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LotjaGi3g1v0180600.2

Overview

Field Value
Gene ID LotjaGi3g1v0180600
Transcript ID LotjaGi3g1v0180600.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description NAC domain protein,; TAIR: AT2G27300.1 NTM1-like 8; Swiss-Prot: sp|Q9XIN7|NAC40_ARATH NAC domain-containing protein 40; TrEMBL-Plants: tr|G7IHH0|G7IHH0_MEDTR NAC transcription factor-like protein; Found in the gene: LotjaGi3g1v0180600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:25129675..25132936) extracted from Lotus japonicus Gifu genome v1.2.

AAAGCACAAGCACGTGAGGTGATAACATGGGCATGCCACATCGGAACCTTATTAACACAACACTTCATCTGCTACCGACT TTGTCTGTCTCAACATAAATACTCTTCCCCCACGCCACCACCACCTGACCCACCTTGCTTGCCGCACACAAGCAAGCAAA GCACCAAAATCACAAAACCAACGAAAGGAATCAGAATTCAATTCCTCACCACCTTAAACCCTTGATTAATTCTTCATATT TTTGTGTTTGTTTTTGAAAAACAGAGGAGGGTTGTTAGAGTTTTTGATCATGGAATTGGTTTCCAGAGAAGTGCCCTTGT CAATGGCTACCCCCTCCATGTTTCCAGGGTTCAGATTCTGCCCCACAGACGAGGAGTTGATTTCTTATTACCTCAGGAAG AAGCTTGATGGCCATGAAGAGAGTGTTCAGGTCATTTCTGAGGTTGAAATTTGTAAATATGAGCCATGGGATTTACCAGG TTACTCTCTTTTTCCTTTTCCTTTTCTGGGTGTTTCTTTTTTGAATTGAATTCTATTTCTATTTGGGTCTTCACTTTGAA TGTCAAAATTGAAACTTTGCTACCTGCTTGTCTCTTTCAATTGGAATCTTGTTCTACTAGCTCATGTGATGTGATGCCTG TGAGTTTATTTCATTTTGATTGAATCATGTGTGTGTAGGTAGGTGGGACCGTGGGAGCTTATGTAAATGTAAGTGGGTCA TCATCATGTATAAACAGGGCTCTTTGAATTTTTAGATTCTCTTATTTTTTTACACTGCTTTATTCTCATGTTTCTATAGC ATCATGTTGATACCTTGTGTAAAAGTCACACCTCTGTGGCTCTGTTTTCCATACATGAGAAGAATCAATTTCTTGCACTG TGAAAATTGCGTTGGATTTTTTGATATACACATCCAATATTTTGATTCTCCTAGTGCCCCCTAAGCTTACAGCTTGTTTG GACATTTGGGTTCTTTTTTAAATTGAAGATGTTTGTGTAGTAGTACTAGCTGAAAAATGAAAAATGTCAAATGCATTCAG CTCATGGCTGTTACTGAATTCAACAGTGAATTTTTTATTTAAATAGTTCAATAACAAGAAAATTTTCTTGTATAGAGCCA GTGTTATTATATTAAATGATAATTTTCCTTAGAGGAACCTTATGATAAAATATGATTCAGCTTTGAACAACTAGTGTGTG TAATGATACTATTGGAAGCATAATTTTTGTGACTGGTTGGACATTCATGCAACATGTATCTCAATTCTTGACTTGTTTCT TGTTAAAAGTAAAAACAGAACATATGGAAAGAAACTAATGTCTGTATCTTGTGTTGACACTTGACAATGAAATATGTGAA ATGAAATGTATTAGTTGTCCAATCTTACTTATTCATTCTCTTAGATATCCATTTTTTAACTTTGTGAAAGTTTAAACTTG GCACTAATTGAAACACTGACCTGTTAGCACTTATTTGAAAGCAGCAATGTCGTTCATTCAATCAGATAATGAGTGGTTCT