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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0192000 |
| Transcript ID | LotjaGi3g1v0192000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TAIR: AT1G05280.1 ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604); Swiss-Prot: sp|Q8JHF2|LFNG_DANRE Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe; TrEMBL-Plants: tr|K7M2U6|K7M2U6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0192000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:27765979..27769174) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTAGGAAGCACAGACCAAAGCACTTGAGGAGGAGTCAGGACTAAGGATGCCGCCCTTACTTTAAAAAAGTTGGTCTT CACATGGCTTTTATTGATTGACTTGAATGCAATGGACCTTCCTATATAGAGAGTGATTTAACTTGAAACTATGAAGTATA GAATTTCCATTTTCCCAGCTTTCTTAAGCCGCAGACTGTGGTGGCACTTTTATACTCCTAATACTTGATGGAGCTCTCCT TATATTATAAAGATAGTTTTTTTTAGAATTATGTGAAAGTGATTATAGCTTCTAATTAAAACTTTCACACATTACACATA TACCATCTCCAAACTCCAACAAGCTCCCTCATTAATCATGATGAAATCACTTCACAATACTCCTATCAAAACCCCACCTC TCACCAAATTCATTTTAGTCTCCTCTTCATTTTGTGCCATTTCTCTCTTTCTATTTACAGTGCTACTCTTTACAACATCA AAGATAGATGTCTTTTCTTCTTCAGAACCTCAAGTCTCTGATCCTGATCCTACCAGCATTGACCATCTTGTCTTTGGAAT TGCTTCAACCGGAACCTCATGGCCTAAGAGGAATGAATATGCCAAGCTCTGGTGGATTAAAACAATGAAAGGTTGTGTTT TTGTGGATAATCTCCCACCTGAAGACAACACTGGTGGAATTTCTCTTCCTCCTCTGTGTGTCTCTGAAGACACTTCCCAG TTTCCTTTCACTTACAAGCCCGGGGGACTAAGATCAGCGATCCGCGTGGCGCGTGTGGTGAAGGAGACAGTGGCGCTGAA TTATTCCGGTGTTCGATGGTACGTGTTTGGAGATGATGACACTGTTTTCTTCCCTGAGAATCTGGTCAAAACACTTTCCA AATATGATCACAGGTTATGGTACTATGTTGGTGCTTACTCTGAGAGTTATGAGGGGACACAGACTTTTGGTTTTGGAATG GCTTTTGGTGGTGGTGGTTTTGCCATTAGTTCCTCTCTAGCAAAAGTTCTAGCCAAGGTGTTTGATTCATGTATACAGAG GTACTCACATCTTTATGGAAGTGATGCAAGGGTGTACTCTTGCATAGCAGAGCTAGGTGTGGGATTAACATATGAACCAG GTTTTCATCAGGTAATTCATCATTAATACCATGTTTGAATCAGCTTATTTTTTCGACAATCCATTCTGACAGCTAAAAGC TAGTCAGAGAAATTTCTCCCCAAATTGGCTCTAATTTTAGAACTAGTTGTAGCTTATGTATTCTCATAAACAATTCTTCT GACTCAAGAAGTTACCAACAGAACCTTCTCCCCAAAATTTATTCTGATTTTAGAATCACTACTTGAGGGGTTTCCAATAT GCTGTAATTTATTTTAAGTGTTTAAAAAGGGAAATTGTTTGTGATTCCTTTTTCCCTCTCTTTAATTATCATCCTAATGA GCACTTTGTGTGATTATGAATTTGGATTAACATATGAACCCAGTTTTCATAAGCTAATTAATTATAAGTGCATGTTTGAA