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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0190900 |
| Transcript ID | LotjaGi3g1v0190900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | APO protein; TAIR: AT3G21740.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial; TrEMBL-Plants: tr|K7M2V5|K7M2V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0190900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27647645..27651069) extracted from Lotus japonicus Gifu genome v1.2.
CTGTGTAGTAAACCAGCACAACAAAAACCCTGAGGAGCTACACCGTCTCCGACACTGTACGAGGTCGGTGAGTGCCAATT TGTACTGGATTTTCGCGACAACAACATTTGATTGATGAAATGCCCCTTTGCCAATTCCAAATCTCTCGTTTCACTTGCAG GTTTTTTCAATGGCTTTGAGGAATAAGATTCCATGGTGGCACGGCGTTGCTGCTCTGTTCGGAGAATCCTATCGCCGGTG TTACGCCACCAGCAGCAAAGTGGACCTGAAGAAACTCCGCCCCATGATTCTCAAAAGAATCGAGAAACGCTCCCAACTTT ACCCCATTCCCTCCATGATTCCCGTTGCCAACGAGGTTCTCCTCTCTAGGAATGTTCTCATCCATGGCGTTTCCACCCTC CTCAATCACTTCCCTCTCATGTCTTGCAAGTCAGTGTTCTTTTTCTTTGAATGTTCTGAATTTAATCCTATATCATTAGT CATTCTCTAAAATCACTGTATTTGAGTTTTTATTGGTGATGTTTTATATTGAAGACATAAAGAGCAAGTAGGGAATTAGG GATTGATTGAATTGAAATTATCTTCACCTTTAAAGAACAAATTGAAAATGAATATTAAGAGATTTGGGTGCTCTTTTCCA TTAGCTTCTTCTGCTTTGACATTACATGAAGTAGCTAGTCACTCATGAGCACTGGATATGTTTTGATCATTGTATATTTT TTTTCGTTCGAATGTCCATTTAGATATTAAATGATGGAGGAAAGAAAAGTGGGATTTTCTTGGTGAATGCAAAGAAGATT GGAAACATTAGCTTGTTTTAACATAAGTGAGCAAACACTTTTGCTTGTTACCGGTGCTTATAATTTATAAATGTTGAATG TTAAAATAAACCATGAGACAAACACTTCTACTTAAAATGCCAAAGTTTTTATTAAGAGTATTTTTCTGGTTTCTTATCTT TAGGAGTTACTACCATTTACTCGTTGTCAATTATTATTGTAAGGAATAATGTTTGAACCGTGTGATCATTAGGAAATTTG TATTTTACTTGGACTTGTTGTCTTCCCATTTTTGTAAGCTCAAGTTGTTGAAACTTGAAAACATTATATGCTTATCTACT CTTATTATGTATTTACAGATTCTGTCCAGAGATATATATTGGTGAGAAGGGGCATTTAATTCAGACTTGCCGGGGTTACA AGCATCGTGCCAAGCATCAGGTTCATGAATGGGTCCAAGGTGGTTTGAATGATATACTTGTTCCTGTTGAAACATTTCAC TTGAAGAACATGTTCCAAAGTGTTATTAGGCATAATCAAAGGTTTGACTTTGATCGCATCCCTGCTGTTGTTGAGCTATG CTGGCAAGCCGGGGCTGATCCCCATGATGAAAACCTTAATTCAAGTAATTGGAACTTGGAGGATGCAAATGGCATTGTTG ATGGAACTGAGTCCTTGTCACCAAGTGATCTTGCCTCTATAGCAAATAAAACTGTCAATGCTTGGGAGACTCTCAGGTCT GGGGTGGAGAAGTTGTTGTTGGTTTATCCGGCAAAAGTTTGTAAATATTGTTCTGAGGTGCATGTTGGGCCGTCTGGCCA TAAAGCTAGGCTCTGTGGAGTGTTTAAGTATGAAAGTTGGAAAGGAACTCACTTTTGGACAAAAGCTAATGTGGATAATT TAGTGCCACCAAAGATTGTATGGAAACGAAGACCTCAAGATCCTCCTGTACTTTTGAATGCAGGGAGAAACTTCTATGGG CGTCTTCCAGCTGTATTGGATCTGTGCACAATAGCTGGTGCTATTGTGCCTGCTAAGTATAATATTATGATGAAAGTGCA AGGTATGTCTGGCCCTGCTAATAATAAGATCTGGACGGGCATTAGATAAACAAACTTATGCAAGCAACTGTGAGTTGAAT GCTGATCCGGCACTCAATCAGGGAATGTCTGGAGAAGAAATCTGACTTGTCATTACTTTCATCTACGATTTTCTGCATAA TTTTAAGGTTGTCTTGTTTGACATCATATCTGATTATAAATCCATATTCCTATTCTTGTGTTACTTACAGCAAGAAGTAT TGTTTCCATATCTCATTTTCCTAAATATTTATGCAGAGCTATGAAAATCTCAGACATATATATGTGGCTGGACTTGATGG CGATGGACCCGCTCCTCAGGTTGCACAAAGGTAATCTAATGTTCTACTTCTCCAGTCAAAGATCCCAGTTTTCAGTTTTG ATTATTTTTGTAAACCTTGTGGAATCATTAGTCCTATAATTGCTTGAAATATTGACACAAGAGATACTGCGTCTGTTGTT GTACATATCTGTAGCAAGTTCATCCCTGCCAAAACAGGGGGCAGTTTATCTCAGAAATTTCATTTTTCTTGACGTATCAC ATGAATAGAAGCTCTGCTTTATTTTCTATCAATTATTAAGTTTGTGAATTTGGAATATCTAAAGAATGAGGTAGAGGAAA