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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0190900 |
| Transcript ID | LotjaGi3g1v0190900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | APO protein; TAIR: AT3G21740.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial; TrEMBL-Plants: tr|K7M2V5|K7M2V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0190900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27647823..27649551) extracted from Lotus japonicus Gifu genome v1.2.
AGGAATAAGATTCCATGGTGGCACGGCGTTGCTGCTCTGTTCGGAGAATCCTATCGCCGGTGTTACGCCACCAGCAGCAA AGTGGACCTGAAGAAACTCCGCCCCATGATTCTCAAAAGAATCGAGAAACGCTCCCAACTTTACCCCATTCCCTCCATGA TTCCCGTTGCCAACGAGGTTCTCCTCTCTAGGAATGTTCTCATCCATGGCGTTTCCACCCTCCTCAATCACTTCCCTCTC ATGTCTTGCAAGTCAGTGTTCTTTTTCTTTGAATGTTCTGAATTTAATCCTATATCATTAGTCATTCTCTAAAATCACTG TATTTGAGTTTTTATTGGTGATGTTTTATATTGAAGACATAAAGAGCAAGTAGGGAATTAGGGATTGATTGAATTGAAAT TATCTTCACCTTTAAAGAACAAATTGAAAATGAATATTAAGAGATTTGGGTGCTCTTTTCCATTAGCTTCTTCTGCTTTG ACATTACATGAAGTAGCTAGTCACTCATGAGCACTGGATATGTTTTGATCATTGTATATTTTTTTTCGTTCGAATGTCCA TTTAGATATTAAATGATGGAGGAAAGAAAAGTGGGATTTTCTTGGTGAATGCAAAGAAGATTGGAAACATTAGCTTGTTT TAACATAAGTGAGCAAACACTTTTGCTTGTTACCGGTGCTTATAATTTATAAATGTTGAATGTTAAAATAAACCATGAGA CAAACACTTCTACTTAAAATGCCAAAGTTTTTATTAAGAGTATTTTTCTGGTTTCTTATCTTTAGGAGTTACTACCATTT ACTCGTTGTCAATTATTATTGTAAGGAATAATGTTTGAACCGTGTGATCATTAGGAAATTTGTATTTTACTTGGACTTGT TGTCTTCCCATTTTTGTAAGCTCAAGTTGTTGAAACTTGAAAACATTATATGCTTATCTACTCTTATTATGTATTTACAG ATTCTGTCCAGAGATATATATTGGTGAGAAGGGGCATTTAATTCAGACTTGCCGGGGTTACAAGCATCGTGCCAAGCATC AGGTTCATGAATGGGTCCAAGGTGGTTTGAATGATATACTTGTTCCTGTTGAAACATTTCACTTGAAGAACATGTTCCAA AGTGTTATTAGGCATAATCAAAGGTTTGACTTTGATCGCATCCCTGCTGTTGTTGAGCTATGCTGGCAAGCCGGGGCTGA TCCCCATGATGAAAACCTTAATTCAAGTAATTGGAACTTGGAGGATGCAAATGGCATTGTTGATGGAACTGAGTCCTTGT CACCAAGTGATCTTGCCTCTATAGCAAATAAAACTGTCAATGCTTGGGAGACTCTCAGGTCTGGGGTGGAGAAGTTGTTG TTGGTTTATCCGGCAAAAGTTTGTAAATATTGTTCTGAGGTGCATGTTGGGCCGTCTGGCCATAAAGCTAGGCTCTGTGG AGTGTTTAAGTATGAAAGTTGGAAAGGAACTCACTTTTGGACAAAAGCTAATGTGGATAATTTAGTGCCACCAAAGATTG TATGGAAACGAAGACCTCAAGATCCTCCTGTACTTTTGAATGCAGGGAGAAACTTCTATGGGCGTCTTCCAGCTGTATTG GATCTGTGCACAATAGCTGGTGCTATTGTGCCTGCTAAGTATAATATTATGATGAAAGTGCAAGGTATGTCTGGCCCTGC TAATAATAAGATCTGGACGGGCATTAGATAAACAAACTTATGCAAGCAA
CDS sequence (LotjaGi3g1v0190900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCTCAAAAGAATCGAGAAACGCTCCCAACTTTACCCCATTCCCTCCATGATTCCCGTTGCCAACGAGGTTCTCCT CTCTAGGAATGTTCTCATCCATGGCGTTTCCACCCTCCTCAATCACTTCCCTCTCATGTCTTGCAAATTCTGTCCAGAGA TATATATTGGTGAGAAGGGGCATTTAATTCAGACTTGCCGGGGTTACAAGCATCGTGCCAAGCATCAGGTTCATGAATGG GTCCAAGGTGGTTTGAATGATATACTTGTTCCTGTTGAAACATTTCACTTGAAGAACATGTTCCAAAGTGTTATTAGGCA TAATCAAAGGTTTGACTTTGATCGCATCCCTGCTGTTGTTGAGCTATGCTGGCAAGCCGGGGCTGATCCCCATGATGAAA ACCTTAATTCAAGTAATTGGAACTTGGAGGATGCAAATGGCATTGTTGATGGAACTGAGTCCTTGTCACCAAGTGATCTT GCCTCTATAGCAAATAAAACTGTCAATGCTTGGGAGACTCTCAGGTCTGGGGTGGAGAAGTTGTTGTTGGTTTATCCGGC AAAAGTTTGTAAATATTGTTCTGAGGTGCATGTTGGGCCGTCTGGCCATAAAGCTAGGCTCTGTGGAGTGTTTAAGTATG AAAGTTGGAAAGGAACTCACTTTTGGACAAAAGCTAATGTGGATAATTTAGTGCCACCAAAGATTGTATGGAAACGAAGA CCTCAAGATCCTCCTGTACTTTTGAATGCAGGGAGAAACTTCTATGGGCGTCTTCCAGCTGTATTGGATCTGTGCACAAT AGCTGGTGCTATTGTGCCTGCTAAGTATAATATTATGATGAAAGTGCAAGGTATGTCTGGCCCTGCTAATAATAAGATCT GGACGGGCATTAGATAA
Protein sequence (LotjaGi3g1v0190900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILKRIEKRSQLYPIPSMIPVANEVLLSRNVLIHGVSTLLNHFPLMSCKFCPEIYIGEKGHLIQTCRGYKHRAKHQVHEW VQGGLNDILVPVETFHLKNMFQSVIRHNQRFDFDRIPAVVELCWQAGADPHDENLNSSNWNLEDANGIVDGTESLSPSDL ASIANKTVNAWETLRSGVEKLLLVYPAKVCKYCSEVHVGPSGHKARLCGVFKYESWKGTHFWTKANVDNLVPPKIVWKRR PQDPPVLLNAGRNFYGRLPAVLDLCTIAGAIVPAKYNIMMKVQGMSGPANNKIWTGIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 288 | 288 | 3.6E-159 | – | |
| PANTHER | 1 | 288 | 288 | 3.6E-159 | – | |
| Pfam | 15 | 129 | 115 | 5.1E-40 | ||
| ProSiteProfiles | 47 | 132 | 86 | 24.292 | ||
| Pfam | 158 | 273 | 116 | 7.8E-19 | ||
| ProSiteProfiles | 189 | 274 | 86 | 20.038 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0190900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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