TCTTCTCTCCCCGTGGAAGGAAGTACCCGAATGGTTCTCAAAGTAAAAGAGCAACTGAATGTGGCTATTGGAAGGCCACT GGGAAAGAGCGCAATGTGAAATCAGGCTCTAACGTTATAGGCACAAAGCGGACTCTGGTATTCCACTTGGGGCGTGCACC GAAAGGAGAGAGGACCGAATGGATCATGCACGAGTACTGCATCAATGACAAGTCTCAGGTGAGTAATCACTAATCAGTGT TCTTCCTGTATAACAAGGTTGATTCAAGCATCCTATGTTTTATGTTATGTAACTGTAAATAAGTTATGTTTGGATCAATT TCTTTTTGTTCTGAATCAATTCTAAAACCAAGAAGATCATTTCAAATCAATTCTAGAAGGATTTCCAATCGTGTGTTAAT TCTAACATGTTTGTATTGACATCTCTTTCCAGAAATTCTACCACCCAGATGCTACTACAGAAGTTCCTACCCATAATTGA TTTTGGTTTTAAAATTAATTGTAGAAGGATTTCCTAACATGCACTTAATGTTATGTTTCAGGATTCTTTGGTGGTTTGTC GCCTTAAGAGGAACACAGAGTTCCGTTTGAGCGATGCTTCAAATAGAGCTTCTTCAAGTCAAATCCAACCAGTGCATTCA CATGAAAGCTCAGATGGAGGGATTGATCAAAGTCAAAGGGGTCTGGGTGAGGGTGCGCAAGACAAAGAGGTTGGGTGCAG CTCCAAGCGGAGCAGCAGCAGTTATGGTTCGGAACAAATTGAATCTGTATCTGAATCGAATCAACGTCCAGCTAATGACG GTCATTTGACTGAATCTTCTGGTCACCTAAAGGTAGCAGCCATAATAATCTATATATGTTACTAGATTGGATGAAATTGA GTGGTTCTAAATAACACAGTTGTTGTTGGTATAGGAAGTAGATGAAGAGGATTGTTATGCTGAGATACTGAAGAATGATA TCATCAAATTAGATGAATCCTCAATCTCGAAAGCCGGTCACACAATACCAGAGGACCCTGCACAGTTGGATAACTACCAA GGCACAGCGCAACGAAGGATAAGATTAAGGGTTAAAAGGCCAAGGCGTTCTGCTGAAGGAGCTCGTTGCTCGAGCAAAAT GCACTCATCCAAGAGTAGCTTCTTTGCCAGAATTACCACCAGATTGGTGGTGGTATTTGCTTTCTTGGTTTTCACTTTGG TAGGTGTATGTTTTTGGTCTTCATTTGGTACTTGGTCACGAACAAGTGAAATTTAGTGGCGTAATTATTATTAGCCCTTC TTCTATGCTGTGCTATGCAAGTGTAGGGAAGGTTAAACCTGTTCCTTTAGAATTTGATGCATTAATTAGGCTTTGAGATT TTTTGTATGCAAATGAATGGTGATCTCCTCTGCGCCATGAGAATATGCAGTGAGCTTTGGGATGGATGGAATCTCATAAG TGTATCCTTCCGATCAAAGATGACCTGGGCTGAGATACCCACCTGAAAAGGCCCAATTCAGCCCTAGCCTGATCCAAAAG TTATGTTCTATATGTGGTTTAAATAGAAAGTTGAAATGTTTATTATAAAAAAAATCAGAAGCCTGTGACAAACAAGTTGT AGAAATGTAGAATAGAAAAAAGAAATGATGAGAGATAGTATGTTTGATTTTTTGATTTTACTATAAAGGTTGATTAGAAA GTAGTGACCAATTAAAGAGTTTCTTTGACATCTATCTTCATTGACCCATTTGGCAAGTTGAC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0180600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAATTGGTTTCCAGAGAAGTGCCCTTGTCAATGGCTACCCCCTCCATGTTTCCAGGGTTCAGATTCTGCCCCACAGA CGAGGAGTTGATTTCTTATTACCTCAGGAAGAAGCTTGATGGCCATGAAGAGAGTGTTCAGGTCATTTCTGAGGTTGAAA TTTGTAAATATGAGCCATGGGATTTACCAGGTAGGTGGGACCGTGGGAGCTTATGTAAATCAATGTCGTTCATTCAATCA