AAGTATGGGATTATAAATGTTCATTGAAAAATATATAGAAAAGATTCTGATAAAATAAATACAAATCTTAACAAACAATG AAGTTATTAAAATCTACTCTAACAAACAATTTAAGTGATTAAATTCTGCTCTGAGTTTTCCAGTCAATAGTTACAACTTA CAAACACTGCACTTTTCTCTTTATAGTACATCTTTTGCTTTAGAAAAACCAAGTCTCTAGTTTGTAGGCATGCTTTTGGC TTTTTTACTTGCAGACGGTGGTTTATTATCGAATATGGATAAATAGATTGCAGACGTTGTTTCATTGTGCATAAGTTCTT TCTACAAATAAAACTGCTTGAAGTCTGAACCAAATCCTTGAGATAAGAAAGAAAATGATTTGGTGATTGGCTTTTATTGT TAGCCAAGGATAATGTAATTAACCTTGTTTGCATTGTCTAATGTAACAACCAATTTGGTGAAGGAAAGAGAGAACTAGGG ATTTGGTTCTTCTAAAGTCTACAAGCAAGATTCTTTTACTTGCTTAGTCATGAAAAATTCTGGGTTACCCCACTCAGATT TTCATGTTATGTGATTCACTTAACTTTAAAAACAAAAAAAAGAATATCGTTGTTCAAGCTCAATACTATTCTTAGGTTAT TTGTGTCTGTGATGACTTATCACCATTTCATTAATTTCAATAGGAATATTTGAATTCCAGATTTGCAAATTTGATTGAAC ATCTAATGAATAAGGAGGACATTCATTTGGTCAAGTTCTTTTGTGTTTTTTCTTTGGGAAATATTGATGCTAAATGCTAA TTAAGCTCTTGATAGTTGTTGATAAAGTATGCTACTGCATTAACTAAACCATACAATTTTTGTTAACCTTTATGAGATAA TAAACTTAAAATCCTAAAAGTAGTAGCTGATATCAACTACATAGATGACATATTCTTTTAAACAC
CDS sequence (LotjaGi3g1v0190900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTGAGGAATAAGATTCCATGGTGGCACGGCGTTGCTGCTCTGTTCGGAGAATCCTATCGCCGGTGTTACGCCAC CAGCAGCAAAGTGGACCTGAAGAAACTCCGCCCCATGATTCTCAAAAGAATCGAGAAACGCTCCCAACTTTACCCCATTC CCTCCATGATTCCCGTTGCCAACGAGGTTCTCCTCTCTAGGAATGTTCTCATCCATGGCGTTTCCACCCTCCTCAATCAC TTCCCTCTCATGTCTTGCAAATTCTGTCCAGAGATATATATTGGTGAGAAGGGGCATTTAATTCAGACTTGCCGGGGTTA CAAGCATCGTGCCAAGCATCAGGTTCATGAATGGGTCCAAGGTGGTTTGAATGATATACTTGTTCCTGTTGAAACATTTC ACTTGAAGAACATGTTCCAAAGTGTTATTAGGCATAATCAAAGGTTTGACTTTGATCGCATCCCTGCTGTTGTTGAGCTA TGCTGGCAAGCCGGGGCTGATCCCCATGATGAAAACCTTAATTCAAGTAATTGGAACTTGGAGGATGCAAATGGCATTGT TGATGGAACTGAGTCCTTGTCACCAAGTGATCTTGCCTCTATAGCAAATAAAACTGTCAATGCTTGGGAGACTCTCAGGT CTGGGGTGGAGAAGTTGTTGTTGGTTTATCCGGCAAAAGTTTGTAAATATTGTTCTGAGGTGCATGTTGGGCCGTCTGGC CATAAAGCTAGGCTCTGTGGAGTGTTTAAGTATGAAAGTTGGAAAGGAACTCACTTTTGGACAAAAGCTAATGTGGATAA TTTAGTGCCACCAAAGATTGTATGGAAACGAAGACCTCAAGATCCTCCTGTACTTTTGAATGCAGGGAGAAACTTCTATG GGCGTCTTCCAGCTGTATTGGATCTGTGCACAATAGCTGGTGCTATTGTGCCTGCTAAGTATAATATTATGATGAAAGTG CAAGGTATGTCTGGCCCTGCTAATAATAAGATCTGGACGGGCATTAGATAA
Protein sequence (LotjaGi3g1v0190900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALRNKIPWWHGVAALFGESYRRCYATSSKVDLKKLRPMILKRIEKRSQLYPIPSMIPVANEVLLSRNVLIHGVSTLLNH FPLMSCKFCPEIYIGEKGHLIQTCRGYKHRAKHQVHEWVQGGLNDILVPVETFHLKNMFQSVIRHNQRFDFDRIPAVVEL CWQAGADPHDENLNSSNWNLEDANGIVDGTESLSPSDLASIANKTVNAWETLRSGVEKLLLVYPAKVCKYCSEVHVGPSG HKARLCGVFKYESWKGTHFWTKANVDNLVPPKIVWKRRPQDPPVLLNAGRNFYGRLPAVLDLCTIAGAIVPAKYNIMMKV QGMSGPANNKIWTGIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 326 | 308 | 2.5E-166 | – | |
| PANTHER | 19 | 326 | 308 | 2.5E-166 | – | |
| Pfam | 29 | 167 | 139 | 5.1E-41 | ||
| ProSiteProfiles | 85 | 170 | 86 | 24.292 | ||
| Pfam | 196 | 311 | 116 | 1.0E-18 | ||
| ProSiteProfiles | 227 | 312 | 86 | 20.038 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0190900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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