Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0183900 |
| Transcript ID | LotjaGi3g1v0183900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; TAIR: AT5G22070.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|P08641|CADH1_CHICK Cadherin-1; TrEMBL-Plants: tr|A0A0L9TAA9|A0A0L9TAA9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0183900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:25760374..25763972) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAATTCCTTAAACAAACAAAGAAATTAAACGCCCTTCCATGTACAGTAACATCCAGAAGTTACAGTCTCCACCGTCA AACCCATATCAACTTGTAGATGTTTTTATTTATAAAATTTAAAAAGGACCTGAAAAGTCGAAAATACCCCGTACCCACTA CCCTTCACCTTCAATCATCATCTTCATCTTCATCTTCATCTTCTTCTTCTTCCTCAAACCAAATCCAAATCTATTTCCCT CTCTCTGAACCAAACCAGAAAAACCATTCCCAAATCTCAAACCCTAACCCTAGAAAACCCTATGTACCATTGACACAACC ACCACAATTCCAGACCACCACCACCACCACCACCATTCTCATTCCTCGCCGCGAGTGGTGGTAAAAACCCCTCAATTACC AAGAATCTCCATGTTCTCCTCCCCCTACCTCCTCACTTTCTCCCTCCTCCTCTCTCTCCCCATCCTCTTCTTCCTCGCCC CTCGCATCCTCCCTCCTCACCCTCACTCCCTCCCCATTCCCCCCTCCGATGAACTCGACGACGTTAACCTCTTCAACCGC GCCACCTCCTCCTCCTCCCACCCTTCCTCTTCCTCCACCACCAACCCTTCCAAATTCTTCCATCTCTCTTCCAAGAAGAA ACCCACCCTCAAAATCGCCTTCCTCTTCCTCACCAACACCGATCTCCATTTCTTCCCCTTATGGGAGCTTTTCTTCAAGG ATCAACCCACCAATCTCTTCAATATCTACGTCCATGCCGACCCTTCATCCAACGTCACGCGCCCTGAAAACCCCCTTTTC AAATTCATCCCTTCAAAACGAACCTACCGTGCCTCACCCACTCTCATCTCCGCCACGCGCCGCCTACTCGCCACCGCGAT CCTCGACGACCCGGCGAACACCTACTTCGCTGTTCTCTCACAATACTGCATCCCTCTGCACTCGTTTTCCTACATCTACC ATTCTCTCTTCGTCTCACCCACCTTCGATTTGACCGATCCGGAGTCGACCCACTTCGGGGTTCGCCTCAGGTATAAGAGC TTCGTTGAGATCATCTCCAATGGGCCGGAGCTATGGAAGCGTTACGTTGCCAGGGGTCGCTATGCGATGATGCCGGAGGT GCCATTCAACAGGTTCCGCGTTGGATCGCAATTCTTCACGCTCACGAGGAAGCATGCTTTGGTTGTTGTGAAGGATAGGA CGCTGTGGAGGAAATTCAAGGTGCCATGTTACCGTGATGATGAGTGTTACCCTGAGGAGCATTATTTTCCCACGTTGTTG TCAATGGCGGATCCTGATGGATGCACCAAGTACACGCTTACTAGTGTCAATTGGACCGGGACTGTCAATGGCCACCCTCA TACCTATCGACCGGCCGAGGTGAAGCCGGAGTTGATACAAGAGTTGCGGCCGTCGAAACACTCGGAGTCTTATTTGTTTG CTAGGAAATTCACCCCAGATTGCTTGGAGCCCTTGATGAACATTGCTAAATCTGTCATTTTCAAGGATTGAACAAAAAGT ATCAAATTGGTAAGTTTTTTTTTTTCCTTTCTGTGTTCATCAATTTTTTAGTGTGATTTTGGTTTGCATTGGATGCAGTG