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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0188200 |
Transcript ID | LotjaGi3g1v0188200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Autophagy-related protein; TAIR: AT2G05630.1 Ubiquitin-like superfamily protein; Swiss-Prot: sp|A2YS06|ATG8C_ORYSI Autophagy-related protein 8C; TrEMBL-Plants: tr|B7FH53|B7FH53_MEDTR Autophagy-related protein; Found in the gene: LotjaGi3g1v0188200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:26840638..26843099) extracted from Lotus japonicus Gifu genome v1.2.
ACTTGACAGCAAAATTCGGATAACAATATTAAAAAAATCTCATTTGTATTTGTGAAGGATAATTTAATTTATTAGCAAAA GGACAAAAGTTTAAAGAGGGTGTCGTTGCGTTGGGGTTTCTCTGTTTCCCAATTCTCAAGTGAACAAAAGAGGGATTTCT TTGCTTCGAGGGATCTCTATCCTCTCTCCAATTTGGTAAGCGATCTCTCATTTTCCTTTTTCATACCCAAATTTCTTTCT CTGATTTTGTTTCTTAATTCAATTCAATTCAATTCGTTTCGTTGCTTGATTGATTGATTGCTTCCCTCGGAAGCAAACCC TAACTCCTAAATTAGGATTTTGCAGAATTTTTGTCATGGCTAAGAGTTCATTCAAGATGGAACACCCTCTTGGTTCGTTT TCTTCCGCTCTTCTGTTTCCCCAATTTTCCTTATTCTGGGTAACGCTGGATAGTTTATTTGATGCTACAAGTCCTAATTT ATGCTTGGGGTTTGAATTTTATGTTATCGGTGTAATTTGACAGTTTAGTTTTTTAATTTTCTAGAAAAGAGGGTCTGTGA AAAATTGGGTCTTGTGGATCATGATCATAATCTGAACTCTGGTCCCTAAAGTTGGAAATTTGGCCATAAAATATTATTTT GTGCAATTTGTTTTATTTGTTTTTAGACTACATTTAGAACCTTAGCTATGTAGCTTAATTCTGCATTGTTTCTTTTGCTT TAGCAGTGCTGCTAGTTGGTTAATCTGATTTGATACATCCTGTGAATCGGGGTCAGTTTGTGGTGTGAGTTATAACATTG GTTTTTTCTTGACAGGTGGTCTGATTCGTTTCTTATCATGTTACAAAACATGTATTAAACATCATTCCTAAGTGCAGTTA AACTTGCATTTTCTTATCAGTTACTACCAACTTATGTTCTCTGATTTGTACTCCATATTTTATTTTTTGTGCCAGAAAGG AGGCAGGCTGAAGCAGCACGGATAAGGGAAAAGTATCCTGATAGAATTCCAGTAAGATTTTTCTTTTTATATGCCCCTTG TTTTATGTCATGTTAGTCTCACTTTTTGATTTTTAATTTGGTTGATCTTTTGGGTGTAGGTGATTGTTGAAAGGGCTGAG AAGAGTGATGTTCCTGATATTGATAAGAAAAAGTTAGTTTCTTCTATTTCTTGTACAGAGAAATTATGTTATTTCCCTAT TTGATAATTATTTTTTGTATTAAGTTTATAATGCTTCACCTGGCTGAAGTTTTGATGTTAGATAGGTTTTTAATTGAAGT TTGAGACATTTTTACTTGAACTTATGCCATTGTGGTCATGTTTTTGTTGGGGTTTTGACTGGAATGTGTGTTTGGAGACT GCTAAGTTTGTTTAGGTTTCTGTTTGTGTTTTTGGCATCGATCAGAATTGTTCCTGAGTCCTGTGACCTAGCAAACCTTG TGGTTCTAATTTCATTTGGTTGCATTGTTAAGGGTAGAAGTTAGACAGACGAACTCTTGATTAATTTTAACATGGTGAAC AGAGCCTGAAGCCTTTCTTCTATCATGTGCTTAATCATGCTCAGTAACATAAGAGACCCTATTACAAACTGAATTGGAAA AAAGCCAAAATCACTGCTAAGCTTAATTATATTGTAGATGCTTTTTATGGTTTCATTCATGTGAAATCCCACTACAAGAT TTCATCATTGGAAGATTTAAAACCTGCCTAGTTTGATCAACATTACAAGAAGGGTTTTGTTTTAGGCTTCACTGATAACA ACTGATTGTAAATGTTGTCATCCTGTCTGTTGATGGAGTGAAGTTACTTATATCTGCAGTCTGTGTTCTGTTTGGATTTG CATGTGCTTATTATTTTTTTCCTCTCCAACAGTTCTTTTGATTTGTGTGGTCTTCATTATAATAACATTTAGTAGATTGA ATGACTCATGGTGTATATTATTCTTCCCTGCTGGATGATTTTAGGTATCTTGTTCCTGCTGATCTAACCGTAGGCCAGTT CGTGTATGTGGTGCGAAAGAGAATCAAACTGAGTCCTGAGAAGGCTATCTTCATTTTTGTGAAGAACATTTTACCGCCAA CAGGTAATATAGATGGACTATTATTGTTTTATGGTGGTAAATTTTGTTGTTGATTTTGTGAATTGAGTTGTTGATTTCTG TTTATGCAGCTGCTATGATGTCTGCAATATATGAGGAAAATAAGGATGAAGATGGATTCCTGTATATGACTTACAGCGGG GAGAACACGTTTGGGTTGTTAATGTGAAACATTGACAAGCTGCAACCATGTGAATAGAACTTAATATCCTATGGGAAATA GTCAGTTTAGTGGTAAATTCTGTCGTTTGATTAATTTATATTGAAGTTTATGATCTCTGATCCATGACAGTCAATCTTGA TGAACTCTGCAACTGGTTGAAACTTATCTTGCGTTTTAATCTAAATTGCTAATAGATCAAGT
CDS sequence (LotjaGi3g1v0188200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAAGAGTTCATTCAAGATGGAACACCCTCTTGAAAGGAGGCAGGCTGAAGCAGCACGGATAAGGGAAAAGTATCC TGATAGAATTCCAGTGATTGTTGAAAGGGCTGAGAAGAGTGATGTTCCTGATATTGATAAGAAAAAGTATCTTGTTCCTG CTGATCTAACCGTAGGCCAGTTCGTGTATGTGGTGCGAAAGAGAATCAAACTGAGTCCTGAGAAGGCTATCTTCATTTTT GTGAAGAACATTTTACCGCCAACAGCTGCTATGATGTCTGCAATATATGAGGAAAATAAGGATGAAGATGGATTCCTGTA TATGACTTACAGCGGGGAGAACACGTTTGGGTTGTTAATGTGA
Protein sequence (LotjaGi3g1v0188200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIF VKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGLLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 117 | 117 | 1.2E-61 | – | |
PANTHER | 1 | 118 | 118 | 8.6E-80 | – | |
Phobius | 1 | 75 | 75 | - | – | |
PANTHER | 1 | 118 | 118 | 8.6E-80 | ||
SUPERFAMILY | 3 | 117 | 115 | 1.29E-44 | ||
CDD | 12 | 114 | 103 | 1.16488E-72 | – | |
Pfam | 14 | 117 | 104 | 5.5E-52 | ||
Phobius | 76 | 96 | 21 | - | – | |
Phobius | 97 | 120 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0188200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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