTTACTCTCTTTTTCCTTTTCCTTTTCTGGGTGTTTCTTTTTTGAATTGAATTCTATTTCTATTTGGGT CTTCACTTTGAATGTCAAAATTGAAACTTTGCTACCTGCTTGTCTCTTTCAATTGGAATCTTGTTCTACTAGCTCATGTG ATGTGATGCCTGTGAGTTTATTTCATTTTGATTGAATCATGTGTGTGTAGGTAGGTGGGACCGTGGGAGCTTATGTAAAT GTAAGTGGGTCATCATCATGTATAAACAGGGCTCTTTGAATTTTTAGATTCTCTTATTTTTTTACACTGCTTTATTCTCA TGTTTCTATAGCATCATGTTGATACCTTGTGTAAAAGTCACACCTCTGTGGCTCTGTTTTCCATACATGAGAAGAATCAA TTTCTTGCACTGTGAAAATTGCGTTGGATTTTTTGATATACACATCCAATATTTTGATTCTCCTAGTGCCCCCTAAGCTT ACAGCTTGTTTGGACATTTGGGTTCTTTTTTAAATTGAAGATGTTTGTGTAGTAGTACTAGCTGAAAAATGAAAAATGTC AAATGCATTCAGCTCATGGCTGTTACTGAATTCAACAGTGAATTTTTTATTTAAATAGTTCAATAACAAGAAAATTTTCT TGTATAGAGCCAGTGTTATTATATTAAATGATAATTTTCCTTAGAGGAACCTTATGATAAAATATGATTCAGCTTTGAAC AACTAGTGTGTGTAATGATACTATTGGAAGCATAATTTTTGTGACTGGTTGGACATTCATGCAACATGTATCTCAATTCT TGACTTGTTTCTTGTTAAAAGTAAAAACAGAACATATGGAAAGAAACTAATGTCTGTATCTTGTGTTGACACTTGACAAT GAAATATGTGAAATGAAATGTATTAGTTGTCCAATCTTACTTATTCATTCTCTTAGATATCCATTTTTTAACTTTGTGAA AGTTTAAACTTGGCACTAATTGAAACACTGACCTGTTAGCACTTATTTGAAAGCAGCAATGTCGTTCATTCAATCAGATA ATGAGTGGTTCTTCTTCTCTCCCCGTGGAAGGAAGTACCCGAATGGTTCTCAAAGTAAAAGAGCAACTGAATGTGGCTAT TGGAAGGCCACTGGGAAAGAGCGCAATGTGAAATCAGGCTCTAACGTTATAGGCACAAAGCGGACTCTGGTATTCCACTT GGGGCGTGCACCGAAAGGAGAGAGGACCGAATGGATCATGCACGAGTACTGCATCAATGACAAGTCTCAGGTGAGTAATC ACTAATCAGTGTTCTTCCTGTATAACAAGGTTGATTCAAGCATCCTATGTTTTATGTTATGTAACTGTAAATAAGTTATG TTTGGATCAATTTCTTTTTGTTCTGAATCAATTCTAAAACCAAGAAGATCATTTCAAATCAATTCTAGAAGGATTTCCAA TCGTGTGTTAATTCTAACATGTTTGTATTGACATCTCTTTCCAGAAATTCTACCACCCAGATGCTACTACAGAAGTTCCT ACCCATAATTGATTTTGGTTTTAAAATTAATTGTAGAAGGATTTCCTAACATGCACTTAATGTTATGTTTCAGGATTCTT TGGTGGTTTGTCGCCTTAAGAGGAACACAGAGTTCCGTTTGAGCGATGCTTCAAATAGAGCTTCTTCAAGTCAAATCCAA CCAGTGCATTCACATGAAAGCTCAGATGGAGGGATTGATCAAAGTCAAAGGGGTCTGGGTGAGGGTGCGCAAGACAAAGA GGTTGGGTGCAGCTCCAAGCGGAGCAGCAGCAGTTATGGTTCGGAACAAATTGAATCTGTATCTGAATCGAATCAACGTC CAGCTAATGACGGTCATTTGACTGAATCTTCTGGTCACCTAAAGGTAGCAGCCATAATAATCTATATATGTTACTAGATT GGATGAAATTGAGTGGTTCTAAATAACACAGTTGTTGTTGGTATAGGAAGTAGATGAAGAGGATTGTTATGCTGAGATAC TGAAGAATGATATCATCAAATTAGATGAATCCTCAATCTCGAAAGCCGGTCACACAATACCAGAGGACCCTGCACAGTTG GATAACTACCAAGGCACAGCGCAACGAAGGATAAGATTAAGGGTTAAAAGGCCAAGGCGTTCTGCTGAAGGAGCTCGTTG CTCGAGCAAAATGCACTCATCCAAGAGTAGCTTCTTTGCCAGAATTACCACCAGATTGGTGGTGGTATTTGCTTTCTTGG TTTTCACTTTGGTAGGTGTATGTTTTTGGTCTTCATTTGGTACTTGGTCACGAACAAGTGAAATTTAGTGGCGTAATTAT TATTAGCCCTTCTTCTATGCTGTGCTATGCAAGTGTAGGGAAGGTTAAACCTGTTCCTTTAGAATTTGATGCATTAATTA GGCTTTGAGATTTTTTGTATGCAAATGAATGGTGATCTCCTCTGCGCCATGAGAATATGCAGTGAGCTTTGGGATGGATG GAATCTCATAAGTGTATCCTTCCGATCAAAGATGACCTGGGCTGAGATACCCACCTGAAAAGGCCCAATTCAGCCCTAGC CTGATCCAAAAGTTATGTTCTATATGTGGTTTAAATAGAAAGTTGAAATGTTTATTATAAAAAAAATCAGAAGCCTGTGA CAAACAAGTTGTAGAAATGTAGAATAGAAAAAAGAAATGATGAGAGATAGTATGTTTGATTTTTTGATTTTACTATAAAG GTTGATTAGAAAGTAGTGACCAATTAAAGAGTTTCTTTGACATCTATCTTCATTGACCCATTTGGCAAGTTGACTCGACG GGTTCAACCTTATTTTGTTATCCTTGTTCCTTTTAAGTCCTTACCTTTCCAAGATCGGCACTAAACCCATCACCATATTG