AGTTGTGTTATGTGATTCATGGAAAAAGTTAGGAACTTAACTGACATCAAATTTGTTTGTAGCTTTCTATGTTAGGATCT GGGCATTTGATGCCTTTTTGATATGTGAATTTCTTCAAGTTTTTCATTTTGTTTGCATTCTCAAAATATTCCTGGTTTTG TTTACTTGCTTACTTGTTAGTTGGAACTTGGAATCAAAGCTAATTTTAGACTGACATTTGAGGGCTGTGGAATTTGGAAG GACTTTGAATTGCTTTTTAATATGTCATGTGTCTGAATGGATTTGTTCTTTCTTGTGAATGGGGTCTCTTGCTGTTTATG GAGCGTATAATTGCTTTTTGCATTTGTGGTGTTTGTGCTTTTGTGATGAGAAAAAGGTTTATGGCATCTTCTATTCTGAA TGTCAAAAGTCATGCTAGTAGTTGGTGCTTTTATATGGTTGGGAGCCTGATAATCACTTATGCTGAGAAGCTAAGGTACC GTGGTTTGGATTGTATGTCCACGGTCAATCCAAACACATATTCTTTATGATGTAAACTAGAGTGGATGATCAATATTTGG GCAAGCCTAACCTAAAGCATTATGCATAAGGCATTTCCTATCTGCCTTTTGAAGATATTTTCTTGATTGTTTCTGTTTGT TAGTTTGCTCTTATTTCCTCACAGCACTTGCCAATCCTGCTGTGTTTCAAATTTTTTTTATCAACTTCTGTATGAGACTG CAGTTGAAATAACTTGTTCAATCAAAATTTGTTCTTGCAGGCGGAAAATGTCAGCAAAGAGATTAATGGCAAGTTGATGC TTGCTGTTGCTGTGGGGTATATAGTTTGAAGAGATTTGAACAGCTCACACTCTATATAACCTGGAACTCTCAGATAGAGA GGCTCCATATTTACACGAATGAGGAACCGAAATAGAAAACAGAGAAATAGATAGACACCTGCATGAGTGGAAAAAGAAAG ACAGGTGCGTTAGTCAAGTGTATTATTTCATTTGGTGCAAGTTCTCAAGTAATTTGCCTTAGAAGATTGTGTAGGTAGTT TTGTCTTTTGTGAGATGTTTTTTTGTGTGTACATATACGAGTCTTGTAACAACATTAGTAAAGAGCTCTACAATGTTTAC CACTTTGGGATAAAACATGAGCTGTTGCCTAAACATGAGGCAACAGTGACTGTAATATTAAAAAAAGATCTGGTCACATT TGGCCAATTCAATTTCTTCTCCATTCGGCTATTGGATATCCTTTTGCAAATTCTTATTCTGTTTCCTGATTCCTTTGGTG TTTGGCCCTACTTTTTCTTTTGTTCTTTCTGTGCATTTCTATTAGTCTGTTCTGTGATCCCTTTCTTCCGTGGAAAGTAT ATGACAGTGCTTTATTTTCATTGTGCTAGTGCATGTTTGGGATATCCTTCTAAAATTGATTATCGGGAGAACTTTTCTGA GTAACTTAACTTCTGGGTTTCAGAATTAATTTTGAGGAAAATTAAGTTAATCTAAACATGGAAGCAGCAAGCTAATAACA CAGTTAACTGTTTAAAATTATGGGACACTTCAATCAAGTGTATGTTTGGAAATCACTCTACTAGCATCTTTGGATCATCA TTCCTTTCCCCAGAATTAATTTTGAAACACAGAAGTTATTCATGTAAGTTTTACCCTATAATTGATTCTGTTGTATCAAA TTGTAGAAGAGATTCCAGACATACATTACAATTGATTCTGACAGCGAGAGCTCAGTGAGTAGTTTATGATCTAAGAATTG AATCTAAGAAGCTTCTTGAGACTTGGTGGCAAAAAAATAAAAGCATCTTGTAGCTTCAAACAAGTGTCTGGTTTTCTATA TTGTGTTTGGTTACTTTCATTGGTCAAAATCATCTTTGAAGGCCTAGGAATGATTTTGGTTTCAAAATCAATTTTATGGA TCATTTACAGAGAATAGTTTCTGCTGCAATTAGGGATGGCAGAGAAGCCCGAACCCATGGGCACCCGACCCGACCCGAC