GATAATGAGTGGTTCTTCTTCTCTCCCCGTGGAAGGAAGTACCCGAATGGTTCTCAAAGTAAAAGAGCAACTGAATGTGG CTATTGGAAGGCCACTGGGAAAGAGCGCAATGTGAAATCAGGCTCTAACGTTATAGGCACAAAGCGGACTCTGGTATTCC ACTTGGGGCGTGCACCGAAAGGAGAGAGGACCGAATGGATCATGCACGAGTACTGCATCAATGACAAGTCTCAGGATTCT TTGGTGGTTTGTCGCCTTAAGAGGAACACAGAGTTCCGTTTGAGCGATGCTTCAAATAGAGCTTCTTCAAGTCAAATCCA ACCAGTGCATTCACATGAAAGCTCAGATGGAGGGATTGATCAAAGTCAAAGGGGTCTGGGTGAGGGTGCGCAAGACAAAG AGGTTGGGTGCAGCTCCAAGCGGAGCAGCAGCAGTTATGGTTCGGAACAAATTGAATCTGTATCTGAATCGAATCAACGT CCAGCTAATGACGGTCATTTGACTGAATCTTCTGGTCACCTAAAGGAAGTAGATGAAGAGGATTGTTATGCTGAGATACT GAAGAATGATATCATCAAATTAGATGAATCCTCAATCTCGAAAGCCGGTCACACAATACCAGAGGACCCTGCACAGTTGG ATAACTACCAAGGCACAGCGCAACGAAGGATAAGATTAAGGGTTAAAAGGCCAAGGCGTTCTGCTGAAGGAGCTCGTTGC TCGAGCAAAATGCACTCATCCAAGAGTAGCTTCTTTGCCAGAATTACCACCAGATTGGTGGTGGTATTTGCTTTCTTGGT TTTCACTTTGGTAGGTGTATGTTTTTGGTCTTCATTTGGTACTTGGTCACGAACAAGTGAAATTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0180600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELVSREVPLSMATPSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVEICKYEPWDLPGRWDRGSLCKSMSFIQS DNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDS LVVCRLKRNTEFRLSDASNRASSSQIQPVHSHESSDGGIDQSQRGLGEGAQDKEVGCSSKRSSSSYGSEQIESVSESNQR PANDGHLTESSGHLKEVDEEDCYAEILKNDIIKLDESSISKAGHTIPEDPAQLDNYQGTAQRRIRLRVKRPRRSAEGARC SSKMHSSKSSFFARITTRLVVVFAFLVFTLVGVCFWSSFGTWSRTSEI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 338 338 - –
SUPERFAMILY
SSF101941
6 168 163 1.57E-54
IPR036093
PANTHER
PTHR31989:SF236
11 288 278 1.6E-105 –
PANTHER
PTHR31989
11 288 278 1.6E-105 –
ProSiteProfiles
PS51005
17 169 153 52.707
IPR003441
Pfam
PF02365
19 152 134 9.5E-35
IPR003441
Gene3D
G3DSA:3.30.310.150
26 182 157 3.7E-51
IPR036093
MobiDBLite
mobidb-lite
175 254 80 - –
MobiDBLite
mobidb-lite
175 201 27 - –
MobiDBLite
mobidb-lite
216 246 31 - –
Phobius
TRANSMEMBRANE
339 359 21 - –
TMHMM
TMhelix
340 362 23 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
360 368 9 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0180600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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