Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0191900 |
| Transcript ID | LotjaGi3g1v0191900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine-rich receptor-kinase-like protein; TAIR: AT3G22060.1 Receptor-like protein kinase-related family protein; Swiss-Prot: sp|Q9LRJ9|CRR38_ARATH Cysteine-rich repeat secretory protein 38; TrEMBL-Plants: tr|K7M2U5|K7M2U5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0191900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27760706..27761554) extracted from Lotus japonicus Gifu genome v1.2.
TAGAAAGAAATTAAACACACATTTCCTTAATCACTTCCATCCAAAATGGCTTCCTCAAAGCTCTTCACAGTTGTTCTCTT AGCTCTCTTTCTCCAAACATCTTTTGGAGCCAATCCTCTCTACCATATCTGTTCAAACACTGATAATTTCACAGACCAAA GCCCATATGAATCAAACCTGAAAATTCTGATGAACTCACTCATCTACAAGACCCCTTCATCAGGCTTTGGTGTTGGGTCA GTGGGCCAATATCAAACCCAACAAGCCCATGGGCTCGCTCTCTGCCGTGGCGATGTCTCACCCTCAGAATGCAAAACCTG TGTCTCTGAGGCAACCACAGAAATCCTCAGCCTATGTCCTCACAACAAAGGTGCTATTATATGGTATGACAATTGCATGT TCAAGTATTTGCACACTGATTTTTTTGGCAAAATTGACAACACAAACAAGTTCTCTTTGTTGAATGTGCAAAATGTTACT GATCCTAGCACATTTAACTACATGGTCAAGGACTTACTGAGCCTACTTTCCTATAAAGCTTCCATGGACACAAAATTTTA TGCTGAAGGAGAGCTAAAGATTAATGGAGAATCAGATAAAATTTATGGGTTAACTCAGTGCACCAGAGACCTTTCTAGCG TTGATTGCAAGAAGTGTCTTGATAATGCAATTGGTGAACTTCCAAATTGTTGTGATGGGAAAAAAGGAGGCAGGGTTGTT GGTGGAAGCTGCAACATTAGATATGAAATTTACTCATTTGTTAGGGAGTAGACTCGAATTTTATGGATTGAGCTATGATA AATAAAATATTTTTTTTTAAAGGAGCTATGATAAATAAAATAAGTACTG
CDS sequence (LotjaGi3g1v0191900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCTCAAAGCTCTTCACAGTTGTTCTCTTAGCTCTCTTTCTCCAAACATCTTTTGGAGCCAATCCTCTCTACCA TATCTGTTCAAACACTGATAATTTCACAGACCAAAGCCCATATGAATCAAACCTGAAAATTCTGATGAACTCACTCATCT ACAAGACCCCTTCATCAGGCTTTGGTGTTGGGTCAGTGGGCCAATATCAAACCCAACAAGCCCATGGGCTCGCTCTCTGC CGTGGCGATGTCTCACCCTCAGAATGCAAAACCTGTGTCTCTGAGGCAACCACAGAAATCCTCAGCCTATGTCCTCACAA CAAAGGTGCTATTATATGGTATGACAATTGCATGTTCAAGTATTTGCACACTGATTTTTTTGGCAAAATTGACAACACAA ACAAGTTCTCTTTGTTGAATGTGCAAAATGTTACTGATCCTAGCACATTTAACTACATGGTCAAGGACTTACTGAGCCTA CTTTCCTATAAAGCTTCCATGGACACAAAATTTTATGCTGAAGGAGAGCTAAAGATTAATGGAGAATCAGATAAAATTTA TGGGTTAACTCAGTGCACCAGAGACCTTTCTAGCGTTGATTGCAAGAAGTGTCTTGATAATGCAATTGGTGAACTTCCAA ATTGTTGTGATGGGAAAAAAGGAGGCAGGGTTGTTGGTGGAAGCTGCAACATTAGATATGAAATTTACTCATTTGTTAGG GAGTAG
Protein sequence (LotjaGi3g1v0191900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSKLFTVVLLALFLQTSFGANPLYHICSNTDNFTDQSPYESNLKILMNSLIYKTPSSGFGVGSVGQYQTQQAHGLALC RGDVSPSECKTCVSEATTEILSLCPHNKGAIIWYDNCMFKYLHTDFFGKIDNTNKFSLLNVQNVTDPSTFNYMVKDLLSL LSYKASMDTKFYAEGELKINGESDKIYGLTQCTRDLSSVDCKKCLDNAIGELPNCCDGKKGGRVVGGSCNIRYEIYSFVR E
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| PANTHER | 6 | 239 | 234 | 2.2E-101 | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| PANTHER | 6 | 239 | 234 | 2.2E-101 | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 241 | 220 | - | – | |
| Gene3D | 22 | 126 | 105 | 6.1E-28 | ||
| ProSiteProfiles | 23 | 126 | 104 | 20.354 | ||
| Pfam | 29 | 121 | 93 | 1.6E-21 | ||
| Gene3D | 131 | 238 | 108 | 3.2E-29 | ||
| ProSiteProfiles | 132 | 238 | 107 | 22.074 | ||
| Pfam | 142 | 235 | 94 | 2.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0191900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…