CDS sequence (LotjaGi3g1v0183900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCCTCCCCCTACCTCCTCACTTTCTCCCTCCTCCTCTCTCTCCCCATCCTCTTCTTCCTCGCCCCTCGCATCCT CCCTCCTCACCCTCACTCCCTCCCCATTCCCCCCTCCGATGAACTCGACGACGTTAACCTCTTCAACCGCGCCACCTCCT CCTCCTCCCACCCTTCCTCTTCCTCCACCACCAACCCTTCCAAATTCTTCCATCTCTCTTCCAAGAAGAAACCCACCCTC AAAATCGCCTTCCTCTTCCTCACCAACACCGATCTCCATTTCTTCCCCTTATGGGAGCTTTTCTTCAAGGATCAACCCAC CAATCTCTTCAATATCTACGTCCATGCCGACCCTTCATCCAACGTCACGCGCCCTGAAAACCCCCTTTTCAAATTCATCC CTTCAAAACGAACCTACCGTGCCTCACCCACTCTCATCTCCGCCACGCGCCGCCTACTCGCCACCGCGATCCTCGACGAC CCGGCGAACACCTACTTCGCTGTTCTCTCACAATACTGCATCCCTCTGCACTCGTTTTCCTACATCTACCATTCTCTCTT CGTCTCACCCACCTTCGATTTGACCGATCCGGAGTCGACCCACTTCGGGGTTCGCCTCAGGTATAAGAGCTTCGTTGAGA TCATCTCCAATGGGCCGGAGCTATGGAAGCGTTACGTTGCCAGGGGTCGCTATGCGATGATGCCGGAGGTGCCATTCAAC AGGTTCCGCGTTGGATCGCAATTCTTCACGCTCACGAGGAAGCATGCTTTGGTTGTTGTGAAGGATAGGACGCTGTGGAG GAAATTCAAGGTGCCATGTTACCGTGATGATGAGTGTTACCCTGAGGAGCATTATTTTCCCACGTTGTTGTCAATGGCGG ATCCTGATGGATGCACCAAGTACACGCTTACTAGTGTCAATTGGACCGGGACTGTCAATGGCCACCCTCATACCTATCGA CCGGCCGAGGTGAAGCCGGAGTTGATACAAGAGTTGCGGCCGTCGAAACACTCGGAGTCTTATTTGTTTGCTAGGAAATT CACCCCAGATTGCTTGGAGCCCTTGATGAACATTGCTAAATCTGTCATTTTCAAGGATTGA
Protein sequence (LotjaGi3g1v0183900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSSPYLLTFSLLLSLPILFFLAPRILPPHPHSLPIPPSDELDDVNLFNRATSSSSHPSSSSTTNPSKFFHLSSKKKPTL KIAFLFLTNTDLHFFPLWELFFKDQPTNLFNIYVHADPSSNVTRPENPLFKFIPSKRTYRASPTLISATRRLLATAILDD PANTYFAVLSQYCIPLHSFSYIYHSLFVSPTFDLTDPESTHFGVRLRYKSFVEIISNGPELWKRYVARGRYAMMPEVPFN RFRVGSQFFTLTRKHALVVVKDRTLWRKFKVPCYRDDECYPEEHYFPTLLSMADPDGCTKYTLTSVNWTGTVNGHPHTYR PAEVKPELIQELRPSKHSESYLFARKFTPDCLEPLMNIAKSVIFKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 365 | 365 | 8.9E-168 | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 365 | 365 | 8.9E-168 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 7 | 20 | 14 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 366 | 341 | - | – | |
| Pfam | 82 | 332 | 251 | 5.5E-58 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0183900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…