AACCCAACTACATTCTCAAATCAAAATCAATTATGGAGAGAAGTTTCTGTGACTAGCTTCTGAGTTTTAGAATTTATTCA AAACTCATAAGTTAATTCAAACATGCTGTAATTAGTCTTAAAAATGAAAACTGTTGGTGATTTCCCTTTTAACCCTCTTT ATCATACTAATTAGTACACTGTTTGTGTGATTATGAAATTGGATTAGGTGGATTTGAGGGGAAACATATTTGGCCTATTG GCAGCACATCCATTGAGTCCCTTGTTGTCCCTGCATCACCCAGATCAAACTGAACCTATCTTTCCCAACATGACAACTAG AACTTCTATCAAACACTTGTTTAAGGCTGCAAATGTTGATTCCCAGAGGATCCTACAGCAAACAGTTTGCTATGAGAAAC GATTCTCATGGACAGTTTCAGTGTCATGGGGATATGCAGTTCAAGTGTTCCAGAACAAGATGCTTTTGCCAGAAGTACTG AGAGTGCAAGAGACATTCAAGCCATGGAAGGAAAAAGTTGCTTTGGCAGGGATATACACTTTTAATTCAAAAGAAATTCA CCCTGACCCATGTAGAAGACCCTCCATTTTCTATCTTGACAAGGTTTCTTCTGGGAAAGATGGCATCATAAGCAGCTATA GAAAATCTTTTCAGAATTGCTCATATAACAAGATATCACAACTGGAAGATATCAAAGTGGTCACTAATAAGTTGAACCTT GACAGCAAACAGGTAATCTATAGACACATGTATTTATAGCATTTGGTTTAGCTTATTTTTCCTCTAAATCAATTCTGACA TATAGAAGTTTCTCACAAAAACCTCTTTTCAAATTTTGACTTTAGAATTACTTGTAGAATTGTCGAATGATTTCTAAACA CGCACTTAGAACATTAGATTTGGGTCACTCAATTTGAACGGGTGAGATCGGCATTCAGTCAACAACCGAGCGGTTTTAGA ACATCAATAATGTGCACTGCCACCAAAACAGTTACTGAAAACTAAAATTCAGAATATAATTTATAAAAATACATTTCAAG AATTAGTTTCCGATTTCGACTTTTATAACTTTACACATTAGTAACGATTTTAGATTGCAAGACCCGGCACTATGTCTATT GAATATCAAGATTGTGCTAGGATTTTAAAATATTTTTCCTATTTATTTATAGACTGTTTTTTTGTATTCAGTTGCAGGCT CCAAGAAGGCAATGTTGTGATGTGTTGTCCTCTAGCTCTGGTCACCTAATGGAAATTGCAATTAGAGAGTGCAAATATGA TGAACTGATTTACATGCACTAACAGAGAAAAAGTGCTTAGTTATGTTCAATTTCTCTCAATTTATGCTCATTGAAGGCGG AGAACTTTTGCTTGTGTATATGAGATGGCAAGATATATATGTTTGTAAGGAATTTTCAGTCTAGATTTCCAACTTTTCAT AACAGAGCAACTTATTGAAGTTGTAAGAATGATTTATTCTTCTGCACCCAAACTTGAAACAAAATAGGATTGGGAAATGA TTAGGGTAATAACACATGAAGGAGGGAAAACGCAGGAGGAAAATCTTGTATTATTTTTGTCCAATTGAACATAGTAAATT AATAAGCAATATGTTACCACTTCAAAAGAAAACCAATTTGTACTTATGTAATTATGTAATATAAAATGATGATACG
CDS sequence (LotjaGi3g1v0192000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAAATCACTTCACAATACTCCTATCAAAACCCCACCTCTCACCAAATTCATTTTAGTCTCCTCTTCATTTTGTGC CATTTCTCTCTTTCTATTTACAGTGCTACTCTTTACAACATCAAAGATAGATGTCTTTTCTTCTTCAGAACCTCAAGTCT CTGATCCTGATCCTACCAGCATTGACCATCTTGTCTTTGGAATTGCTTCAACCGGAACCTCATGGCCTAAGAGGAATGAA TATGCCAAGCTCTGGTGGATTAAAACAATGAAAGGTTGTGTTTTTGTGGATAATCTCCCACCTGAAGACAACACTGGTGG AATTTCTCTTCCTCCTCTGTGTGTCTCTGAAGACACTTCCCAGTTTCCTTTCACTTACAAGCCCGGGGGACTAAGATCAG