ACAAATCATAGTGAATGAGAAATTATAATGAACCTCACAGATGTCCAATCAAACTGTAGTGAATAAGAAAACAAGCCTAT GATAAACCTCACAGATGTTCGATCGAACCAGTTGCAGGTGAAGTTGAAACGATGATCAAAGACCCTAGTAACATGGGGAA AATGTGTAAGAAAAAAGAGAACTCATTGAAGAAAAGTGGCTTCATTGTGGAGTTCCCTGCAAGGAAACTCACTTCTCTAG TCATTGTAGTGGAGACTCCCCATCTCTAGTCATTGTAATGGAGACTCCCCACCCCGTTGTTAGAATTTTGTGTTAAAGGG GCGGGGATCCAAGAGTATATAATAGAGTTTTAAGTACAACATGTAAATCTTATCTCTCTTTTTATACGTGTGTGTGCGCG TCCGTGCGCCGTTTGTG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0180600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAATTGGTTTCCAGAGAAGTGCCCTTGTCAATGGCTACCCCCTCCATGTTTCCAGGGTTCAGATTCTGCCCCACAGA CGAGGAGTTGATTTCTTATTACCTCAGGAAGAAGCTTGATGGCCATGAAGAGAGTGTTCAGGTCATTTCTGAGGTTGAAA TTTGTAAATATGAGCCATGGGATTTACCAGCAATGTCGTTCATTCAATCAGATAATGAGTGGTTCTTCTTCTCTCCCCGT GGAAGGAAGTACCCGAATGGTTCTCAAAGTAAAAGAGCAACTGAATGTGGCTATTGGAAGGCCACTGGGAAAGAGCGCAA TGTGAAATCAGGCTCTAACGTTATAGGCACAAAGCGGACTCTGGTATTCCACTTGGGGCGTGCACCGAAAGGAGAGAGGA CCGAATGGATCATGCACGAGTACTGCATCAATGACAAGTCTCAGGATTCTTTGGTGGTTTGTCGCCTTAAGAGGAACACA GAGTTCCGTTTGAGCGATGCTTCAAATAGAGCTTCTTCAAGTCAAATCCAACCAGTGCATTCACATGAAAGCTCAGATGG AGGGATTGATCAAAGTCAAAGGGGTCTGGGTGAGGGTGCGCAAGACAAAGAGGTTGGGTGCAGCTCCAAGCGGAGCAGCA GCAGTTATGGTTCGGAACAAATTGAATCTGTATCTGAATCGAATCAACGTCCAGCTAATGACGGTCATTTGACTGAATCT TCTGGTCACCTAAAGGAAGTAGATGAAGAGGATTGTTATGCTGAGATACTGAAGAATGATATCATCAAATTAGATGAATC CTCAATCTCGAAAGCCGGTCACACAATACCAGAGGACCCTGCACAGTTGGATAACTACCAAGGCACAGCGCAACGAAGGA TAAGATTAAGGGTTAAAAGGCCAAGGCGTTCTGCTGAAGGAGCTCGTTGCTCGAGCAAAATGCACTCATCCAAGAGTAGC TTCTTTGCCAGAATTACCACCAGATTGGTGGTGGTATTTGCTTTCTTGGTTTTCACTTTGGTAGGTGTATGTTTTTGGTC TTCATTTGGTACTTGGTCACGAACAAGTGAAATTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0180600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELVSREVPLSMATPSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVEICKYEPWDLPAMSFIQSDNEWFFFSPR GRKYPNGSQSKRATECGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVVCRLKRNT EFRLSDASNRASSSQIQPVHSHESSDGGIDQSQRGLGEGAQDKEVGCSSKRSSSSYGSEQIESVSESNQRPANDGHLTES SGHLKEVDEEDCYAEILKNDIIKLDESSISKAGHTIPEDPAQLDNYQGTAQRRIRLRVKRPRRSAEGARCSSKMHSSKSS FFARITTRLVVVFAFLVFTLVGVCFWSSFGTWSRTSEI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 328 328 - –
SUPERFAMILY
SSF101941
6 158 153 1.05E-56
IPR036093
PANTHER
PTHR31989
11 278 268 9.2E-110 –
PANTHER
PTHR31989:SF236
11 278 268 9.2E-110 –
ProSiteProfiles
PS51005
17 159 143 53.913
IPR003441
Pfam
PF02365
19 142 124 2.3E-35
IPR003441
Gene3D
G3DSA:3.30.310.150
26 172 147 5.3E-53
IPR036093
MobiDBLite
mobidb-lite
165 244 80 - –
MobiDBLite
mobidb-lite
165 191 27 - –
MobiDBLite
mobidb-lite
206 236 31 - –
Phobius
TRANSMEMBRANE
329 349 21 - –
TMHMM
TMhelix
330 352 23 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
350 358 9 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0180600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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