CGATCCGCGTGGCGCGTGTGGTGAAGGAGACAGTGGCGCTGAATTATTCCGGTGTTCGATGGTACGTGTTTGGAGATGAT GACACTGTTTTCTTCCCTGAGAATCTGGTCAAAACACTTTCCAAATATGATCACAGGTTATGGTACTATGTTGGTGCTTA CTCTGAGAGTTATGAGGGGACACAGACTTTTGGTTTTGGAATGGCTTTTGGTGGTGGTGGTTTTGCCATTAGTTCCTCTC TAGCAAAAGTTCTAGCCAAGGTGTTTGATTCATGTATACAGAGGTACTCACATCTTTATGGAAGTGATGCAAGGGTGTAC TCTTGCATAGCAGAGCTAGGTGTGGGATTAACATATGAACCAGGTTTTCATCAGGTGGATTTGAGGGGAAACATATTTGG CCTATTGGCAGCACATCCATTGAGTCCCTTGTTGTCCCTGCATCACCCAGATCAAACTGAACCTATCTTTCCCAACATGA CAACTAGAACTTCTATCAAACACTTGTTTAAGGCTGCAAATGTTGATTCCCAGAGGATCCTACAGCAAACAGTTTGCTAT GAGAAACGATTCTCATGGACAGTTTCAGTGTCATGGGGATATGCAGTTCAAGTGTTCCAGAACAAGATGCTTTTGCCAGA AGTACTGAGAGTGCAAGAGACATTCAAGCCATGGAAGGAAAAAGTTGCTTTGGCAGGGATATACACTTTTAATTCAAAAG AAATTCACCCTGACCCATGTAGAAGACCCTCCATTTTCTATCTTGACAAGGTTTCTTCTGGGAAAGATGGCATCATAAGC AGCTATAGAAAATCTTTTCAGAATTGCTCATATAACAAGATATCACAACTGGAAGATATCAAAGTGGTCACTAATAAGTT GAACCTTGACAGCAAACAGTTGCAGGCTCCAAGAAGGCAATGTTGTGATGTGTTGTCCTCTAGCTCTGGTCACCTAATGG AAATTGCAATTAGAGAGTGCAAATATGATGAACTGATTTACATGCACTAA
Protein sequence (LotjaGi3g1v0192000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMKSLHNTPIKTPPLTKFILVSSSFCAISLFLFTVLLFTTSKIDVFSSSEPQVSDPDPTSIDHLVFGIASTGTSWPKRNE YAKLWWIKTMKGCVFVDNLPPEDNTGGISLPPLCVSEDTSQFPFTYKPGGLRSAIRVARVVKETVALNYSGVRWYVFGDD DTVFFPENLVKTLSKYDHRLWYYVGAYSESYEGTQTFGFGMAFGGGGFAISSSLAKVLAKVFDSCIQRYSHLYGSDARVY SCIAELGVGLTYEPGFHQVDLRGNIFGLLAAHPLSPLLSLHHPDQTEPIFPNMTTRTSIKHLFKAANVDSQRILQQTVCY EKRFSWTVSVSWGYAVQVFQNKMLLPEVLRVQETFKPWKEKVALAGIYTFNSKEIHPDPCRRPSIFYLDKVSSGKDGIIS SYRKSFQNCSYNKISQLEDIKVVTNKLNLDSKQLQAPRRQCCDVLSSSSGHLMEIAIRECKYDELIYMH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 42 | 42 | - | – | |
| PANTHER | 12 | 469 | 458 | 9.5E-267 | – | |
| PANTHER | 12 | 469 | 458 | 9.5E-267 | – | |
| Phobius | 18 | 37 | 20 | - | – | |
| TMHMM | 19 | 41 | 23 | - | – | |
| Phobius | 38 | 42 | 5 | - | – | |
| Phobius | 43 | 469 | 427 | - | – | |
| Gene3D | 51 | 261 | 211 | 7.6E-9 | – | |
| Pfam | 196 | 442 | 247 | 6.2E-102 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0192000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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